EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000003691 (Gene tree)
Gene ID: 101078166
Gene Symbol: srsf1a
Alias: sfrs1a|sfrs1l|wu:fb52g10|wu:fb97g12|zgc:66146
Full Name: serine and arginine rich splicing factor 1
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 2456 bases
Position: chr11:6737554-6740009
Accession: 101078166
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000008650	RRM_1	PF00076.22	4.2e-32	1	2
ENSTRUP00000008650	RRM_1	PF00076.22	4.2e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000008701	-	1597	XM_003968534	ENSTRUP00000008650	245 (aa)	XP_003968583	H2S8C5

Gene Model

Click here to download ENSTRUG00000003691's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03040	Spliceosome	KEGG
tru05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000003691's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000003691	srsf1a	66	46.951	ENSTRUG00000011891	srsf4	58	42.935
ENSTRUG00000003691	srsf1a	94	44.262	ENSTRUG00000012723	srsf9	77	42.727
ENSTRUG00000003691	srsf1a	78	84.896	ENSTRUG00000017058	-	79	85.938
ENSTRUG00000003691	srsf1a	67	41.622	ENSTRUG00000022908	srsf5a	60	41.622
ENSTRUG00000003691	srsf1a	64	45.294	ENSTRUG00000017811	srsf5b	54	44.444

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000003691	srsf1a	98	84.362	ENSG00000136450	SRSF1	95	91.935	Homo_sapiens
ENSTRUG00000003691	srsf1a	100	98.776	ENSAPOG00000002748	-	100	98.776	Acanthochromis_polyacanthus
ENSTRUG00000003691	srsf1a	78	87.958	ENSAPOG00000008542	-	80	87.437	Acanthochromis_polyacanthus
ENSTRUG00000003691	srsf1a	78	87.958	ENSAMEG00000002635	SRSF1	77	88.482	Ailuropoda_melanoleuca
ENSTRUG00000003691	srsf1a	100	92.653	ENSACIG00000008091	srsf1a	100	92.653	Amphilophus_citrinellus
ENSTRUG00000003691	srsf1a	100	99.184	ENSAOCG00000010671	-	100	99.184	Amphiprion_ocellaris
ENSTRUG00000003691	srsf1a	78	87.437	ENSAOCG00000000337	-	80	87.437	Amphiprion_ocellaris
ENSTRUG00000003691	srsf1a	78	87.437	ENSAPEG00000023352	-	79	87.437	Amphiprion_percula
ENSTRUG00000003691	srsf1a	100	99.184	ENSAPEG00000009915	-	100	99.184	Amphiprion_percula
ENSTRUG00000003691	srsf1a	100	98.381	ENSATEG00000022403	-	100	98.381	Anabas_testudineus
ENSTRUG00000003691	srsf1a	81	85.859	ENSATEG00000021567	-	80	88.021	Anabas_testudineus
ENSTRUG00000003691	srsf1a	78	88.601	ENSACAG00000005542	-	78	90.674	Anolis_carolinensis
ENSTRUG00000003691	srsf1a	98	84.362	ENSANAG00000020583	-	93	91.176	Aotus_nancymaae
ENSTRUG00000003691	srsf1a	79	66.495	ENSANAG00000025417	-	73	67.016	Aotus_nancymaae
ENSTRUG00000003691	srsf1a	95	80.335	ENSAMXG00000035996	srsf1a	79	88.384	Astyanax_mexicanus
