EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000003076 (Gene tree)
Gene ID: 101070476
Gene Symbol: rbm25a
Alias: si:ch211-12d10.5
Full Name: RNA-binding protein 25-like
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 8513 bases
Position: chrHE591912.1:3566-12078
Accession: 101070476
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000007182	RRM_1	PF00076.22	1.2e-08	1	1
ENSTRUP00000007184	RRM_1	PF00076.22	1.3e-08	1	1
ENSTRUP00000007183	RRM_1	PF00076.22	1.4e-08	1	1
ENSTRUP00000007182	PWI	PF01480.17	3.1e-14	1	1
ENSTRUP00000007184	PWI	PF01480.17	3.4e-14	1	1
ENSTRUP00000007183	PWI	PF01480.17	3.5e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000007227	-	4056	-	ENSTRUP00000007182	774 (aa)	-	H2S460
ENSTRUT00000007228	-	3457	XM_011617132	ENSTRUP00000007183	837 (aa)	XP_011615434	H2S461
ENSTRUT00000007229	-	3388	XM_011617134	ENSTRUP00000007184	814 (aa)	XP_011615436	H2S462

Gene Model

Click here to download ENSTRUG00000003076's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000003076's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000003076	rbm25a	63	68.443	ENSTRUG00000017964	rbm25b	58	72.479

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000003076	rbm25a	59	83.516	ENSAPOG00000017757	rbm25a	57	83.476	Acanthochromis_polyacanthus
ENSTRUG00000003076	rbm25a	59	83.772	ENSACIG00000019482	rbm25a	56	83.441	Amphilophus_citrinellus
ENSTRUG00000003076	rbm25a	60	66.245	ENSACIG00000014178	rbm25b	56	67.442	Amphilophus_citrinellus
ENSTRUG00000003076	rbm25a	59	81.236	ENSAOCG00000013695	rbm25a	55	81.250	Amphiprion_ocellaris
ENSTRUG00000003076	rbm25a	60	67.735	ENSAOCG00000019308	rbm25b	56	69.444	Amphiprion_ocellaris
ENSTRUG00000003076	rbm25a	59	82.789	ENSAPEG00000007514	rbm25a	57	82.979	Amphiprion_percula
ENSTRUG00000003076	rbm25a	64	65.200	ENSAPEG00000009666	rbm25b	60	71.642	Amphiprion_percula
ENSTRUG00000003076	rbm25a	60	83.691	ENSATEG00000020676	rbm25a	63	82.609	Anabas_testudineus
ENSTRUG00000003076	rbm25a	60	71.915	ENSATEG00000017312	rbm25b	57	72.727	Anabas_testudineus
ENSTRUG00000003076	rbm25a	60	71.459	ENSACLG00000024359	rbm25b	57	72.939	Astatotilapia_calliptera
ENSTRUG00000003076	rbm25a	100	71.954	ENSACLG00000027482	rbm25a	89	76.639	Astatotilapia_calliptera
ENSTRUG00000003076	rbm25a	58	70.711	ENSAMXG00000024525	rbm25b	56	73.362	Astyanax_mexicanus
ENSTRUG00000003076	rbm25a	57	32.889	WBGene00012245	W04D2.6	85	31.702	Caenorhabditis_elegans
ENSTRUG00000003076	rbm25a	59	83.784	ENSCHOG00000008903	RBM25	63	83.333	Choloepus_hoffmanni
ENSTRUG00000003076	rbm25a	62	69.780	ENSCGRG00001020817	Rbm25	100	61.211	Cricetulus_griseus_chok1gshd
ENSTRUG00000003076	rbm25a	60	70.675	ENSCSEG00000020737	rbm25b	58	72.068	Cynoglossus_semilaevis
ENSTRUG00000003076	rbm25a	59	79.212	ENSCSEG00000009430	rbm25a	57	79.212	Cynoglossus_semilaevis
ENSTRUG00000003076	rbm25a	76	72.998	ENSCVAG00000005498	rbm25a	99	77.975	Cyprinodon_variegatus
ENSTRUG00000003076	rbm25a	56	64.155	ENSDARG00000039266	rbm25a	99	97.468	Danio_rerio
