EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSTRUG00000003767 (Gene tree)
Gene ID
101071215
Gene Symbol
-
Alias
-
Full Name
polyadenylate-binding protein 1-like
Gene Type
protein_coding
Species
Takifugu_rubripes
Status
putative
Strand
Minus strand
Length
7585 bases
Position
chr12:2761558-2769142
Accession
101071215
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSTRUP00000008848PABPPF00658.182.9e-2911
ENSTRUP00000053332PABPPF00658.183e-2911
ENSTRUP00000008848RRM_5PF13893.64.1e-0912
ENSTRUP00000008848RRM_5PF13893.64.1e-0922
ENSTRUP00000053332RRM_5PF13893.64.5e-0912
ENSTRUP00000053332RRM_5PF13893.64.5e-0922
ENSTRUP00000008848RRM_1PF00076.223.2e-8914
ENSTRUP00000008848RRM_1PF00076.223.2e-8924
ENSTRUP00000008848RRM_1PF00076.223.2e-8934
ENSTRUP00000008848RRM_1PF00076.223.2e-8944
ENSTRUP00000053332RRM_1PF00076.223.6e-8914
ENSTRUP00000053332RRM_1PF00076.223.6e-8924
ENSTRUP00000053332RRM_1PF00076.223.6e-8934
ENSTRUP00000053332RRM_1PF00076.223.6e-8944
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSTRUT00000058572-4379XM_003968912ENSTRUP00000053332635 (aa)XP_003968961UPI00029906E6
ENSTRUT00000008899-1866-ENSTRUP00000008848621 (aa)-H2S8X2
Gene Model
Click here to download ENSTRUG00000003767's gene model file
Pathways
Pathway IDPathway NameSource
tru03013RNA transportKEGG
tru03015mRNA surveillance pathwayKEGG
tru03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000003767's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSTRUG00000003767-9568.226ENSTRUG00000011085pabpc1l9768.387
ENSTRUG00000003767-5634.091ENSTRUG00000010147-6034.091
ENSTRUG00000003767-10085.759ENSTRUG00000011577-10085.759
ENSTRUG00000003767-5938.554ENSTRUG00000017937celf5a6138.554
ENSTRUG00000003767-7031.325ENSTRUG00000015136-8731.325
ENSTRUG00000003767-9975.078ENSTRUG00000005907pabpc49975.748
ENSTRUG00000003767-5740.278ENSTRUG00000021378-6440.278
ENSTRUG00000003767-6036.145ENSTRUG00000000523elavl48736.145
ENSTRUG00000003767-5636.047ENSTRUG00000016905-5436.047
ENSTRUG00000003767-6133.929ENSTRUG00000007296-8833.929
ENSTRUG00000003767-6138.356ENSTRUG00000014225celf3b6938.356
ENSTRUG00000003767-6037.333ENSTRUG00000016032rbm196937.333
ENSTRUG00000003767-6031.447ENSTRUG00000003352trnau1apa6431.447
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSTRUG00000003767-5980.102ENSG00000184388PABPC1L2B9880.102Homo_sapiens
ENSTRUG00000003767-5980.102ENSG00000186288PABPC1L2A9880.102Homo_sapiens
ENSTRUG00000003767-10091.969ENSAPOG00000017776pabpc1b10091.969Acanthochromis_polyacanthus
ENSTRUG00000003767-10086.854ENSAPOG00000015105pabpc1a10086.385Acanthochromis_polyacanthus
ENSTRUG00000003767-5980.102ENSAMEG00000019441-9880.102Ailuropoda_melanoleuca
ENSTRUG00000003767-10085.824ENSACIG00000018366pabpc1b10085.670Amphilophus_citrinellus
ENSTRUG00000003767-10086.228ENSACIG00000004685pabpc1a10086.228Amphilophus_citrinellus
ENSTRUG00000003767-10086.385ENSAOCG00000011656pabpc1a10086.385Amphiprion_ocellaris
ENSTRUG00000003767-10091.339ENSAOCG00000019839pabpc1b10091.339Amphiprion_ocellaris
