EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000003742 (Gene tree)
Gene ID: 101067947
Gene Symbol: cpsf2
Alias: zgc:92484
Full Name: cleavage and polyadenylation specific factor 2
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 5593 bases
Position: chr16:7937013-7942605
Accession: 101067947
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000008788	Beta-Casp	PF10996.8	1.6e-19	1	1
ENSTRUP00000052925	Beta-Casp	PF10996.8	1.7e-19	1	1
ENSTRUP00000052925	Lactamase_B	PF00753.27	3.4e-05	1	1
ENSTRUP00000008788	RMMBL	PF07521.12	1.2e-14	1	1
ENSTRUP00000052925	RMMBL	PF07521.12	1.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000055898	-	3331	XM_003971784	ENSTRUP00000052925	787 (aa)	XP_003971833	UPI000001C24C
ENSTRUT00000008839	-	2214	-	ENSTRUP00000008788	737 (aa)	-	H2S8R2

Gene Model

Click here to download ENSTRUG00000003742's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000003742's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000003742	cpsf2	100	84.918	ENSG00000165934	CPSF2	100	87.500	Homo_sapiens
ENSTRUG00000003742	cpsf2	100	94.155	ENSAPOG00000001242	cpsf2	100	94.155	Acanthochromis_polyacanthus
ENSTRUG00000003742	cpsf2	100	93.274	ENSACIG00000009331	cpsf2	100	93.274	Amphilophus_citrinellus
ENSTRUG00000003742	cpsf2	100	94.282	ENSAOCG00000014095	cpsf2	100	94.282	Amphiprion_ocellaris
ENSTRUG00000003742	cpsf2	100	94.282	ENSAPEG00000009158	cpsf2	100	94.282	Amphiprion_percula
ENSTRUG00000003742	cpsf2	96	93.140	ENSATEG00000017644	cpsf2	99	91.443	Anabas_testudineus
ENSTRUG00000003742	cpsf2	100	84.810	ENSAPLG00000006330	CPSF2	100	84.810	Anas_platyrhynchos
ENSTRUG00000003742	cpsf2	100	84.157	ENSACAG00000009245	CPSF2	100	84.157	Anolis_carolinensis
ENSTRUG00000003742	cpsf2	100	84.918	ENSANAG00000022915	CPSF2	100	84.918	Aotus_nancymaae
ENSTRUG00000003742	cpsf2	100	88.973	ENSAMXG00000018696	cpsf2	100	88.973	Astyanax_mexicanus
ENSTRUG00000003742	cpsf2	100	84.664	ENSBTAG00000010227	CPSF2	100	84.664	Bos_taurus
ENSTRUG00000003742	cpsf2	100	41.183	WBGene00017313	cpsf-2	100	41.735	Caenorhabditis_elegans
ENSTRUG00000003742	cpsf2	100	84.918	ENSCJAG00000018069	CPSF2	100	84.918	Callithrix_jacchus
ENSTRUG00000003742	cpsf2	100	84.664	ENSCAFG00000010909	CPSF2	100	84.664	Canis_familiaris
ENSTRUG00000003742	cpsf2	100	84.664	ENSCAFG00020020670	CPSF2	100	84.664	Canis_lupus_dingo
ENSTRUG00000003742	cpsf2	100	84.664	ENSCHIG00000023848	CPSF2	100	84.664	Capra_hircus
ENSTRUG00000003742	cpsf2	100	84.537	ENSTSYG00000009036	CPSF2	100	84.537	Carlito_syrichta
ENSTRUG00000003742	cpsf2	100	84.664	ENSCPOG00000010899	CPSF2	100	84.664	Cavia_porcellus
ENSTRUG00000003742	cpsf2	100	84.918	ENSCCAG00000028088	CPSF2	100	84.918	Cebus_capucinus