ENSTRUG00000003691	srsf1a	53	72.903	ENSAMXG00000024373	-	72	76.774	Astyanax_mexicanus
ENSTRUG00000003691	srsf1a	98	84.362	ENSBTAG00000014766	SRSF1	78	91.192	Bos_taurus
ENSTRUG00000003691	srsf1a	78	81.865	ENSCJAG00000008111	-	86	82.902	Callithrix_jacchus
ENSTRUG00000003691	srsf1a	98	84.362	ENSCJAG00000041713	-	93	91.176	Callithrix_jacchus
ENSTRUG00000003691	srsf1a	98	84.362	ENSCAFG00000017430	SRSF1	76	91.192	Canis_familiaris
ENSTRUG00000003691	srsf1a	98	84.362	ENSCAFG00020025632	-	76	91.192	Canis_lupus_dingo
ENSTRUG00000003691	srsf1a	78	89.119	ENSCHIG00000010787	SRSF1	78	91.192	Capra_hircus
ENSTRUG00000003691	srsf1a	98	84.362	ENSTSYG00000013899	-	93	91.176	Carlito_syrichta
ENSTRUG00000003691	srsf1a	98	84.362	ENSCPOG00000032681	-	78	91.192	Cavia_porcellus
ENSTRUG00000003691	srsf1a	98	84.362	ENSCCAG00000029484	-	93	91.176	Cebus_capucinus
ENSTRUG00000003691	srsf1a	98	84.362	ENSCATG00000042294	-	93	91.176	Cercocebus_atys
ENSTRUG00000003691	srsf1a	98	84.362	ENSCLAG00000014707	-	78	91.192	Chinchilla_lanigera
ENSTRUG00000003691	srsf1a	98	83.539	ENSCSAG00000005642	-	76	90.155	Chlorocebus_sabaeus
ENSTRUG00000003691	srsf1a	78	89.119	ENSCHOG00000001899	SRSF1	78	91.192	Choloepus_hoffmanni
ENSTRUG00000003691	srsf1a	98	84.362	ENSCPBG00000009851	-	78	91.192	Chrysemys_picta_bellii
ENSTRUG00000003691	srsf1a	98	84.362	ENSCANG00000029726	-	93	91.176	Colobus_angolensis_palliatus
ENSTRUG00000003691	srsf1a	98	84.362	ENSCGRG00001000670	Srsf1	76	91.192	Cricetulus_griseus_chok1gshd
ENSTRUG00000003691	srsf1a	98	84.362	ENSCGRG00000005590	Srsf1	78	91.192	Cricetulus_griseus_crigri
ENSTRUG00000003691	srsf1a	78	81.731	ENSCSEG00000009973	-	79	81.731	Cynoglossus_semilaevis
ENSTRUG00000003691	srsf1a	100	90.612	ENSCSEG00000014272	-	99	90.612	Cynoglossus_semilaevis
ENSTRUG00000003691	srsf1a	78	86.082	ENSCVAG00000005458	-	90	86.264	Cyprinodon_variegatus
ENSTRUG00000003691	srsf1a	100	98.776	ENSCVAG00000018617	-	100	98.776	Cyprinodon_variegatus
ENSTRUG00000003691	srsf1a	78	89.637	ENSDARG00000017843	srsf1b	79	91.710	Danio_rerio
ENSTRUG00000003691	srsf1a	78	84.236	ENSDARG00000057691	srsf1a	99	85.864	Danio_rerio
ENSTRUG00000003691	srsf1a	98	84.362	ENSDNOG00000011737	-	76	91.192	Dasypus_novemcinctus
ENSTRUG00000003691	srsf1a	98	84.362	ENSDORG00000015082	Srsf1	78	91.192	Dipodomys_ordii
ENSTRUG00000003691	srsf1a	73	89.444	ENSETEG00000005349	-	62	90.556	Echinops_telfairi
ENSTRUG00000003691	srsf1a	98	84.362	ENSEASG00005002922	-	76	91.192	Equus_asinus_asinus
ENSTRUG00000003691	srsf1a	78	89.119	ENSECAG00000016654	SRSF1	78	91.192	Equus_caballus