ENSTRUG00000003767-10086.385ENSAPEG00000006963pabpc1a10086.385Amphiprion_percula
ENSTRUG00000003767-10091.339ENSAPEG00000010435pabpc1b10091.339Amphiprion_percula
ENSTRUG00000003767-10091.209ENSATEG00000012917pabpc1b10091.209Anabas_testudineus
ENSTRUG00000003767-10086.541ENSATEG00000024852pabpc1a10086.228Anabas_testudineus
ENSTRUG00000003767-5980.102ENSANAG00000019429-9880.102Aotus_nancymaae
ENSTRUG00000003767-5980.102ENSANAG00000019431-9880.102Aotus_nancymaae
ENSTRUG00000003767-10091.024ENSACLG00000014335pabpc1b10090.866Astatotilapia_calliptera
ENSTRUG00000003767-9990.951ENSACLG00000009399pabpc1a10092.806Astatotilapia_calliptera
ENSTRUG00000003767-10090.079ENSAMXG00000008599pabpc1b10090.079Astyanax_mexicanus
ENSTRUG00000003767-6078.537ENSBTAG00000050902-9878.537Bos_taurus
ENSTRUG00000003767-6176.555ENSBTAG00000052491-9876.555Bos_taurus
ENSTRUG00000003767-5980.102ENSCJAG00000041326-9880.102Callithrix_jacchus
ENSTRUG00000003767-6178.537ENSCAFG00020002052-9878.537Canis_lupus_dingo
ENSTRUG00000003767-5980.102ENSCHIG00000011138-9880.102Capra_hircus
ENSTRUG00000003767-5980.102ENSCHIG00000006283-9880.102Capra_hircus
ENSTRUG00000003767-5980.102ENSTSYG00000001775-9880.102Carlito_syrichta
ENSTRUG00000003767-5980.102ENSCPOG00000009525-9880.102Cavia_porcellus
ENSTRUG00000003767-5980.102ENSCCAG00000031524-9880.102Cebus_capucinus
ENSTRUG00000003767-5980.102ENSCATG00000043125-9880.102Cercocebus_atys
ENSTRUG00000003767-5980.102ENSCATG00000042826-9880.102Cercocebus_atys
ENSTRUG00000003767-5979.082ENSCLAG00000017409-9879.082Chinchilla_lanigera
ENSTRUG00000003767-5979.082ENSCLAG00000017412-9879.082Chinchilla_lanigera
ENSTRUG00000003767-6080.102ENSCSAG00000000102-9880.102Chlorocebus_sabaeus
ENSTRUG00000003767-5980.110ENSCGRG00001023387-9677.436Cricetulus_griseus_chok1gshd
ENSTRUG00000003767-10088.346ENSCSEG00000015241-10088.189Cynoglossus_semilaevis
ENSTRUG00000003767-9986.299ENSCSEG00000013324pabpc1a10086.299Cynoglossus_semilaevis
ENSTRUG00000003767-10086.385ENSCVAG00000021872pabpc1a10085.915Cyprinodon_variegatus
ENSTRUG00000003767-10089.623ENSCVAG00000005489pabpc1b10089.780Cyprinodon_variegatus
ENSTRUG00000003767-10090.079ENSDARG00000021140pabpc1b9992.908Danio_rerio
ENSTRUG00000003767-10087.264ENSDARG00000017219pabpc1a10087.264Danio_rerio
ENSTRUG00000003767-5980.423ENSDNOG00000030926-9878.571Dasypus_novemcinctus
ENSTRUG00000003767-5978.571ENSDORG00000011362-9878.571Dipodomys_ordii
ENSTRUG00000003767-6178.155ENSEASG00005010399-9878.155Equus_asinus_asinus
ENSTRUG00000003767-6178.155ENSECAG00000002620-9878.155Equus_caballus
ENSTRUG00000003767-6075.510ENSEEUG00000008203-9875.510Erinaceus_europaeus
ENSTRUG00000003767-10087.931ENSELUG00000015062-10087.931Esox_lucius
ENSTRUG00000003767-6158.190ENSELUG00000005389-9758.190Esox_lucius
ENSTRUG00000003767-9987.441ENSELUG00000003614pabpc1a10087.284Esox_lucius
ENSTRUG00000003767-5980.102ENSFCAG00000039701-9880.102Felis_catus
ENSTRUG00000003767-5980.102ENSFDAG00000005484-9880.102Fukomys_damarensis