ENSTRUG00000003742	cpsf2	100	84.791	ENSCATG00000030132	CPSF2	100	84.791	Cercocebus_atys
ENSTRUG00000003742	cpsf2	100	84.664	ENSCLAG00000012404	CPSF2	100	84.664	Chinchilla_lanigera
ENSTRUG00000003742	cpsf2	100	84.791	ENSCSAG00000011300	CPSF2	100	84.791	Chlorocebus_sabaeus
ENSTRUG00000003742	cpsf2	100	79.214	ENSCHOG00000012904	CPSF2	100	79.214	Choloepus_hoffmanni
ENSTRUG00000003742	cpsf2	100	84.791	ENSCPBG00000008766	CPSF2	97	84.791	Chrysemys_picta_bellii
ENSTRUG00000003742	cpsf2	100	53.856	ENSCING00000007881	-	100	53.856	Ciona_intestinalis
ENSTRUG00000003742	cpsf2	94	84.730	ENSCANG00000041651	CPSF2	100	84.709	Colobus_angolensis_palliatus
ENSTRUG00000003742	cpsf2	100	84.284	ENSCGRG00001006901	Cpsf2	100	84.284	Cricetulus_griseus_chok1gshd
ENSTRUG00000003742	cpsf2	100	84.284	ENSCGRG00000012416	Cpsf2	100	84.284	Cricetulus_griseus_crigri
ENSTRUG00000003742	cpsf2	100	92.259	ENSCSEG00000004116	cpsf2	100	92.259	Cynoglossus_semilaevis
ENSTRUG00000003742	cpsf2	100	92.503	ENSCVAG00000000095	cpsf2	100	92.503	Cyprinodon_variegatus
ENSTRUG00000003742	cpsf2	100	88.101	ENSDARG00000028971	cpsf2	100	88.101	Danio_rerio
ENSTRUG00000003742	cpsf2	100	84.664	ENSDNOG00000042757	CPSF2	100	84.664	Dasypus_novemcinctus
ENSTRUG00000003742	cpsf2	100	84.411	ENSDORG00000013709	Cpsf2	100	84.411	Dipodomys_ordii
ENSTRUG00000003742	cpsf2	100	54.151	FBgn0027873	Cpsf100	100	53.656	Drosophila_melanogaster
ENSTRUG00000003742	cpsf2	100	77.342	ENSETEG00000012123	CPSF2	100	77.342	Echinops_telfairi
ENSTRUG00000003742	cpsf2	55	76.284	ENSEBUG00000012098	cpsf2	93	76.284	Eptatretus_burgeri
ENSTRUG00000003742	cpsf2	89	90.444	ENSEASG00005021193	CPSF2	100	90.444	Equus_asinus_asinus
ENSTRUG00000003742	cpsf2	100	84.537	ENSECAG00000023935	CPSF2	100	84.537	Equus_caballus
ENSTRUG00000003742	cpsf2	100	88.693	ENSELUG00000008442	cpsf2	100	88.693	Esox_lucius
ENSTRUG00000003742	cpsf2	100	84.537	ENSFCAG00000007886	CPSF2	100	84.537	Felis_catus
ENSTRUG00000003742	cpsf2	100	84.557	ENSFALG00000002412	CPSF2	100	84.557	Ficedula_albicollis
ENSTRUG00000003742	cpsf2	100	84.537	ENSFDAG00000006327	CPSF2	100	84.537	Fukomys_damarensis
ENSTRUG00000003742	cpsf2	96	90.314	ENSFHEG00000015465	cpsf2	98	91.088	Fundulus_heteroclitus
ENSTRUG00000003742	cpsf2	100	88.496	ENSGMOG00000008761	cpsf2	100	88.496	Gadus_morhua
ENSTRUG00000003742	cpsf2	100	85.152	ENSGALG00000010783	CPSF2	100	85.660	Gallus_gallus
ENSTRUG00000003742	cpsf2	100	92.757	ENSGAFG00000001407	cpsf2	100	92.757	Gambusia_affinis
ENSTRUG00000003742	cpsf2	100	94.155	ENSGACG00000008418	cpsf2	100	94.155	Gasterosteus_aculeatus
ENSTRUG00000003742	cpsf2	100	84.664	ENSGAGG00000008287	CPSF2	100	84.450	Gopherus_agassizii
ENSTRUG00000003742	cpsf2	100	84.918	ENSGGOG00000011799	CPSF2	100	84.918	Gorilla_gorilla