ENSTRUG00000003076	rbm25a	62	70.577	ENSDARG00000006395	rbm25b	57	70.807	Danio_rerio
ENSTRUG00000003076	rbm25a	59	64.706	ENSELUG00000021847	rbm25a	52	64.163	Esox_lucius
ENSTRUG00000003076	rbm25a	58	71.800	ENSELUG00000007730	rbm25b	58	71.933	Esox_lucius
ENSTRUG00000003076	rbm25a	100	76.843	ENSFHEG00000005318	rbm25a	91	78.755	Fundulus_heteroclitus
ENSTRUG00000003076	rbm25a	60	71.308	ENSFHEG00000003513	rbm25b	58	73.207	Fundulus_heteroclitus
ENSTRUG00000003076	rbm25a	59	80.392	ENSGMOG00000014070	rbm25a	83	75.536	Gadus_morhua
ENSTRUG00000003076	rbm25a	87	72.807	ENSGMOG00000014097	rbm25b	53	72.807	Gadus_morhua
ENSTRUG00000003076	rbm25a	100	77.805	ENSGAFG00000018036	rbm25a	56	76.582	Gambusia_affinis
ENSTRUG00000003076	rbm25a	99	70.460	ENSGAFG00000001092	rbm25b	51	73.474	Gambusia_affinis
ENSTRUG00000003076	rbm25a	60	71.670	ENSHBUG00000018499	rbm25b	57	73.150	Haplochromis_burtoni
ENSTRUG00000003076	rbm25a	59	83.333	ENSHBUG00000016908	rbm25a	56	83.226	Haplochromis_burtoni
ENSTRUG00000003076	rbm25a	100	66.387	ENSHCOG00000000142	rbm25b	57	67.689	Hippocampus_comes
ENSTRUG00000003076	rbm25a	50	57.143	ENSHCOG00000018433	rbm25a	50	80.237	Hippocampus_comes
ENSTRUG00000003076	rbm25a	99	77.734	ENSKMAG00000016242	rbm25a	57	78.091	Kryptolebias_marmoratus
ENSTRUG00000003076	rbm25a	57	72.354	ENSKMAG00000018826	rbm25b	57	72.669	Kryptolebias_marmoratus
ENSTRUG00000003076	rbm25a	100	68.712	ENSLBEG00000010667	rbm25b	57	71.458	Labrus_bergylta
ENSTRUG00000003076	rbm25a	57	67.111	ENSLOCG00000014196	rbm25b	55	70.231	Lepisosteus_oculatus
ENSTRUG00000003076	rbm25a	60	70.127	ENSMAMG00000004524	rbm25b	57	72.363	Mastacembelus_armatus
ENSTRUG00000003076	rbm25a	56	77.136	ENSMAMG00000000165	rbm25a	51	78.353	Mastacembelus_armatus
ENSTRUG00000003076	rbm25a	60	71.459	ENSMZEG00005001453	rbm25b	57	72.939	Maylandia_zebra
ENSTRUG00000003076	rbm25a	59	83.333	ENSMZEG00005011183	rbm25a	56	83.226	Maylandia_zebra
ENSTRUG00000003076	rbm25a	97	71.277	ENSMMOG00000015545	rbm25b	64	70.747	Mola_mola
ENSTRUG00000003076	rbm25a	60	80.472	ENSMMOG00000009065	rbm25a	56	81.505	Mola_mola
ENSTRUG00000003076	rbm25a	59	69.106	ENSMALG00000020441	rbm25b	89	72.421	Monopterus_albus
ENSTRUG00000003076	rbm25a	51	81.934	ENSMALG00000020459	rbm25a	90	81.934	Monopterus_albus
ENSTRUG00000003076	rbm25a	59	83.333	ENSNBRG00000003761	rbm25a	56	83.226	Neolamprologus_brichardi
ENSTRUG00000003076	rbm25a	53	73.973	ENSOPRG00000016744	-	51	79.592	Ochotona_princeps
ENSTRUG00000003076	rbm25a	100	61.495	ENSOCUG00000013737	RBM25	100	63.995	Oryctolagus_cuniculus
ENSTRUG00000003076	rbm25a	59	73.885	ENSORLG00000011874	rbm25b	56	74.894	Oryzias_latipes
ENSTRUG00000003076	rbm25a	51	77.863	ENSORLG00000009958	rbm25a	100	77.608	Oryzias_latipes
ENSTRUG00000003076	rbm25a	63	70.325	ENSORLG00020016422	rbm25b	56	74.627	Oryzias_latipes_hni
ENSTRUG00000003076	rbm25a	59	74.522	ENSORLG00015011269	rbm25b	56	75.532	Oryzias_latipes_hsok
ENSTRUG00000003076	rbm25a	83	72.894	ENSOMEG00000022138	rbm25a	58	79.381	Oryzias_melastigma