ENSTRUG00000003691	srsf1a	73	90.556	ENSEEUG00000009255	-	62	91.667	Erinaceus_europaeus
ENSTRUG00000003691	srsf1a	78	92.708	ENSELUG00000021646	srsf1a	76	93.229	Esox_lucius
ENSTRUG00000003691	srsf1a	98	84.362	ENSFCAG00000002250	-	90	91.160	Felis_catus
ENSTRUG00000003691	srsf1a	78	94.340	ENSFALG00000005062	-	76	72.539	Ficedula_albicollis
ENSTRUG00000003691	srsf1a	98	84.362	ENSFDAG00000010646	-	78	91.192	Fukomys_damarensis
ENSTRUG00000003691	srsf1a	100	98.367	ENSFHEG00000003174	srsf1a	100	98.367	Fundulus_heteroclitus
ENSTRUG00000003691	srsf1a	80	88.776	ENSGMOG00000014787	-	80	87.958	Gadus_morhua
ENSTRUG00000003691	srsf1a	78	89.119	ENSGALG00000005525	SRSF1	78	91.192	Gallus_gallus
ENSTRUG00000003691	srsf1a	78	86.911	ENSGACG00000020621	srsf1b	78	86.387	Gasterosteus_aculeatus
ENSTRUG00000003691	srsf1a	98	84.362	ENSGAGG00000022965	-	76	91.192	Gopherus_agassizii
ENSTRUG00000003691	srsf1a	98	84.362	ENSGGOG00000004386	SRSF1	93	91.176	Gorilla_gorilla
ENSTRUG00000003691	srsf1a	100	98.776	ENSHBUG00000016788	srsf1a	100	98.776	Haplochromis_burtoni
ENSTRUG00000003691	srsf1a	66	88.415	ENSHGLG00000000600	-	76	90.854	Heterocephalus_glaber_female
ENSTRUG00000003691	srsf1a	66	88.415	ENSHGLG00000000669	-	76	90.854	Heterocephalus_glaber_female
ENSTRUG00000003691	srsf1a	98	84.362	ENSHGLG00100016906	-	78	91.192	Heterocephalus_glaber_male
ENSTRUG00000003691	srsf1a	79	89.447	ENSHCOG00000018918	srsf1a	78	90.955	Hippocampus_comes
ENSTRUG00000003691	srsf1a	78	89.062	ENSIPUG00000008750	srsf1b	78	91.667	Ictalurus_punctatus
ENSTRUG00000003691	srsf1a	79	86.070	ENSIPUG00000017039	srsf1a	80	88.060	Ictalurus_punctatus
ENSTRUG00000003691	srsf1a	98	84.362	ENSSTOG00000000243	-	96	87.047	Ictidomys_tridecemlineatus
ENSTRUG00000003691	srsf1a	98	84.362	ENSJJAG00000000102	-	78	91.192	Jaculus_jaculus
ENSTRUG00000003691	srsf1a	100	97.561	ENSKMAG00000019232	srsf1a	100	97.561	Kryptolebias_marmoratus
ENSTRUG00000003691	srsf1a	100	98.776	ENSLBEG00000020864	-	100	98.776	Labrus_bergylta
ENSTRUG00000003691	srsf1a	78	79.592	ENSLBEG00000015294	-	79	81.122	Labrus_bergylta
ENSTRUG00000003691	srsf1a	78	89.583	ENSLACG00000014160	srsf1a	72	89.583	Latimeria_chalumnae
ENSTRUG00000003691	srsf1a	78	88.542	ENSLOCG00000005994	srsf1a	78	91.667	Lepisosteus_oculatus
ENSTRUG00000003691	srsf1a	78	89.119	ENSLAFG00000025743	SRSF1	78	91.192	Loxodonta_africana
ENSTRUG00000003691	srsf1a	98	84.362	ENSMFAG00000040003	-	93	91.176	Macaca_fascicularis
ENSTRUG00000003691	srsf1a	99	81.148	ENSMMUG00000003260	-	93	88.542	Macaca_mulatta
ENSTRUG00000003691	srsf1a	98	84.362	ENSMMUG00000004725	SRSF1	93	91.176	Macaca_mulatta
ENSTRUG00000003691	srsf1a	99	81.557	ENSMNEG00000015983	-	76	88.601	Macaca_nemestrina
