EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000003051 (Gene tree)
Gene ID: 101078406
Gene Symbol: -
Alias: -
Full Name: Aly/REF export factor
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 7847 bases
Position: chr17:3485872-3493718
Accession: 101078406
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000049492	RRM_1	PF00076.22	1.6e-16	1	1
ENSTRUP00000007125	RRM_1	PF00076.22	1.8e-16	1	1
ENSTRUP00000007125	FYTT	PF07078.11	3.2e-05	1	1
ENSTRUP00000049492	FYTT	PF07078.11	5.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000007170	-	3015	-	ENSTRUP00000007125	267 (aa)	-	H2S403
ENSTRUT00000057260	-	3282	XM_011612542	ENSTRUP00000049492	252 (aa)	XP_011610844	UPI0005D24992
ENSTRUT00000005971	-	567	XM_003972124	ENSTRUP00000005935	188 (aa)	XP_003972173	H2S0L4

Gene Model

Click here to download ENSTRUG00000003051's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03013	RNA transport	KEGG
tru03015	mRNA surveillance pathway	KEGG
tru03040	Spliceosome	KEGG
tru05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000003051's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000003051	-	100	44.816	ENSTRUG00000008828	ALYREF	100	51.812

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000003051	-	100	62.835	ENSAPOG00000000183	-	100	66.288	Acanthochromis_polyacanthus
ENSTRUG00000003051	-	100	59.041	ENSACIG00000020351	-	100	59.779	Amphilophus_citrinellus
ENSTRUG00000003051	-	99	48.014	ENSACIG00000006351	alyref	98	48.944	Amphilophus_citrinellus
ENSTRUG00000003051	-	100	49.640	ENSAOCG00000014012	alyref	100	51.064	Amphiprion_ocellaris
ENSTRUG00000003051	-	100	61.977	ENSAOCG00000019305	-	100	64.794	Amphiprion_ocellaris
ENSTRUG00000003051	-	100	49.640	ENSAPEG00000014603	alyref	100	51.064	Amphiprion_percula
ENSTRUG00000003051	-	100	62.357	ENSAPEG00000013527	-	100	63.433	Amphiprion_percula
ENSTRUG00000003051	-	100	62.921	ENSATEG00000000382	-	100	64.794	Anabas_testudineus
ENSTRUG00000003051	-	100	49.286	ENSATEG00000004307	alyref	100	51.399	Anabas_testudineus
ENSTRUG00000003051	-	56	51.634	ENSAPLG00000014745	-	99	55.034	Anas_platyrhynchos
ENSTRUG00000003051	-	100	48.201	ENSACLG00000008432	alyref	100	48.763	Astatotilapia_calliptera
ENSTRUG00000003051	-	100	60.294	ENSACLG00000010184	-	100	62.500	Astatotilapia_calliptera
ENSTRUG00000003051	-	100	48.239	ENSAMXG00000007359	alyref	100	50.685	Astyanax_mexicanus
ENSTRUG00000003051	-	99	41.045	ENSCING00000013568	-	99	41.489	Ciona_intestinalis
ENSTRUG00000003051	-	99	41.762	ENSCSAVG00000003324	-	99	44.061	Ciona_savignyi
ENSTRUG00000003051	-	100	51.095	ENSCSEG00000017800	alyref	100	52.143	Cynoglossus_semilaevis
ENSTRUG00000003051	-	100	50.181	ENSCVAG00000014869	alyref	100	52.650	Cyprinodon_variegatus
ENSTRUG00000003051	-	100	56.489	ENSCVAG00000007789	-	100	59.316	Cyprinodon_variegatus
ENSTRUG00000003051	-	100	45.541	ENSDARG00000077732	alyref	100	50.171	Danio_rerio
ENSTRUG00000003051	-	99	38.732	FBgn0010774	Ref1	98	38.202	Drosophila_melanogaster
ENSTRUG00000003051	-	100	41.667	ENSEBUG00000006305	alyref	100	42.379	Eptatretus_burgeri
ENSTRUG00000003051	-	99	44.195	ENSEBUG00000008253	alyref	95	45.956	Eptatretus_burgeri
ENSTRUG00000003051	-	100	54.647	ENSELUG00000008849	-	100	55.019	Esox_lucius
ENSTRUG00000003051	-	100	51.254	ENSELUG00000017178	alyref	100	51.056	Esox_lucius