ENSTRUG00000003742	cpsf2	100	92.249	ENSHBUG00000023466	cpsf2	100	92.249	Haplochromis_burtoni
ENSTRUG00000003742	cpsf2	100	84.664	ENSHGLG00000018311	CPSF2	100	84.664	Heterocephalus_glaber_female
ENSTRUG00000003742	cpsf2	100	84.664	ENSHGLG00100016460	CPSF2	100	84.664	Heterocephalus_glaber_male
ENSTRUG00000003742	cpsf2	100	91.995	ENSHCOG00000019527	cpsf2	98	91.995	Hippocampus_comes
ENSTRUG00000003742	cpsf2	100	89.734	ENSIPUG00000020857	cpsf2	100	89.734	Ictalurus_punctatus
ENSTRUG00000003742	cpsf2	100	84.791	ENSSTOG00000009528	CPSF2	100	84.791	Ictidomys_tridecemlineatus
ENSTRUG00000003742	cpsf2	100	84.537	ENSJJAG00000017925	Cpsf2	100	84.537	Jaculus_jaculus
ENSTRUG00000003742	cpsf2	100	92.630	ENSKMAG00000019429	cpsf2	100	92.630	Kryptolebias_marmoratus
ENSTRUG00000003742	cpsf2	100	89.069	ENSLBEG00000011585	cpsf2	100	92.895	Labrus_bergylta
ENSTRUG00000003742	cpsf2	100	82.868	ENSLACG00000019024	CPSF2	100	83.270	Latimeria_chalumnae
ENSTRUG00000003742	cpsf2	100	88.875	ENSLOCG00000014102	cpsf2	100	88.875	Lepisosteus_oculatus
ENSTRUG00000003742	cpsf2	100	84.576	ENSLAFG00000004891	CPSF2	100	84.576	Loxodonta_africana
ENSTRUG00000003742	cpsf2	100	84.791	ENSMFAG00000041212	CPSF2	100	84.791	Macaca_fascicularis
ENSTRUG00000003742	cpsf2	100	84.791	ENSMMUG00000000699	CPSF2	100	84.791	Macaca_mulatta
ENSTRUG00000003742	cpsf2	100	84.791	ENSMNEG00000031584	CPSF2	100	84.791	Macaca_nemestrina
ENSTRUG00000003742	cpsf2	100	84.791	ENSMLEG00000029394	CPSF2	100	84.791	Mandrillus_leucophaeus
ENSTRUG00000003742	cpsf2	100	94.155	ENSMAMG00000004235	cpsf2	100	94.155	Mastacembelus_armatus
ENSTRUG00000003742	cpsf2	100	92.376	ENSMZEG00005001769	cpsf2	100	92.376	Maylandia_zebra
ENSTRUG00000003742	cpsf2	100	84.918	ENSMGAG00000013122	CPSF2	100	85.425	Meleagris_gallopavo
ENSTRUG00000003742	cpsf2	100	84.157	ENSMAUG00000015160	Cpsf2	100	84.157	Mesocricetus_auratus
ENSTRUG00000003742	cpsf2	100	84.791	ENSMICG00000016441	CPSF2	100	84.791	Microcebus_murinus
ENSTRUG00000003742	cpsf2	100	84.284	ENSMOCG00000015372	Cpsf2	100	84.284	Microtus_ochrogaster
ENSTRUG00000003742	cpsf2	100	89.454	ENSMMOG00000015590	cpsf2	100	89.454	Mola_mola
ENSTRUG00000003742	cpsf2	100	84.791	ENSMODG00000002042	CPSF2	100	84.791	Monodelphis_domestica
ENSTRUG00000003742	cpsf2	100	89.581	ENSMALG00000022275	cpsf2	100	89.581	Monopterus_albus
ENSTRUG00000003742	cpsf2	100	84.284	ENSMUSG00000041781	Cpsf2	100	84.284	Mus_musculus
ENSTRUG00000003742	cpsf2	100	84.411	MGP_PahariEiJ_G0029791	Cpsf2	100	84.411	Mus_pahari
ENSTRUG00000003742	cpsf2	100	84.284	MGP_SPRETEiJ_G0018877	Cpsf2	100	84.284	Mus_spretus
ENSTRUG00000003742	cpsf2	100	84.664	ENSMPUG00000007617	CPSF2	98	84.664	Mustela_putorius_furo
ENSTRUG00000003742	cpsf2	100	84.537	ENSMLUG00000005570	CPSF2	100	84.537	Myotis_lucifugus
