EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000002210 (Gene tree)
Gene ID: 101078654
Gene Symbol: polr1a
Alias: fa26a03|sb:cb935|wu:fa26a03
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 33240 bases
Position: chrHE591614.1:219928-253167
Accession: 101078654
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000005069	RNA_pol_Rpb1_5	PF04998.17	1.8e-98	1	1
ENSTRUP00000005070	RNA_pol_Rpb1_5	PF04998.17	1.9e-98	1	1
ENSTRUP00000005071	RNA_pol_Rpb1_4	PF05000.17	2.9e-21	1	1
ENSTRUP00000005069	RNA_pol_Rpb1_4	PF05000.17	4e-21	1	1
ENSTRUP00000005070	RNA_pol_Rpb1_4	PF05000.17	4.1e-21	1	1
ENSTRUP00000005071	RNA_pol_Rpb1_2	PF00623.20	4.4e-69	1	1
ENSTRUP00000005069	RNA_pol_Rpb1_2	PF00623.20	9.1e-69	1	1
ENSTRUP00000005070	RNA_pol_Rpb1_2	PF00623.20	9.4e-69	1	1
ENSTRUP00000005069	RNA_pol_Rpb1_3	PF04983.18	2.5e-35	1	1
ENSTRUP00000005070	RNA_pol_Rpb1_3	PF04983.18	2.6e-35	1	1
ENSTRUP00000005071	RNA_pol_Rpb1_3	PF04983.18	8.5e-31	1	1
ENSTRUP00000005069	RNA_pol_Rpb1_1	PF04997.12	7.5e-23	1	1
ENSTRUP00000005071	RNA_pol_Rpb1_1	PF04997.12	3.2e-19	1	1
ENSTRUP00000005070	RNA_pol_Rpb1_1	PF04997.12	5.1e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000005099	-	9804	XM_011618106	ENSTRUP00000005069	1683 (aa)	XP_011616408	H2RY49
ENSTRUT00000005101	-	2763	-	ENSTRUP00000005071	920 (aa)	-	H2RY51
ENSTRUT00000005100	-	9891	-	ENSTRUP00000005070	1712 (aa)	-	H2RY50

Gene Model

Click here to download ENSTRUG00000002210's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000002210's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000002210	polr1a	67	32.381	ENSTRUG00000012320	polr2a	57	32.381
ENSTRUG00000002210	polr1a	70	33.121	ENSTRUG00000013488	polr3a	70	33.262

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000002210	polr1a	99	64.403	ENSG00000068654	POLR1A	100	64.327	Homo_sapiens
ENSTRUG00000002210	polr1a	97	79.384	ENSAPOG00000017945	polr1a	99	81.957	Acanthochromis_polyacanthus
ENSTRUG00000002210	polr1a	99	64.153	ENSAMEG00000005807	POLR1A	100	68.303	Ailuropoda_melanoleuca
ENSTRUG00000002210	polr1a	99	75.355	ENSACIG00000022147	polr1a	100	75.030	Amphilophus_citrinellus
ENSTRUG00000002210	polr1a	99	79.646	ENSAOCG00000017336	polr1a	100	79.957	Amphiprion_ocellaris
ENSTRUG00000002210	polr1a	94	88.889	ENSAPEG00000016105	polr1a	98	88.889	Amphiprion_percula
ENSTRUG00000002210	polr1a	99	80.966	ENSATEG00000016773	polr1a	100	80.944	Anabas_testudineus
ENSTRUG00000002210	polr1a	86	64.315	ENSAPLG00000013871	POLR1A	99	63.795	Anas_platyrhynchos
ENSTRUG00000002210	polr1a	99	62.777	ENSACAG00000012141	POLR1A	99	62.427	Anolis_carolinensis
ENSTRUG00000002210	polr1a	99	63.905	ENSANAG00000033927	POLR1A	100	63.448	Aotus_nancymaae
ENSTRUG00000002210	polr1a	99	74.159	ENSACLG00000020541	polr1a	100	74.159	Astatotilapia_calliptera
ENSTRUG00000002210	polr1a	99	63.521	ENSBTAG00000006481	POLR1A	100	63.820	Bos_taurus
ENSTRUG00000002210	polr1a	99	38.523	WBGene00012999	rpoa-1	98	38.158	Caenorhabditis_elegans
