EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000002093 (Gene tree)
Gene ID: 101079697
Gene Symbol: si:ch73-14h10.2
Alias: wu:fe48h10|zgc:101795
Full Name: LSM2 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 1613 bases
Position: chr20:1410828-1412440
Accession: 101079697
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000004820	LSM	PF01423.22	1.9e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000004849	-	282	XM_011614478	ENSTRUP00000004820	93 (aa)	XP_011612780	H2RXF0

Gene Model

Click here to download ENSTRUG00000002093's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03018	RNA degradation	KEGG
tru03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000002093's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000002093	si:ch73-14h10.2	100	33.000	ENSTRUG00000021737	lsm4	68	33.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSG00000204392	LSM2	99	97.872	Homo_sapiens
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSAPOG00000017967	si:ch73-14h10.2	99	98.936	Acanthochromis_polyacanthus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSAMEG00000006483	LSM2	100	97.872	Ailuropoda_melanoleuca
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSACIG00000007795	si:ch73-14h10.2	62	98.936	Amphilophus_citrinellus
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSAOCG00000006949	si:ch73-14h10.2	78	98.936	Amphiprion_ocellaris
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSAPEG00000020375	si:ch73-14h10.2	87	98.936	Amphiprion_percula
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSATEG00000011376	si:ch73-14h10.2	99	98.936	Anabas_testudineus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSACAG00000017281	LSM2	90	97.872	Anolis_carolinensis
ENSTRUG00000002093	si:ch73-14h10.2	97	79.121	ENSANAG00000028033	-	96	79.121	Aotus_nancymaae
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSANAG00000028372	LSM2	99	97.872	Aotus_nancymaae
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSACLG00000024717	smx5	99	98.936	Astatotilapia_calliptera
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSAMXG00000036868	si:ch73-14h10.2	99	98.936	Astyanax_mexicanus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSBTAG00000005634	LSM2	99	97.872	Bos_taurus
ENSTRUG00000002093	si:ch73-14h10.2	99	81.720	WBGene00001808	gut-2	96	81.720	Caenorhabditis_elegans
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSCJAG00000040899	LSM2	99	97.872	Callithrix_jacchus
ENSTRUG00000002093	si:ch73-14h10.2	77	95.833	ENSCAFG00020016978	-	89	95.833	Canis_lupus_dingo
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSCHIG00000016153	LSM2	100	97.872	Capra_hircus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSTSYG00000034844	LSM2	99	97.872	Carlito_syrichta
ENSTRUG00000002093	si:ch73-14h10.2	99	88.172	ENSTSYG00000030015	-	99	88.172	Carlito_syrichta
ENSTRUG00000002093	si:ch73-14h10.2	78	97.260	ENSCAPG00000009970	LSM2	94	97.260	Cavia_aperea
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSCPOG00000021053	LSM2	99	97.872	Cavia_porcellus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSCCAG00000024276	LSM2	99	97.872	Cebus_capucinus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSCATG00000013737	LSM2	99	97.872	Cercocebus_atys
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSCLAG00000008081	LSM2	99	97.872	Chinchilla_lanigera
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSCSAG00000008800	LSM2	99	97.872	Chlorocebus_sabaeus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSCHOG00000007702	LSM2	99	97.872	Choloepus_hoffmanni
ENSTRUG00000002093	si:ch73-14h10.2	100	94.681	ENSCING00000022677	-	99	94.681	Ciona_intestinalis
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSCANG00000039576	LSM2	99	97.872	Colobus_angolensis_palliatus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSCGRG00001013932	Lsm2	99	97.872	Cricetulus_griseus_chok1gshd
ENSTRUG00000002093	si:ch73-14h10.2	78	97.260	ENSCGRG00000013311	Lsm2	63	97.260	Cricetulus_griseus_crigri
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSCSEG00000002911	si:ch73-14h10.2	99	98.936	Cynoglossus_semilaevis
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSCVAG00000015394	si:ch73-14h10.2	89	98.936	Cyprinodon_variegatus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSDARG00000070867	smx5	99	97.872	Danio_rerio
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSDNOG00000002633	LSM2	100	97.872	Dasypus_novemcinctus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSDORG00000026571	Lsm2	99	97.872	Dipodomys_ordii
ENSTRUG00000002093	si:ch73-14h10.2	96	94.444	FBgn0036277	CG10418	95	94.444	Drosophila_melanogaster
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSEASG00005015670	LSM2	79	97.872	Equus_asinus_asinus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSECAG00000018791	LSM2	79	97.872	Equus_caballus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSELUG00000008241	smx5	99	97.872	Esox_lucius