ENSTRUG00000003742	cpsf2	100	84.537	ENSNGAG00000020312	Cpsf2	100	84.537	Nannospalax_galili
ENSTRUG00000003742	cpsf2	100	92.757	ENSNBRG00000022402	cpsf2	100	92.757	Neolamprologus_brichardi
ENSTRUG00000003742	cpsf2	100	84.157	ENSNLEG00000017132	CPSF2	100	84.157	Nomascus_leucogenys
ENSTRUG00000003742	cpsf2	91	93.204	ENSMEUG00000008138	CPSF2	91	93.204	Notamacropus_eugenii
ENSTRUG00000003742	cpsf2	94	80.623	ENSOPRG00000008484	-	100	80.623	Ochotona_princeps
ENSTRUG00000003742	cpsf2	100	84.411	ENSODEG00000008682	CPSF2	100	84.411	Octodon_degus
ENSTRUG00000003742	cpsf2	100	92.884	ENSONIG00000005901	cpsf2	100	92.884	Oreochromis_niloticus
ENSTRUG00000003742	cpsf2	100	85.063	ENSOANG00000003822	CPSF2	100	85.063	Ornithorhynchus_anatinus
ENSTRUG00000003742	cpsf2	100	84.537	ENSOCUG00000005713	CPSF2	100	84.537	Oryctolagus_cuniculus
ENSTRUG00000003742	cpsf2	100	90.823	ENSORLG00000011628	cpsf2	100	90.823	Oryzias_latipes
ENSTRUG00000003742	cpsf2	100	93.139	ENSORLG00020016980	cpsf2	100	93.139	Oryzias_latipes_hni
ENSTRUG00000003742	cpsf2	100	93.139	ENSORLG00015011910	cpsf2	100	93.139	Oryzias_latipes_hsok
ENSTRUG00000003742	cpsf2	100	92.893	ENSOMEG00000022876	cpsf2	100	92.893	Oryzias_melastigma
ENSTRUG00000003742	cpsf2	100	81.669	ENSOARG00000012889	CPSF2	100	81.669	Ovis_aries
ENSTRUG00000003742	cpsf2	100	84.918	ENSPPAG00000039666	CPSF2	100	84.918	Pan_paniscus
ENSTRUG00000003742	cpsf2	99	84.518	ENSPPRG00000010869	CPSF2	100	84.518	Panthera_pardus
ENSTRUG00000003742	cpsf2	100	84.537	ENSPTIG00000021202	CPSF2	100	84.537	Panthera_tigris_altaica
ENSTRUG00000003742	cpsf2	100	84.918	ENSPTRG00000006651	CPSF2	100	84.918	Pan_troglodytes
ENSTRUG00000003742	cpsf2	100	84.791	ENSPANG00000017417	CPSF2	100	84.791	Papio_anubis
ENSTRUG00000003742	cpsf2	100	87.349	ENSPKIG00000021453	cpsf2	100	87.349	Paramormyrops_kingsleyae
ENSTRUG00000003742	cpsf2	100	84.157	ENSPSIG00000006289	CPSF2	100	84.157	Pelodiscus_sinensis
ENSTRUG00000003742	cpsf2	81	86.522	ENSPMGG00000002511	cpsf2	99	87.500	Periophthalmus_magnuspinnatus
ENSTRUG00000003742	cpsf2	100	84.411	ENSPEMG00000007917	Cpsf2	100	84.411	Peromyscus_maniculatus_bairdii
ENSTRUG00000003742	cpsf2	100	72.647	ENSPMAG00000006205	cpsf2	100	72.444	Petromyzon_marinus
ENSTRUG00000003742	cpsf2	100	84.791	ENSPCIG00000011393	CPSF2	100	84.791	Phascolarctos_cinereus
ENSTRUG00000003742	cpsf2	100	92.503	ENSPFOG00000018648	cpsf2	100	92.503	Poecilia_formosa
ENSTRUG00000003742	cpsf2	100	92.503	ENSPLAG00000019199	cpsf2	99	92.503	Poecilia_latipinna
ENSTRUG00000003742	cpsf2	96	92.602	ENSPMEG00000012100	cpsf2	100	92.091	Poecilia_mexicana
ENSTRUG00000003742	cpsf2	100	92.630	ENSPREG00000008960	cpsf2	100	92.630	Poecilia_reticulata