ENSTRUG00000002210	polr1a	99	63.752	ENSCJAG00000019547	POLR1A	100	63.662	Callithrix_jacchus
ENSTRUG00000002210	polr1a	99	64.576	ENSCAFG00000007613	POLR1A	100	64.733	Canis_familiaris
ENSTRUG00000002210	polr1a	99	64.542	ENSCAFG00020014752	POLR1A	100	64.699	Canis_lupus_dingo
ENSTRUG00000002210	polr1a	99	64.023	ENSCHIG00000018204	POLR1A	100	63.395	Capra_hircus
ENSTRUG00000002210	polr1a	99	63.668	ENSTSYG00000002761	POLR1A	100	63.862	Carlito_syrichta
ENSTRUG00000002210	polr1a	94	65.431	ENSCAPG00000010132	POLR1A	99	60.981	Cavia_aperea
ENSTRUG00000002210	polr1a	97	65.268	ENSCPOG00000012350	POLR1A	100	63.873	Cavia_porcellus
ENSTRUG00000002210	polr1a	99	63.511	ENSCCAG00000019839	POLR1A	100	63.116	Cebus_capucinus
ENSTRUG00000002210	polr1a	99	63.668	ENSCATG00000029786	POLR1A	100	64.113	Cercocebus_atys
ENSTRUG00000002210	polr1a	99	64.464	ENSCLAG00000005187	POLR1A	100	63.621	Chinchilla_lanigera
ENSTRUG00000002210	polr1a	99	63.725	ENSCSAG00000016251	POLR1A	100	64.060	Chlorocebus_sabaeus
ENSTRUG00000002210	polr1a	83	77.889	ENSCHOG00000003766	-	84	77.889	Choloepus_hoffmanni
ENSTRUG00000002210	polr1a	99	64.836	ENSCPBG00000001115	POLR1A	99	65.149	Chrysemys_picta_bellii
ENSTRUG00000002210	polr1a	99	46.804	ENSCSAVG00000007184	-	99	46.466	Ciona_savignyi
ENSTRUG00000002210	polr1a	99	61.556	ENSCANG00000031785	POLR1A	100	61.543	Colobus_angolensis_palliatus
ENSTRUG00000002210	polr1a	97	64.557	ENSCGRG00001006651	Polr1a	100	64.557	Cricetulus_griseus_chok1gshd
ENSTRUG00000002210	polr1a	60	62.002	ENSCGRG00000010834	Polr1a	100	61.405	Cricetulus_griseus_crigri
ENSTRUG00000002210	polr1a	99	72.797	ENSCSEG00000020190	polr1a	100	72.855	Cynoglossus_semilaevis
ENSTRUG00000002210	polr1a	99	75.749	ENSCVAG00000020941	polr1a	100	75.866	Cyprinodon_variegatus
ENSTRUG00000002210	polr1a	99	69.484	ENSDARG00000098375	polr1a	100	69.701	Danio_rerio
ENSTRUG00000002210	polr1a	97	63.399	ENSDNOG00000010829	POLR1A	100	59.862	Dasypus_novemcinctus
ENSTRUG00000002210	polr1a	99	62.637	ENSDORG00000008298	Polr1a	100	62.285	Dipodomys_ordii
ENSTRUG00000002210	polr1a	96	42.460	FBgn0019938	RpI1	99	42.925	Drosophila_melanogaster
ENSTRUG00000002210	polr1a	72	87.500	ENSETEG00000000412	-	72	87.500	Echinops_telfairi
ENSTRUG00000002210	polr1a	89	48.258	ENSEBUG00000005667	-	99	48.231	Eptatretus_burgeri
ENSTRUG00000002210	polr1a	97	65.441	ENSEASG00005001625	POLR1A	100	63.537	Equus_asinus_asinus
ENSTRUG00000002210	polr1a	95	68.536	ENSECAG00000036306	-	99	68.536	Equus_caballus
ENSTRUG00000002210	polr1a	95	68.536	ENSECAG00000010092	POLR1A	99	68.536	Equus_caballus
ENSTRUG00000002210	polr1a	95	68.536	ENSECAG00000030510	-	99	68.536	Equus_caballus
ENSTRUG00000002210	polr1a	86	73.762	ENSEEUG00000000676	POLR1A	85	73.762	Erinaceus_europaeus
ENSTRUG00000002210	polr1a	99	71.972	ENSELUG00000012769	polr1a	99	72.232	Esox_lucius
ENSTRUG00000002210	polr1a	99	64.074	ENSFCAG00000008966	POLR1A	100	64.447	Felis_catus
ENSTRUG00000002210	polr1a	99	62.770	ENSFALG00000010082	POLR1A	99	62.602	Ficedula_albicollis