ENSTRUG00000003691	srsf1a	98	84.362	ENSMNEG00000027680	-	93	91.176	Macaca_nemestrina
ENSTRUG00000003691	srsf1a	98	82.158	ENSMLEG00000015243	-	76	86.911	Mandrillus_leucophaeus
ENSTRUG00000003691	srsf1a	78	89.119	ENSMLEG00000040509	SRSF1	78	91.192	Mandrillus_leucophaeus
ENSTRUG00000003691	srsf1a	78	91.146	ENSMAMG00000019691	-	80	90.625	Mastacembelus_armatus
ENSTRUG00000003691	srsf1a	78	89.005	ENSMAMG00000019687	-	78	89.005	Mastacembelus_armatus
ENSTRUG00000003691	srsf1a	100	99.184	ENSMAMG00000018454	-	100	99.184	Mastacembelus_armatus
ENSTRUG00000003691	srsf1a	98	84.362	ENSMAUG00000021845	Srsf1	78	91.192	Mesocricetus_auratus
ENSTRUG00000003691	srsf1a	98	84.362	ENSMICG00000013639	-	93	91.176	Microcebus_murinus
ENSTRUG00000003691	srsf1a	98	84.362	ENSMOCG00000001996	Srsf1	78	91.192	Microtus_ochrogaster
ENSTRUG00000003691	srsf1a	100	92.245	ENSMMOG00000014354	srsf1a	100	92.245	Mola_mola
ENSTRUG00000003691	srsf1a	73	90.055	ENSMODG00000014781	-	62	90.608	Monodelphis_domestica
ENSTRUG00000003691	srsf1a	79	98.446	ENSMALG00000017129	-	76	98.446	Monopterus_albus
ENSTRUG00000003691	srsf1a	81	77.778	ENSMALG00000007763	-	77	81.675	Monopterus_albus
ENSTRUG00000003691	srsf1a	98	84.362	MGP_CAROLIEiJ_G0016943	Srsf1	90	91.160	Mus_caroli
ENSTRUG00000003691	srsf1a	98	84.362	ENSMUSG00000018379	Srsf1	90	91.160	Mus_musculus
ENSTRUG00000003691	srsf1a	98	84.362	MGP_PahariEiJ_G0018074	Srsf1	74	96.154	Mus_pahari
ENSTRUG00000003691	srsf1a	98	84.362	MGP_SPRETEiJ_G0017790	Srsf1	90	91.160	Mus_spretus
ENSTRUG00000003691	srsf1a	78	89.119	ENSMPUG00000015369	SRSF1	78	91.192	Mustela_putorius_furo
ENSTRUG00000003691	srsf1a	80	86.802	ENSMLUG00000023995	-	77	86.387	Myotis_lucifugus
ENSTRUG00000003691	srsf1a	78	89.119	ENSMLUG00000011040	SRSF1	78	91.192	Myotis_lucifugus
ENSTRUG00000003691	srsf1a	78	89.119	ENSNGAG00000011395	Srsf1	78	91.192	Nannospalax_galili
ENSTRUG00000003691	srsf1a	99	74.180	ENSNBRG00000008041	srsf1b	78	76.963	Neolamprologus_brichardi
ENSTRUG00000003691	srsf1a	98	84.362	ENSNLEG00000008088	-	93	91.176	Nomascus_leucogenys
ENSTRUG00000003691	srsf1a	53	87.121	ENSOPRG00000001234	-	72	90.152	Ochotona_princeps
ENSTRUG00000003691	srsf1a	98	84.362	ENSODEG00000011481	-	78	91.192	Octodon_degus
ENSTRUG00000003691	srsf1a	100	98.776	ENSONIG00000013160	-	99	98.776	Oreochromis_niloticus
ENSTRUG00000003691	srsf1a	79	90.769	ENSONIG00000004860	-	79	90.104	Oreochromis_niloticus
ENSTRUG00000003691	srsf1a	99	63.821	ENSOCUG00000010894	-	75	72.487	Oryctolagus_cuniculus
ENSTRUG00000003691	srsf1a	100	99.184	ENSORLG00000004580	srsf1a	100	99.184	Oryzias_latipes
