EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000002519 (Gene tree)
Gene ID: 101066556
Gene Symbol: srrm1
Alias: wu:fb34f04|wu:fb38b06|zgc:63802
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 8129 bases
Position: chr2:9709963-9718091
Accession: 101066556
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000005845	PWI	PF01480.17	9.5e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000005881	-	3775	XM_011615704	ENSTRUP00000005845	853 (aa)	XP_011614006	H2S0C4

Gene Model

Click here to download ENSTRUG00000002519's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03013	RNA transport	KEGG
tru03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000002519's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000002519	srrm1	60	80.971	ENSAPOG00000001170	srrm1	99	96.154	Acanthochromis_polyacanthus
ENSTRUG00000002519	srrm1	60	82.012	ENSAOCG00000021757	srrm1	100	73.743	Amphiprion_ocellaris
ENSTRUG00000002519	srrm1	60	81.431	ENSAPEG00000018964	srrm1	100	73.184	Amphiprion_percula
ENSTRUG00000002519	srrm1	100	75.376	ENSATEG00000007659	srrm1	100	68.587	Anabas_testudineus
ENSTRUG00000002519	srrm1	58	48.662	ENSDARG00000001244	srrm1	99	92.308	Danio_rerio
ENSTRUG00000002519	srrm1	67	69.892	ENSGMOG00000019099	srrm1	92	70.250	Gadus_morhua
ENSTRUG00000002519	srrm1	60	74.806	ENSGACG00000007266	srrm1	74	86.387	Gasterosteus_aculeatus
ENSTRUG00000002519	srrm1	55	82.105	ENSLBEG00000013936	srrm1	100	63.597	Labrus_bergylta
ENSTRUG00000002519	srrm1	100	75.231	ENSMAMG00000010305	srrm1	100	70.346	Mastacembelus_armatus
ENSTRUG00000002519	srrm1	66	73.835	ENSPKIG00000008252	srrm1	62	72.438	Paramormyrops_kingsleyae
ENSTRUG00000002519	srrm1	65	78.358	ENSPLAG00000002058	srrm1	77	96.154	Poecilia_latipinna
ENSTRUG00000002519	srrm1	65	78.358	ENSPLAG00000006807	srrm1	99	96.154	Poecilia_latipinna
ENSTRUG00000002519	srrm1	56	68.247	ENSPMEG00000002603	srrm1	96	70.513	Poecilia_mexicana
ENSTRUG00000002519	srrm1	100	77.110	ENSSDUG00000012967	srrm1	100	64.637	Seriola_dumerili
ENSTRUG00000002519	srrm1	100	76.328	ENSSLDG00000012771	srrm1	100	72.666	Seriola_lalandi_dorsalis
ENSTRUG00000002519	srrm1	100	77.483	ENSSPAG00000009507	srrm1	100	72.910	Stegastes_partitus
ENSTRUG00000002519	srrm1	99	87.573	ENSTNIG00000016909	srrm1	100	88.511	Tetraodon_nigroviridis