ENSTRUG00000002210	polr1a	99	64.576	ENSFDAG00000013726	POLR1A	100	63.370	Fukomys_damarensis
ENSTRUG00000002210	polr1a	97	74.645	ENSFHEG00000005996	polr1a	100	71.563	Fundulus_heteroclitus
ENSTRUG00000002210	polr1a	99	65.775	ENSGMOG00000002230	polr1a	100	66.409	Gadus_morhua
ENSTRUG00000002210	polr1a	97	64.465	ENSGALG00000038160	-	98	62.337	Gallus_gallus
ENSTRUG00000002210	polr1a	99	74.838	ENSGAFG00000015266	polr1a	100	74.705	Gambusia_affinis
ENSTRUG00000002210	polr1a	99	75.231	ENSGACG00000018791	polr1a	100	75.174	Gasterosteus_aculeatus
ENSTRUG00000002210	polr1a	89	65.658	ENSGAGG00000004984	-	95	70.566	Gopherus_agassizii
ENSTRUG00000002210	polr1a	99	64.389	ENSGGOG00000001788	POLR1A	100	63.882	Gorilla_gorilla
ENSTRUG00000002210	polr1a	97	75.751	ENSHBUG00000020021	polr1a	98	76.537	Haplochromis_burtoni
ENSTRUG00000002210	polr1a	99	63.783	ENSHGLG00000006334	POLR1A	100	64.183	Heterocephalus_glaber_female
ENSTRUG00000002210	polr1a	99	63.600	ENSHGLG00100006614	POLR1A	100	63.998	Heterocephalus_glaber_male
ENSTRUG00000002210	polr1a	99	71.724	ENSHCOG00000003345	polr1a	100	71.454	Hippocampus_comes
ENSTRUG00000002210	polr1a	99	69.596	ENSIPUG00000013174	polr1a	100	69.262	Ictalurus_punctatus
ENSTRUG00000002210	polr1a	99	63.907	ENSSTOG00000012580	POLR1A	99	63.663	Ictidomys_tridecemlineatus
ENSTRUG00000002210	polr1a	99	62.680	ENSJJAG00000013113	Polr1a	100	63.158	Jaculus_jaculus
ENSTRUG00000002210	polr1a	99	78.601	ENSKMAG00000007399	polr1a	100	78.127	Kryptolebias_marmoratus
ENSTRUG00000002210	polr1a	97	77.960	ENSLBEG00000015401	polr1a	100	78.166	Labrus_bergylta
ENSTRUG00000002210	polr1a	92	65.088	ENSLACG00000003218	polr1a	100	68.519	Latimeria_chalumnae
ENSTRUG00000002210	polr1a	99	68.063	ENSLOCG00000010881	polr1a	100	66.974	Lepisosteus_oculatus
ENSTRUG00000002210	polr1a	99	64.100	ENSLAFG00000014948	POLR1A	100	63.947	Loxodonta_africana
ENSTRUG00000002210	polr1a	99	63.736	ENSMFAG00000046097	POLR1A	100	64.055	Macaca_fascicularis
ENSTRUG00000002210	polr1a	99	63.794	ENSMMUG00000015815	POLR1A	100	64.113	Macaca_mulatta
ENSTRUG00000002210	polr1a	99	63.736	ENSMNEG00000043313	POLR1A	100	64.055	Macaca_nemestrina
ENSTRUG00000002210	polr1a	99	63.364	ENSMLEG00000042428	POLR1A	100	63.809	Mandrillus_leucophaeus
ENSTRUG00000002210	polr1a	99	80.000	ENSMAMG00000016565	polr1a	100	80.000	Mastacembelus_armatus
ENSTRUG00000002210	polr1a	99	79.280	ENSMZEG00005004915	polr1a	100	79.280	Maylandia_zebra
ENSTRUG00000002210	polr1a	97	63.608	ENSMGAG00000013111	POLR1A	99	60.507	Meleagris_gallopavo
ENSTRUG00000002210	polr1a	91	63.538	ENSMAUG00000008497	Polr1a	99	62.751	Mesocricetus_auratus
ENSTRUG00000002210	polr1a	97	65.231	ENSMICG00000000757	POLR1A	100	63.841	Microcebus_murinus
ENSTRUG00000002210	polr1a	99	63.689	ENSMOCG00000000122	Polr1a	100	63.825	Microtus_ochrogaster
ENSTRUG00000002210	polr1a	99	78.433	ENSMMOG00000010216	polr1a	100	78.916	Mola_mola
ENSTRUG00000002210	polr1a	97	64.338	ENSMODG00000009335	POLR1A	100	60.667	Monodelphis_domestica