ENSTRUG00000003742	cpsf2	68	80.517	ENSPPYG00000029685	-	100	80.517	Pongo_abelii
ENSTRUG00000003742	cpsf2	100	84.791	ENSPCAG00000012477	CPSF2	100	84.791	Procavia_capensis
ENSTRUG00000003742	cpsf2	100	84.664	ENSPCOG00000026387	CPSF2	100	84.664	Propithecus_coquereli
ENSTRUG00000003742	cpsf2	64	90.816	ENSPVAG00000004223	CPSF2	65	90.816	Pteropus_vampyrus
ENSTRUG00000003742	cpsf2	100	92.386	ENSPNYG00000023356	cpsf2	100	92.386	Pundamilia_nyererei
ENSTRUG00000003742	cpsf2	100	90.368	ENSPNAG00000001849	cpsf2	100	90.368	Pygocentrus_nattereri
ENSTRUG00000003742	cpsf2	100	84.157	ENSRNOG00000005733	Cpsf2	100	84.157	Rattus_norvegicus
ENSTRUG00000003742	cpsf2	100	84.791	ENSRBIG00000044792	CPSF2	100	84.791	Rhinopithecus_bieti
ENSTRUG00000003742	cpsf2	100	84.791	ENSRROG00000034875	CPSF2	100	84.791	Rhinopithecus_roxellana
ENSTRUG00000003742	cpsf2	100	84.918	ENSSBOG00000024571	CPSF2	100	84.918	Saimiri_boliviensis_boliviensis
ENSTRUG00000003742	cpsf2	100	84.791	ENSSHAG00000010458	CPSF2	100	84.791	Sarcophilus_harrisii
ENSTRUG00000003742	cpsf2	100	91.001	ENSSFOG00015002117	cpsf2	100	91.001	Scleropages_formosus
ENSTRUG00000003742	cpsf2	100	92.259	ENSSMAG00000002001	cpsf2	100	92.893	Scophthalmus_maximus
ENSTRUG00000003742	cpsf2	100	94.536	ENSSDUG00000004084	cpsf2	100	94.536	Seriola_dumerili
ENSTRUG00000003742	cpsf2	100	94.536	ENSSLDG00000024330	cpsf2	100	94.536	Seriola_lalandi_dorsalis
ENSTRUG00000003742	cpsf2	58	95.556	ENSSARG00000009784	-	63	95.556	Sorex_araneus
ENSTRUG00000003742	cpsf2	100	84.791	ENSSPUG00000013485	CPSF2	100	84.576	Sphenodon_punctatus
ENSTRUG00000003742	cpsf2	100	94.028	ENSSPAG00000013284	cpsf2	100	94.028	Stegastes_partitus
ENSTRUG00000003742	cpsf2	100	84.411	ENSSSCG00000002447	CPSF2	100	84.411	Sus_scrofa
ENSTRUG00000003742	cpsf2	100	84.684	ENSTGUG00000012571	-	100	84.684	Taeniopygia_guttata
ENSTRUG00000003742	cpsf2	100	97.592	ENSTNIG00000012228	cpsf2	100	97.592	Tetraodon_nigroviridis
ENSTRUG00000003742	cpsf2	91	82.609	ENSTBEG00000004530	CPSF2	94	82.609	Tupaia_belangeri
ENSTRUG00000003742	cpsf2	94	87.500	ENSTTRG00000008697	CPSF2	88	87.500	Tursiops_truncatus
ENSTRUG00000003742	cpsf2	100	84.664	ENSUAMG00000028071	CPSF2	100	84.664	Ursus_americanus
ENSTRUG00000003742	cpsf2	100	84.664	ENSUMAG00000005029	CPSF2	100	84.664	Ursus_maritimus
ENSTRUG00000003742	cpsf2	99	84.518	ENSVPAG00000003503	CPSF2	100	84.518	Vicugna_pacos
ENSTRUG00000003742	cpsf2	100	84.664	ENSVVUG00000024642	CPSF2	100	84.664	Vulpes_vulpes
ENSTRUG00000003742	cpsf2	100	84.030	ENSXETG00000010289	cpsf2	100	84.030	Xenopus_tropicalis
ENSTRUG00000003742	cpsf2	100	92.630	ENSXCOG00000001764	cpsf2	100	92.630	Xiphophorus_couchianus
ENSTRUG00000003742	cpsf2	100	92.757	ENSXMAG00000017048	cpsf2	100	92.757	Xiphophorus_maculatus