ENSTRUG00000003051	-	64	55.952	ENSFALG00000011923	-	99	56.140	Ficedula_albicollis
ENSTRUG00000003051	-	100	58.397	ENSFHEG00000004698	-	100	61.597	Fundulus_heteroclitus
ENSTRUG00000003051	-	100	50.719	ENSFHEG00000019426	alyref	100	50.352	Fundulus_heteroclitus
ENSTRUG00000003051	-	100	51.301	ENSGMOG00000009882	alyref	100	52.416	Gadus_morhua
ENSTRUG00000003051	-	73	65.104	ENSGMOG00000013122	-	100	65.104	Gadus_morhua
ENSTRUG00000003051	-	100	55.556	ENSGAFG00000007573	-	100	57.634	Gambusia_affinis
ENSTRUG00000003051	-	100	47.552	ENSGAFG00000006014	alyref	100	49.477	Gambusia_affinis
ENSTRUG00000003051	-	100	48.201	ENSHBUG00000020196	alyref	100	48.763	Haplochromis_burtoni
ENSTRUG00000003051	-	100	60.584	ENSHBUG00000001454	-	100	62.409	Haplochromis_burtoni
ENSTRUG00000003051	-	99	56.202	ENSHCOG00000012825	-	95	57.364	Hippocampus_comes
ENSTRUG00000003051	-	100	51.429	ENSIPUG00000009469	alyref	99	51.429	Ictalurus_punctatus
ENSTRUG00000003051	-	79	53.922	ENSSTOG00000016570	-	99	52.709	Ictidomys_tridecemlineatus
ENSTRUG00000003051	-	100	49.648	ENSKMAG00000008912	alyref	100	50.526	Kryptolebias_marmoratus
ENSTRUG00000003051	-	100	57.471	ENSKMAG00000006462	-	100	59.398	Kryptolebias_marmoratus
ENSTRUG00000003051	-	99	59.551	ENSLBEG00000012930	-	99	63.780	Labrus_bergylta
ENSTRUG00000003051	-	100	53.282	ENSLBEG00000023118	alyref	90	52.490	Labrus_bergylta
ENSTRUG00000003051	-	100	58.824	ENSLBEG00000005387	-	100	64.945	Labrus_bergylta
ENSTRUG00000003051	-	84	53.097	ENSLOCG00000013879	alyref	99	52.209	Lepisosteus_oculatus
ENSTRUG00000003051	-	100	64.015	ENSMAMG00000005464	-	100	64.151	Mastacembelus_armatus
ENSTRUG00000003051	-	100	49.097	ENSMAMG00000003034	alyref	100	51.601	Mastacembelus_armatus
ENSTRUG00000003051	-	100	48.201	ENSMZEG00005008639	alyref	100	48.763	Maylandia_zebra
ENSTRUG00000003051	-	100	59.559	ENSMZEG00005012096	-	100	61.765	Maylandia_zebra
ENSTRUG00000003051	-	99	46.644	ENSMMOG00000012458	alyref	97	49.823	Mola_mola
ENSTRUG00000003051	-	99	57.874	ENSMMOG00000007032	-	98	58.268	Mola_mola
ENSTRUG00000003051	-	100	60.000	ENSMALG00000006054	-	100	62.030	Monopterus_albus
ENSTRUG00000003051	-	100	46.296	ENSMLUG00000004098	-	100	48.897	Myotis_lucifugus
ENSTRUG00000003051	-	98	46.595	ENSMLUG00000022467	-	98	48.175	Myotis_lucifugus
ENSTRUG00000003051	-	100	45.487	ENSMLUG00000014372	-	100	46.209	Myotis_lucifugus
ENSTRUG00000003051	-	98	42.599	ENSMLUG00000022178	-	98	43.262	Myotis_lucifugus
ENSTRUG00000003051	-	98	44.867	ENSMLUG00000009247	-	98	45.627	Myotis_lucifugus
ENSTRUG00000003051	-	76	51.031	ENSMLUG00000030671	-	99	43.662	Myotis_lucifugus
ENSTRUG00000003051	-	100	45.091	ENSMLUG00000006521	-	100	47.292	Myotis_lucifugus
ENSTRUG00000003051	-	100	53.150	ENSNGAG00000022014	-	100	54.118	Nannospalax_galili
ENSTRUG00000003051	-	100	60.370	ENSNBRG00000017460	-	100	62.868	Neolamprologus_brichardi
ENSTRUG00000003051	-	100	47.857	ENSNBRG00000001747	alyref	100	48.780	Neolamprologus_brichardi
ENSTRUG00000003051	-	100	48.936	ENSONIG00000019434	alyref	100	48.780	Oreochromis_niloticus
ENSTRUG00000003051	-	100	61.111	ENSONIG00000003296	-	100	63.100	Oreochromis_niloticus
ENSTRUG00000003051	-	99	47.619	ENSORLG00000001620	-	88	49.838	Oryzias_latipes
ENSTRUG00000003051	-	100	50.714	ENSORLG00020011942	alyref	100	51.579	Oryzias_latipes_hni