ENSTRUG00000002210	polr1a	99	78.736	ENSMALG00000013363	polr1a	100	78.643	Monopterus_albus
ENSTRUG00000002210	polr1a	99	63.415	MGP_CAROLIEiJ_G0028494	Polr1a	100	63.042	Mus_caroli
ENSTRUG00000002210	polr1a	99	63.298	ENSMUSG00000049553	Polr1a	100	62.811	Mus_musculus
ENSTRUG00000002210	polr1a	99	62.967	MGP_PahariEiJ_G0022230	Polr1a	100	62.903	Mus_pahari
ENSTRUG00000002210	polr1a	97	64.129	MGP_SPRETEiJ_G0029499	Polr1a	100	61.600	Mus_spretus
ENSTRUG00000002210	polr1a	97	66.071	ENSMPUG00000009135	POLR1A	100	64.852	Mustela_putorius_furo
ENSTRUG00000002210	polr1a	99	63.358	ENSMLUG00000015723	POLR1A	100	63.043	Myotis_lucifugus
ENSTRUG00000002210	polr1a	99	63.109	ENSNGAG00000017907	Polr1a	100	63.185	Nannospalax_galili
ENSTRUG00000002210	polr1a	99	79.162	ENSNBRG00000000519	polr1a	100	78.950	Neolamprologus_brichardi
ENSTRUG00000002210	polr1a	99	61.940	ENSNLEG00000002264	POLR1A	100	62.156	Nomascus_leucogenys
ENSTRUG00000002210	polr1a	80	81.928	ENSMEUG00000011665	-	75	80.315	Notamacropus_eugenii
ENSTRUG00000002210	polr1a	97	60.568	ENSOPRG00000008269	POLR1A	100	58.641	Ochotona_princeps
ENSTRUG00000002210	polr1a	99	63.343	ENSODEG00000003542	POLR1A	100	63.668	Octodon_degus
ENSTRUG00000002210	polr1a	99	79.083	ENSONIG00000015895	polr1a	100	79.353	Oreochromis_niloticus
ENSTRUG00000002210	polr1a	75	59.264	ENSOANG00000012384	-	99	59.401	Ornithorhynchus_anatinus
ENSTRUG00000002210	polr1a	99	63.097	ENSOCUG00000010138	POLR1A	100	63.626	Oryctolagus_cuniculus
ENSTRUG00000002210	polr1a	99	76.582	ENSORLG00000008753	polr1a	99	76.210	Oryzias_latipes
ENSTRUG00000002210	polr1a	99	74.364	ENSORLG00020020726	polr1a	99	74.291	Oryzias_latipes_hni
ENSTRUG00000002210	polr1a	95	87.234	ENSORLG00015016071	polr1a	98	87.234	Oryzias_latipes_hsok
ENSTRUG00000002210	polr1a	97	65.546	ENSOGAG00000004031	POLR1A	100	63.479	Otolemur_garnettii
ENSTRUG00000002210	polr1a	97	65.618	ENSOARG00000020601	POLR1A	100	63.746	Ovis_aries
ENSTRUG00000002210	polr1a	99	64.331	ENSPPAG00000042450	POLR1A	100	63.767	Pan_paniscus
ENSTRUG00000002210	polr1a	99	64.423	ENSPPRG00000006702	POLR1A	100	64.522	Panthera_pardus
ENSTRUG00000002210	polr1a	99	64.025	ENSPTIG00000018783	POLR1A	100	64.125	Panthera_tigris_altaica
ENSTRUG00000002210	polr1a	99	63.652	ENSPTRG00000012147	POLR1A	100	64.430	Pan_troglodytes
ENSTRUG00000002210	polr1a	99	63.552	ENSPANG00000025908	POLR1A	100	63.998	Papio_anubis
ENSTRUG00000002210	polr1a	99	68.387	ENSPKIG00000005468	polr1a	99	70.833	Paramormyrops_kingsleyae
ENSTRUG00000002210	polr1a	63	62.953	ENSPSIG00000009321	-	99	64.093	Pelodiscus_sinensis
ENSTRUG00000002210	polr1a	96	74.729	ENSPMGG00000009718	polr1a	95	78.370	Periophthalmus_magnuspinnatus
ENSTRUG00000002210	polr1a	99	63.436	ENSPEMG00000022224	Polr1a	100	63.249	Peromyscus_maniculatus_bairdii
ENSTRUG00000002210	polr1a	97	64.627	ENSPCIG00000004222	POLR1A	99	63.748	Phascolarctos_cinereus
ENSTRUG00000002210	polr1a	99	76.751	ENSPFOG00000005025	polr1a	100	76.457	Poecilia_formosa
ENSTRUG00000002210	polr1a	99	76.828	ENSPLAG00000021389	polr1a	100	76.519	Poecilia_latipinna