ENSTRUG00000003691	srsf1a	100	99.184	ENSORLG00020009456	srsf1a	100	99.184	Oryzias_latipes_hni
ENSTRUG00000003691	srsf1a	100	98.776	ENSORLG00015014384	srsf1a	100	98.776	Oryzias_latipes_hsok
ENSTRUG00000003691	srsf1a	92	97.345	ENSOMEG00000004106	srsf1a	93	97.345	Oryzias_melastigma
ENSTRUG00000003691	srsf1a	82	89.706	ENSOGAG00000025950	-	78	91.192	Otolemur_garnettii
ENSTRUG00000003691	srsf1a	78	87.958	ENSOARG00000008323	SRSF1	77	87.958	Ovis_aries
ENSTRUG00000003691	srsf1a	98	84.362	ENSPPAG00000043403	-	93	91.176	Pan_paniscus
ENSTRUG00000003691	srsf1a	98	84.362	ENSPPRG00000004238	-	90	91.160	Panthera_pardus
ENSTRUG00000003691	srsf1a	98	84.362	ENSPTRG00000049077	SRSF1	93	91.176	Pan_troglodytes
ENSTRUG00000003691	srsf1a	98	84.362	ENSPANG00000022305	-	93	91.176	Papio_anubis
ENSTRUG00000003691	srsf1a	99	66.939	ENSPANG00000030275	-	75	67.010	Papio_anubis
ENSTRUG00000003691	srsf1a	78	90.625	ENSPKIG00000007204	srsf1a	83	90.625	Paramormyrops_kingsleyae
ENSTRUG00000003691	srsf1a	78	88.542	ENSPKIG00000012857	srsf1b	78	91.667	Paramormyrops_kingsleyae
ENSTRUG00000003691	srsf1a	78	81.865	ENSPSIG00000009000	-	72	90.226	Pelodiscus_sinensis
ENSTRUG00000003691	srsf1a	96	82.203	ENSPMGG00000005467	-	79	87.047	Periophthalmus_magnuspinnatus
ENSTRUG00000003691	srsf1a	100	96.429	ENSPMGG00000013112	-	100	96.429	Periophthalmus_magnuspinnatus
ENSTRUG00000003691	srsf1a	98	84.362	ENSPEMG00000021416	Srsf1	78	91.192	Peromyscus_maniculatus_bairdii
ENSTRUG00000003691	srsf1a	78	89.175	ENSPCIG00000006076	-	78	91.237	Phascolarctos_cinereus
ENSTRUG00000003691	srsf1a	79	86.294	ENSPFOG00000018325	-	69	86.528	Poecilia_formosa
ENSTRUG00000003691	srsf1a	79	86.294	ENSPLAG00000008416	srsf1b	78	86.528	Poecilia_latipinna
ENSTRUG00000003691	srsf1a	50	98.374	ENSPMEG00000020607	-	99	98.374	Poecilia_mexicana
ENSTRUG00000003691	srsf1a	50	98.374	ENSPMEG00000014312	-	99	98.374	Poecilia_mexicana
ENSTRUG00000003691	srsf1a	79	86.294	ENSPMEG00000002388	-	78	86.528	Poecilia_mexicana
ENSTRUG00000003691	srsf1a	100	98.776	ENSPREG00000009667	srsf1a	100	98.776	Poecilia_reticulata
ENSTRUG00000003691	srsf1a	98	84.362	ENSPPYG00000008240	SRSF1	78	91.192	Pongo_abelii
ENSTRUG00000003691	srsf1a	78	89.119	ENSPCAG00000005199	SRSF1	78	91.192	Procavia_capensis
ENSTRUG00000003691	srsf1a	98	84.362	ENSPCOG00000023654	-	93	91.176	Propithecus_coquereli
ENSTRUG00000003691	srsf1a	79	71.717	ENSPCOG00000025736	-	93	72.251	Propithecus_coquereli
ENSTRUG00000003691	srsf1a	53	95.714	ENSPVAG00000000519	-	53	95.714	Pteropus_vampyrus
ENSTRUG00000003691	srsf1a	95	83.621	ENSPNAG00000022241	srsf1a	78	90.576	Pygocentrus_nattereri