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSFCAG00000045887	LSM2	99	97.872	Felis_catus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSFDAG00000000390	LSM2	99	97.872	Fukomys_damarensis
ENSTRUG00000002093	si:ch73-14h10.2	100	97.895	ENSFHEG00000009619	si:ch73-14h10.2	100	97.895	Fundulus_heteroclitus
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSGMOG00000019208	si:ch73-14h10.2	100	98.936	Gadus_morhua
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSGAFG00000017286	si:ch73-14h10.2	99	98.936	Gambusia_affinis
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSGACG00000003827	si:ch73-14h10.2	99	98.936	Gasterosteus_aculeatus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSGAGG00000012458	LSM2	99	97.872	Gopherus_agassizii
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSGGOG00000011383	LSM2	99	97.872	Gorilla_gorilla
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSHGLG00000011299	LSM2	99	97.872	Heterocephalus_glaber_female
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSHGLG00100017194	LSM2	99	97.872	Heterocephalus_glaber_male
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSHCOG00000014057	si:ch73-14h10.2	99	98.936	Hippocampus_comes
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSIPUG00000010539	lsm2	99	98.936	Ictalurus_punctatus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSSTOG00000013144	LSM2	99	97.872	Ictidomys_tridecemlineatus
ENSTRUG00000002093	si:ch73-14h10.2	95	75.281	ENSJJAG00000019477	-	100	75.281	Jaculus_jaculus
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSKMAG00000014909	si:ch73-14h10.2	99	98.936	Kryptolebias_marmoratus
ENSTRUG00000002093	si:ch73-14h10.2	100	100.000	ENSLBEG00000025781	si:ch73-14h10.2	98	100.000	Labrus_bergylta
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSLACG00000015064	LSM2	99	98.936	Latimeria_chalumnae
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSLOCG00000005228	si:ch73-14h10.2	99	98.936	Lepisosteus_oculatus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSLAFG00000016139	LSM2	100	97.872	Loxodonta_africana
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSMFAG00000001016	LSM2	99	97.872	Macaca_fascicularis
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSMMUG00000006832	LSM2	99	97.872	Macaca_mulatta
ENSTRUG00000002093	si:ch73-14h10.2	100	79.787	ENSMMUG00000045473	-	97	79.787	Macaca_mulatta
ENSTRUG00000002093	si:ch73-14h10.2	80	82.667	ENSMNEG00000040973	-	91	82.667	Macaca_nemestrina
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSMNEG00000045355	LSM2	99	97.872	Macaca_nemestrina
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSMLEG00000037369	-	99	97.872	Mandrillus_leucophaeus
ENSTRUG00000002093	si:ch73-14h10.2	100	78.723	ENSMLEG00000031181	-	97	78.723	Mandrillus_leucophaeus
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSMAMG00000010053	si:ch73-14h10.2	72	98.936	Mastacembelus_armatus
ENSTRUG00000002093	si:ch73-14h10.2	100	96.875	ENSMZEG00005008688	si:ch73-14h10.2	100	96.875	Maylandia_zebra
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSMAUG00000021966	Lsm2	99	97.872	Mesocricetus_auratus
ENSTRUG00000002093	si:ch73-14h10.2	78	76.712	ENSMICG00000046764	-	93	76.712	Microcebus_murinus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSMOCG00000015306	Lsm2	99	97.872	Microtus_ochrogaster
ENSTRUG00000002093	si:ch73-14h10.2	100	100.000	ENSMMOG00000005603	si:ch73-14h10.2	100	100.000	Mola_mola
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSMODG00000015177	LSM2	99	98.936	Monodelphis_domestica
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSMALG00000016490	si:ch73-14h10.2	99	98.936	Monopterus_albus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	MGP_CAROLIEiJ_G0021490	Lsm2	99	97.872	Mus_caroli
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSMUSG00000007050	Lsm2	99	97.872	Mus_musculus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	MGP_PahariEiJ_G0020485	Lsm2	99	97.872	Mus_pahari
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	MGP_SPRETEiJ_G0022395	Lsm2	99	97.872	Mus_spretus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSNGAG00000003997	Lsm2	99	97.872	Nannospalax_galili
ENSTRUG00000002093	si:ch73-14h10.2	100	96.875	ENSNBRG00000012904	si:ch73-14h10.2	100	96.875	Neolamprologus_brichardi
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSNLEG00000035542	LSM2	99	97.872	Nomascus_leucogenys
ENSTRUG00000002093	si:ch73-14h10.2	76	100.000	ENSMEUG00000003419	LSM2	100	100.000	Notamacropus_eugenii
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSOPRG00000003668	LSM2	99	97.872	Ochotona_princeps
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSODEG00000017583	LSM2	99	97.872	Octodon_degus
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSONIG00000019321	si:ch73-14h10.2	99	98.936	Oreochromis_niloticus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSOANG00000005398	LSM2	100	97.872	Ornithorhynchus_anatinus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSOCUG00000002583	LSM2	99	97.872	Oryctolagus_cuniculus