ENSTRUG00000003051	-	100	56.410	ENSORLG00020015673	-	100	59.091	Oryzias_latipes_hni
ENSTRUG00000003051	-	100	51.079	ENSORLG00015022664	alyref	100	51.943	Oryzias_latipes_hsok
ENSTRUG00000003051	-	100	58.608	ENSORLG00015015143	-	100	61.049	Oryzias_latipes_hsok
ENSTRUG00000003051	-	99	57.414	ENSOMEG00000007158	-	97	59.696	Oryzias_melastigma
ENSTRUG00000003051	-	100	50.530	ENSOMEG00000019176	alyref	100	50.000	Oryzias_melastigma
ENSTRUG00000003051	-	74	55.026	ENSPPAG00000036403	-	68	58.201	Pan_paniscus
ENSTRUG00000003051	-	100	51.273	ENSPKIG00000007070	alyref	100	53.114	Paramormyrops_kingsleyae
ENSTRUG00000003051	-	99	52.434	ENSPKIG00000006233	-	81	53.358	Paramormyrops_kingsleyae
ENSTRUG00000003051	-	99	51.087	ENSPMGG00000016600	alyref	91	51.601	Periophthalmus_magnuspinnatus
ENSTRUG00000003051	-	63	59.880	ENSPMGG00000012994	-	93	60.479	Periophthalmus_magnuspinnatus
ENSTRUG00000003051	-	100	52.362	ENSPEMG00000016628	-	100	54.510	Peromyscus_maniculatus_bairdii
ENSTRUG00000003051	-	100	49.826	ENSPFOG00000022825	alyref	99	51.042	Poecilia_formosa
ENSTRUG00000003051	-	100	56.870	ENSPFOG00000017094	-	100	58.175	Poecilia_formosa
ENSTRUG00000003051	-	100	56.870	ENSPLAG00000014380	-	100	58.175	Poecilia_latipinna
ENSTRUG00000003051	-	100	48.951	ENSPLAG00000006948	alyref	100	51.220	Poecilia_latipinna
ENSTRUG00000003051	-	100	56.870	ENSPMEG00000023039	-	100	58.175	Poecilia_mexicana
ENSTRUG00000003051	-	100	49.826	ENSPMEG00000003547	alyref	100	51.042	Poecilia_mexicana
ENSTRUG00000003051	-	100	49.301	ENSPREG00000015795	alyref	100	51.220	Poecilia_reticulata
ENSTRUG00000003051	-	100	56.274	ENSPREG00000003649	-	100	59.470	Poecilia_reticulata
ENSTRUG00000003051	-	99	55.805	ENSPNYG00000002879	-	98	58.736	Pundamilia_nyererei
ENSTRUG00000003051	-	100	48.201	ENSPNYG00000017498	alyref	100	48.763	Pundamilia_nyererei
ENSTRUG00000003051	-	100	51.211	ENSPNAG00000002531	alyref	100	54.007	Pygocentrus_nattereri
ENSTRUG00000003051	-	75	56.771	ENSSBOG00000030924	-	84	58.854	Saimiri_boliviensis_boliviensis
ENSTRUG00000003051	-	99	44.280	ENSSHAG00000012866	-	99	42.481	Sarcophilus_harrisii
ENSTRUG00000003051	-	99	44.800	ENSSHAG00000000609	-	99	44.400	Sarcophilus_harrisii
ENSTRUG00000003051	-	76	56.219	ENSSFOG00015003923	alyref	75	54.348	Scleropages_formosus
ENSTRUG00000003051	-	78	54.950	ENSSFOG00015003678	alyref	88	54.854	Scleropages_formosus
ENSTRUG00000003051	-	100	66.288	ENSSMAG00000011169	-	98	69.101	Scophthalmus_maximus
ENSTRUG00000003051	-	100	48.571	ENSSMAG00000009283	alyref	100	50.000	Scophthalmus_maximus
ENSTRUG00000003051	-	100	49.281	ENSSDUG00000016158	alyref	100	51.943	Seriola_dumerili
ENSTRUG00000003051	-	100	47.842	ENSSLDG00000017803	alyref	100	51.943	Seriola_lalandi_dorsalis
ENSTRUG00000003051	-	99	62.835	ENSSPAG00000017028	-	96	66.031	Stegastes_partitus
ENSTRUG00000003051	-	100	49.466	ENSTNIG00000011595	alyref	100	53.668	Tetraodon_nigroviridis
ENSTRUG00000003051	-	100	77.470	ENSTNIG00000014136	-	100	75.494	Tetraodon_nigroviridis
ENSTRUG00000003051	-	75	56.477	ENSVVUG00000000272	-	100	53.879	Vulpes_vulpes
ENSTRUG00000003051	-	99	46.643	ENSXCOG00000018047	alyref	99	48.084	Xiphophorus_couchianus
ENSTRUG00000003051	-	99	46.643	ENSXMAG00000012218	alyref	99	48.084	Xiphophorus_maculatus
ENSTRUG00000003051	-	100	57.252	ENSXMAG00000018086	-	100	58.397	Xiphophorus_maculatus