ENSTRUG00000003691	srsf1a	78	91.099	ENSPNAG00000014601	srsf1b	78	91.099	Pygocentrus_nattereri
ENSTRUG00000003691	srsf1a	78	89.119	ENSRNOG00000050323	Srsf1	78	91.192	Rattus_norvegicus
ENSTRUG00000003691	srsf1a	98	84.362	ENSRBIG00000034445	-	93	91.176	Rhinopithecus_bieti
ENSTRUG00000003691	srsf1a	98	84.362	ENSRROG00000041506	-	93	91.176	Rhinopithecus_roxellana
ENSTRUG00000003691	srsf1a	98	84.362	ENSSBOG00000025377	-	93	91.176	Saimiri_boliviensis_boliviensis
ENSTRUG00000003691	srsf1a	78	89.175	ENSSHAG00000002552	-	78	91.237	Sarcophilus_harrisii
ENSTRUG00000003691	srsf1a	78	91.623	ENSSFOG00015004800	srsf1a	77	91.623	Scleropages_formosus
ENSTRUG00000003691	srsf1a	100	97.551	ENSSMAG00000007018	-	100	97.551	Scophthalmus_maximus
ENSTRUG00000003691	srsf1a	78	84.000	ENSSMAG00000009719	-	78	84.000	Scophthalmus_maximus
ENSTRUG00000003691	srsf1a	100	98.776	ENSSDUG00000011303	-	100	98.776	Seriola_dumerili
ENSTRUG00000003691	srsf1a	99	71.774	ENSSDUG00000003929	-	83	79.293	Seriola_dumerili
ENSTRUG00000003691	srsf1a	78	78.646	ENSSLDG00000016868	-	76	78.125	Seriola_lalandi_dorsalis
ENSTRUG00000003691	srsf1a	74	80.978	ENSSLDG00000016895	-	77	83.696	Seriola_lalandi_dorsalis
ENSTRUG00000003691	srsf1a	100	98.776	ENSSLDG00000010543	-	100	98.776	Seriola_lalandi_dorsalis
ENSTRUG00000003691	srsf1a	73	90.556	ENSSARG00000010949	-	62	91.667	Sorex_araneus
ENSTRUG00000003691	srsf1a	98	84.362	ENSSPUG00000000804	-	91	91.160	Sphenodon_punctatus
ENSTRUG00000003691	srsf1a	100	98.780	ENSSPAG00000022562	-	100	98.780	Stegastes_partitus
ENSTRUG00000003691	srsf1a	78	83.981	ENSSPAG00000014152	-	80	83.981	Stegastes_partitus
ENSTRUG00000003691	srsf1a	98	84.362	ENSSSCG00000017626	-	78	91.192	Sus_scrofa
ENSTRUG00000003691	srsf1a	53	87.218	ENSTGUG00000008416	-	72	90.226	Taeniopygia_guttata
ENSTRUG00000003691	srsf1a	100	100.000	ENSTNIG00000016223	srsf1a	99	100.000	Tetraodon_nigroviridis
ENSTRUG00000003691	srsf1a	73	87.778	ENSTBEG00000015378	-	62	90.556	Tupaia_belangeri
ENSTRUG00000003691	srsf1a	53	87.121	ENSTTRG00000007310	SRSF1	72	90.152	Tursiops_truncatus
ENSTRUG00000003691	srsf1a	78	89.119	ENSUAMG00000009858	SRSF1	78	91.192	Ursus_americanus
ENSTRUG00000003691	srsf1a	98	84.362	ENSUMAG00000000455	-	76	91.192	Ursus_maritimus
ENSTRUG00000003691	srsf1a	78	88.601	ENSVPAG00000010094	SRSF1	78	90.674	Vicugna_pacos
ENSTRUG00000003691	srsf1a	98	84.362	ENSVVUG00000011882	-	76	91.192	Vulpes_vulpes
ENSTRUG00000003691	srsf1a	78	91.099	ENSXETG00000008954	srsf1	79	83.491	Xenopus_tropicalis
ENSTRUG00000003691	srsf1a	100	98.776	ENSXMAG00000011766	srsf1a	100	98.776	Xiphophorus_maculatus