ENSTRUG00000003076	rbm25a	59	74.255	ENSOMEG00000023172	rbm25b	57	73.950	Oryzias_melastigma
ENSTRUG00000003076	rbm25a	58	73.673	ENSPKIG00000003203	rbm25b	57	74.786	Paramormyrops_kingsleyae
ENSTRUG00000003076	rbm25a	57	69.005	ENSPMGG00000001791	rbm25a	100	69.615	Periophthalmus_magnuspinnatus
ENSTRUG00000003076	rbm25a	60	71.670	ENSPMGG00000015740	rbm25b	58	72.093	Periophthalmus_magnuspinnatus
ENSTRUG00000003076	rbm25a	100	77.199	ENSPFOG00000017931	rbm25a	59	75.882	Poecilia_formosa
ENSTRUG00000003076	rbm25a	58	73.144	ENSPFOG00000018808	rbm25b	57	73.418	Poecilia_formosa
ENSTRUG00000003076	rbm25a	100	79.565	ENSPLAG00000018338	rbm25a	56	79.237	Poecilia_latipinna
ENSTRUG00000003076	rbm25a	51	71.782	ENSPMEG00000012262	rbm25b	99	72.750	Poecilia_mexicana
ENSTRUG00000003076	rbm25a	100	79.565	ENSPMEG00000024470	rbm25a	62	75.882	Poecilia_mexicana
ENSTRUG00000003076	rbm25a	58	73.144	ENSPMEG00000019161	rbm25b	57	73.207	Poecilia_mexicana
ENSTRUG00000003076	rbm25a	58	73.261	ENSPREG00000008522	rbm25b	57	73.529	Poecilia_reticulata
ENSTRUG00000003076	rbm25a	100	79.853	ENSPREG00000009228	rbm25a	59	77.273	Poecilia_reticulata
ENSTRUG00000003076	rbm25a	51	75.275	ENSPCAG00000006226	RBM25	79	70.753	Procavia_capensis
ENSTRUG00000003076	rbm25a	63	76.220	ENSPNYG00000022596	rbm25a	57	76.639	Pundamilia_nyererei
ENSTRUG00000003076	rbm25a	56	70.682	ENSPNAG00000012024	rbm25b	57	73.207	Pygocentrus_nattereri
ENSTRUG00000003076	rbm25a	57	73.932	ENSSFOG00015007093	rbm25	58	73.885	Scleropages_formosus
ENSTRUG00000003076	rbm25a	60	81.838	ENSSMAG00000009745	rbm25a	57	82.441	Scophthalmus_maximus
ENSTRUG00000003076	rbm25a	64	66.471	ENSSMAG00000002520	rbm25b	60	70.303	Scophthalmus_maximus
ENSTRUG00000003076	rbm25a	59	83.956	ENSSDUG00000017984	rbm25a	58	84.335	Seriola_dumerili
ENSTRUG00000003076	rbm25a	59	83.956	ENSSLDG00000010342	rbm25a	57	84.335	Seriola_lalandi_dorsalis
ENSTRUG00000003076	rbm25a	57	69.703	ENSSLDG00000024573	rbm25b	100	72.128	Seriola_lalandi_dorsalis
ENSTRUG00000003076	rbm25a	59	81.585	ENSSPAG00000011114	rbm25a	57	82.218	Stegastes_partitus
ENSTRUG00000003076	rbm25a	64	67.470	ENSSPAG00000016168	rbm25b	57	72.093	Stegastes_partitus
ENSTRUG00000003076	rbm25a	51	85.934	ENSTNIG00000004673	rbm25a	99	85.934	Tetraodon_nigroviridis
ENSTRUG00000003076	rbm25a	98	65.593	ENSTNIG00000012222	rbm25b	74	70.445	Tetraodon_nigroviridis
ENSTRUG00000003076	rbm25a	62	77.165	ENSTBEG00000010538	-	56	76.442	Tupaia_belangeri
ENSTRUG00000003076	rbm25a	51	69.620	ENSVPAG00000009052	RBM25	79	70.085	Vicugna_pacos
ENSTRUG00000003076	rbm25a	57	61.505	ENSXETG00000021857	rbm25	56	70.726	Xenopus_tropicalis
ENSTRUG00000003076	rbm25a	62	69.639	ENSXCOG00000002222	rbm25b	56	66.387	Xiphophorus_couchianus
ENSTRUG00000003076	rbm25a	100	78.417	ENSXCOG00000004043	RBM25	58	76.626	Xiphophorus_couchianus
ENSTRUG00000003076	rbm25a	100	77.986	ENSXMAG00000009077	RBM25	59	77.000	Xiphophorus_maculatus
ENSTRUG00000003076	rbm25a	100	68.802	ENSXMAG00000017290	rbm25b	57	73.166	Xiphophorus_maculatus