ENSTRUG00000003767-10086.072ENSFHEG00000018979pabpc1a10086.072Fundulus_heteroclitus
ENSTRUG00000003767-10089.449ENSFHEG00000008186pabpc1b10090.079Fundulus_heteroclitus
ENSTRUG00000003767-9985.471ENSGMOG00000013448pabpc1a9985.471Gadus_morhua
ENSTRUG00000003767-10081.493ENSGMOG00000002448-10081.493Gadus_morhua
ENSTRUG00000003767-10086.228ENSGAFG00000019750pabpc1a10086.228Gambusia_affinis
ENSTRUG00000003767-10090.394ENSGAFG00000010193pabpc1b10090.866Gambusia_affinis
ENSTRUG00000003767-10087.324ENSGACG00000003572pabpc1a10086.698Gasterosteus_aculeatus
ENSTRUG00000003767-10088.491ENSGACG00000003771pabpc1b10088.958Gasterosteus_aculeatus
ENSTRUG00000003767-5980.102ENSGGOG00000043933-9880.102Gorilla_gorilla
ENSTRUG00000003767-5980.102ENSGGOG00000038606-9880.102Gorilla_gorilla
ENSTRUG00000003767-9990.951ENSHBUG00000020487pabpc1a10092.806Haplochromis_burtoni
ENSTRUG00000003767-10091.024ENSHBUG00000002075pabpc1b10090.866Haplochromis_burtoni
ENSTRUG00000003767-5980.102ENSHGLG00000019762-9880.102Heterocephalus_glaber_female
ENSTRUG00000003767-5980.102ENSHGLG00000019668-9880.102Heterocephalus_glaber_female
ENSTRUG00000003767-5980.102ENSHGLG00100020854-9880.102Heterocephalus_glaber_male
ENSTRUG00000003767-9869.381ENSHCOG00000003175pabpc1b9982.143Hippocampus_comes
ENSTRUG00000003767-10085.915ENSHCOG00000013502pabpc1a10085.915Hippocampus_comes
ENSTRUG00000003767-7755.224ENSIPUG00000018724-7855.224Ictalurus_punctatus
ENSTRUG00000003767-10085.327ENSIPUG00000010791-10085.008Ictalurus_punctatus
ENSTRUG00000003767-10085.377ENSIPUG00000008848pabpc1a10085.063Ictalurus_punctatus
ENSTRUG00000003767-7454.280ENSIPUG00000021244-6554.280Ictalurus_punctatus
ENSTRUG00000003767-5980.612ENSSTOG00000022096-9880.612Ictidomys_tridecemlineatus
ENSTRUG00000003767-5980.612ENSSTOG00000026028-9880.612Ictidomys_tridecemlineatus
ENSTRUG00000003767-5979.592ENSJJAG00000007037-9879.592Jaculus_jaculus
ENSTRUG00000003767-10086.385ENSKMAG00000000605pabpc1a10085.915Kryptolebias_marmoratus
ENSTRUG00000003767-10089.134ENSKMAG00000008049pabpc1b10089.606Kryptolebias_marmoratus
ENSTRUG00000003767-10090.551ENSLBEG00000026845pabpc1b10090.551Labrus_bergylta
ENSTRUG00000003767-10087.011ENSLBEG00000024002-10086.541Labrus_bergylta
ENSTRUG00000003767-6079.487ENSLAFG00000023096-9879.487Loxodonta_africana
ENSTRUG00000003767-5979.695ENSMFAG00000028878-9879.695Macaca_fascicularis
ENSTRUG00000003767-5980.102ENSMMUG00000037681-9880.102Macaca_mulatta
ENSTRUG00000003767-5980.102ENSMMUG00000039929-9880.102Macaca_mulatta
ENSTRUG00000003767-5980.102ENSMMUG00000009740-9880.102Macaca_mulatta
ENSTRUG00000003767-5980.102ENSMNEG00000037732-9880.102Macaca_nemestrina
ENSTRUG00000003767-5980.102ENSMLEG00000027495-9880.102Mandrillus_leucophaeus
ENSTRUG00000003767-9990.023ENSMAMG00000004502-10091.847Mastacembelus_armatus
ENSTRUG00000003767-10091.811ENSMAMG00000014610pabpc1b10091.654Mastacembelus_armatus
ENSTRUG00000003767-10091.024ENSMZEG00005026745pabpc1b10090.866Maylandia_zebra