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSORLG00000029858	si:ch73-14h10.2	99	98.936	Oryzias_latipes
ENSTRUG00000002093	si:ch73-14h10.2	100	75.610	ENSORLG00015000465	si:ch73-14h10.2	99	75.610	Oryzias_latipes_hsok
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSOMEG00000002892	si:ch73-14h10.2	99	98.936	Oryzias_melastigma
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSOARG00000004575	LSM2	100	97.872	Ovis_aries
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSPPAG00000032431	LSM2	99	97.872	Pan_paniscus
ENSTRUG00000002093	si:ch73-14h10.2	80	84.000	ENSPPAG00000043941	-	93	84.000	Pan_paniscus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSPPRG00000015353	LSM2	99	97.872	Panthera_pardus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSPTIG00000010303	LSM2	99	97.872	Panthera_tigris_altaica
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSPTRG00000017986	LSM2	99	97.872	Pan_troglodytes
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSPANG00000024577	LSM2	99	97.872	Papio_anubis
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSPKIG00000007028	si:ch73-14h10.2	99	98.936	Paramormyrops_kingsleyae
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSPSIG00000004458	LSM2	78	97.872	Pelodiscus_sinensis
ENSTRUG00000002093	si:ch73-14h10.2	100	98.925	ENSPMGG00000018511	si:ch73-14h10.2	100	98.925	Periophthalmus_magnuspinnatus
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSPCIG00000018560	-	95	98.936	Phascolarctos_cinereus
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSPFOG00000001621	si:ch73-14h10.2	99	98.936	Poecilia_formosa
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSPLAG00000017165	si:ch73-14h10.2	99	98.936	Poecilia_latipinna
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSPMEG00000019574	si:ch73-14h10.2	99	98.936	Poecilia_mexicana
ENSTRUG00000002093	si:ch73-14h10.2	100	100.000	ENSPREG00000016534	si:ch73-14h10.2	100	100.000	Poecilia_reticulata
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSPPYG00000016461	-	53	97.872	Pongo_abelii
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSPCAG00000013737	LSM2	99	97.872	Procavia_capensis
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSPCOG00000020134	LSM2	99	97.872	Propithecus_coquereli
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSPVAG00000012405	LSM2	99	97.872	Pteropus_vampyrus
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSPNYG00000019298	smx5	99	98.936	Pundamilia_nyererei
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSPNAG00000027769	si:ch73-14h10.2	99	98.936	Pygocentrus_nattereri
ENSTRUG00000002093	si:ch73-14h10.2	56	90.566	ENSRNOG00000011065	AC126899.1	76	90.566	Rattus_norvegicus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSRNOG00000048725	Lsm2	99	97.872	Rattus_norvegicus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSRBIG00000010172	LSM2	99	97.872	Rhinopithecus_bieti
ENSTRUG00000002093	si:ch73-14h10.2	80	84.000	ENSRBIG00000011356	-	91	84.000	Rhinopithecus_bieti
ENSTRUG00000002093	si:ch73-14h10.2	80	84.000	ENSRROG00000030708	-	91	84.000	Rhinopithecus_roxellana
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSRROG00000030345	LSM2	99	97.872	Rhinopithecus_roxellana
ENSTRUG00000002093	si:ch73-14h10.2	100	63.830	YBL026W	LSM2	99	63.830	Saccharomyces_cerevisiae
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSSBOG00000018943	LSM2	99	97.872	Saimiri_boliviensis_boliviensis
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSSFOG00015006734	lsm2	99	98.936	Scleropages_formosus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSSMAG00000001122	si:ch73-14h10.2	99	97.872	Scophthalmus_maximus
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSSDUG00000021605	smx5	99	98.936	Seriola_dumerili
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSSLDG00000002765	si:ch73-14h10.2	99	98.936	Seriola_lalandi_dorsalis
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSSPUG00000009631	LSM2	99	98.936	Sphenodon_punctatus
ENSTRUG00000002093	si:ch73-14h10.2	100	98.936	ENSSPAG00000016904	si:ch73-14h10.2	99	98.936	Stegastes_partitus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSSSCG00000039021	LSM2	99	97.872	Sus_scrofa
ENSTRUG00000002093	si:ch73-14h10.2	70	93.939	ENSTNIG00000013770	si:ch73-14h10.2	99	93.939	Tetraodon_nigroviridis
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSTTRG00000014131	LSM2	99	97.872	Tursiops_truncatus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSUMAG00000013425	LSM2	65	97.872	Ursus_maritimus
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSVPAG00000001761	LSM2	100	97.872	Vicugna_pacos
ENSTRUG00000002093	si:ch73-14h10.2	80	96.000	ENSVVUG00000016264	-	93	96.000	Vulpes_vulpes
ENSTRUG00000002093	si:ch73-14h10.2	100	97.872	ENSXETG00000024077	lsm2	99	97.872	Xenopus_tropicalis
ENSTRUG00000002093	si:ch73-14h10.2	100	100.000	ENSXCOG00000006078	si:ch73-14h10.2	100	100.000	Xiphophorus_couchianus
ENSTRUG00000002093	si:ch73-14h10.2	100	100.000	ENSXMAG00000028018	si:ch73-14h10.2	100	100.000	Xiphophorus_maculatus