ENSTRUG00000002210	polr1a	99	74.266	ENSPMEG00000006463	polr1a	100	74.618	Poecilia_mexicana
ENSTRUG00000002210	polr1a	99	76.381	ENSPREG00000002389	polr1a	100	76.028	Poecilia_reticulata
ENSTRUG00000002210	polr1a	99	63.322	ENSPPYG00000012217	POLR1A	100	63.652	Pongo_abelii
ENSTRUG00000002210	polr1a	83	71.739	ENSPCAG00000011582	POLR1A	91	63.043	Procavia_capensis
ENSTRUG00000002210	polr1a	97	65.336	ENSPCOG00000026987	POLR1A	100	63.725	Propithecus_coquereli
ENSTRUG00000002210	polr1a	95	62.656	ENSPVAG00000012674	POLR1A	95	63.150	Pteropus_vampyrus
ENSTRUG00000002210	polr1a	99	79.221	ENSPNYG00000000026	polr1a	100	79.221	Pundamilia_nyererei
ENSTRUG00000002210	polr1a	99	69.848	ENSPNAG00000019223	polr1a	100	69.725	Pygocentrus_nattereri
ENSTRUG00000002210	polr1a	99	62.816	ENSRNOG00000009545	Polr1a	100	62.867	Rattus_norvegicus
ENSTRUG00000002210	polr1a	99	63.725	ENSRBIG00000028335	POLR1A	100	64.207	Rhinopithecus_bieti
ENSTRUG00000002210	polr1a	99	63.783	ENSRROG00000031473	POLR1A	100	64.265	Rhinopithecus_roxellana
ENSTRUG00000002210	polr1a	97	37.687	YOR341W	RPA190	99	35.678	Saccharomyces_cerevisiae
ENSTRUG00000002210	polr1a	99	63.868	ENSSBOG00000030262	POLR1A	100	64.257	Saimiri_boliviensis_boliviensis
ENSTRUG00000002210	polr1a	99	59.240	ENSSHAG00000014739	POLR1A	100	59.804	Sarcophilus_harrisii
ENSTRUG00000002210	polr1a	99	68.440	ENSSFOG00015019716	polr1a	100	68.440	Scleropages_formosus
ENSTRUG00000002210	polr1a	99	79.329	ENSSMAG00000014342	polr1a	100	79.658	Scophthalmus_maximus
ENSTRUG00000002210	polr1a	99	80.803	ENSSDUG00000014631	polr1a	100	81.040	Seriola_dumerili
ENSTRUG00000002210	polr1a	99	77.594	ENSSLDG00000024095	polr1a	100	78.125	Seriola_lalandi_dorsalis
ENSTRUG00000002210	polr1a	67	90.244	ENSSARG00000003136	-	70	90.244	Sorex_araneus
ENSTRUG00000002210	polr1a	95	69.500	ENSSPUG00000004215	POLR1A	98	69.500	Sphenodon_punctatus
ENSTRUG00000002210	polr1a	96	76.406	ENSSPAG00000016341	polr1a	96	79.473	Stegastes_partitus
ENSTRUG00000002210	polr1a	97	65.094	ENSSSCG00000008226	POLR1A	99	65.618	Sus_scrofa
ENSTRUG00000002210	polr1a	99	62.715	ENSTGUG00000010704	POLR1A	100	62.581	Taeniopygia_guttata
ENSTRUG00000002210	polr1a	99	79.895	ENSTNIG00000010116	polr1a	100	79.883	Tetraodon_nigroviridis
ENSTRUG00000002210	polr1a	74	79.204	ENSTBEG00000008646	POLR1A	74	79.204	Tupaia_belangeri
ENSTRUG00000002210	polr1a	99	61.869	ENSTTRG00000008597	POLR1A	100	61.162	Tursiops_truncatus
ENSTRUG00000002210	polr1a	69	63.812	ENSUAMG00000012158	-	94	64.524	Ursus_americanus
ENSTRUG00000002210	polr1a	96	67.686	ENSUMAG00000006700	POLR1A	97	67.945	Ursus_maritimus
ENSTRUG00000002210	polr1a	97	65.546	ENSVVUG00000001245	POLR1A	100	64.501	Vulpes_vulpes
ENSTRUG00000002210	polr1a	99	60.757	ENSXETG00000001952	polr1a	100	62.805	Xenopus_tropicalis
ENSTRUG00000002210	polr1a	72	83.661	ENSXCOG00000013384	polr1a	90	83.661	Xiphophorus_couchianus
ENSTRUG00000002210	polr1a	99	75.911	ENSXMAG00000004032	polr1a	100	75.485	Xiphophorus_maculatus