ENSTRUG00000003767-9990.951ENSMZEG00005025416pabpc1a10092.806Maylandia_zebra
ENSTRUG00000003767-5980.102ENSMICG00000047642-9880.102Microcebus_murinus
ENSTRUG00000003767-10087.019ENSMMOG00000018009pabpc1b10086.538Mola_mola
ENSTRUG00000003767-9990.255ENSMMOG00000018044pabpc1a10092.086Mola_mola
ENSTRUG00000003767-9864.650ENSMODG00000015024-9864.490Monodelphis_domestica
ENSTRUG00000003767-9872.019ENSMODG00000013156-9872.178Monodelphis_domestica
ENSTRUG00000003767-10085.354ENSMALG00000006066pabpc1b10085.512Monopterus_albus
ENSTRUG00000003767-10086.072ENSMALG00000013020-10086.072Monopterus_albus
ENSTRUG00000003767-5981.967ENSNGAG00000012688-9879.592Nannospalax_galili
ENSTRUG00000003767-9990.951ENSNBRG00000003068-10092.806Neolamprologus_brichardi
ENSTRUG00000003767-10090.866ENSNBRG00000013737pabpc1b10090.709Neolamprologus_brichardi
ENSTRUG00000003767-5980.102ENSNLEG00000018128-9880.102Nomascus_leucogenys
ENSTRUG00000003767-5979.592ENSODEG00000018540-9879.592Octodon_degus
ENSTRUG00000003767-10086.228ENSONIG00000006871-10086.228Oreochromis_niloticus
ENSTRUG00000003767-10090.709ENSONIG00000002717pabpc1b10090.551Oreochromis_niloticus
ENSTRUG00000003767-5980.102ENSOCUG00000002565-9880.102Oryctolagus_cuniculus
ENSTRUG00000003767-10084.458ENSORLG00000003008-10084.252Oryzias_latipes
ENSTRUG00000003767-9992.162ENSORLG00000002691pabpc1a10092.162Oryzias_latipes
ENSTRUG00000003767-10085.915ENSORLG00020022398pabpc1a10085.915Oryzias_latipes_hni
ENSTRUG00000003767-10084.301ENSORLG00020022259-10084.094Oryzias_latipes_hni
ENSTRUG00000003767-10084.772ENSORLG00015010932-10084.567Oryzias_latipes_hsok
ENSTRUG00000003767-10085.759ENSORLG00015013633pabpc110085.759Oryzias_latipes_hsok
ENSTRUG00000003767-9484.223ENSOMEG00000013627pabpc1b9986.058Oryzias_melastigma
ENSTRUG00000003767-10085.759ENSOMEG00000020219pabpc1a10085.759Oryzias_melastigma
ENSTRUG00000003767-5980.102ENSOGAG00000029513-9880.102Otolemur_garnettii
ENSTRUG00000003767-5980.102ENSOGAG00000026047-9880.102Otolemur_garnettii
ENSTRUG00000003767-5980.102ENSOARG00000005943-9880.102Ovis_aries
ENSTRUG00000003767-5980.102ENSPPAG00000012920-9880.102Pan_paniscus
ENSTRUG00000003767-5980.102ENSPPRG00000011804-9880.102Panthera_pardus
ENSTRUG00000003767-5980.102ENSPPRG00000011809-9880.102Panthera_pardus
ENSTRUG00000003767-5980.102ENSPTRG00000028252-9880.102Pan_troglodytes
ENSTRUG00000003767-5980.102ENSPANG00000011549-9880.102Papio_anubis
ENSTRUG00000003767-10089.606ENSPKIG00000005676pabpc1b10089.606Paramormyrops_kingsleyae
ENSTRUG00000003767-7294.170ENSPMGG00000023134-9794.170Periophthalmus_magnuspinnatus
ENSTRUG00000003767-7687.104ENSPMGG00000022487pabpc1a9291.031Periophthalmus_magnuspinnatus
ENSTRUG00000003767-9968.839ENSPCIG00000016995-5568.471Phascolarctos_cinereus
ENSTRUG00000003767-10084.793ENSPFOG00000010815pabpc1a10084.793Poecilia_formosa
ENSTRUG00000003767-10090.236ENSPFOG00000005917pabpc1b10090.866Poecilia_formosa
ENSTRUG00000003767-10090.551ENSPLAG00000001388pabpc1b10091.181Poecilia_latipinna
ENSTRUG00000003767-10086.228ENSPLAG00000004114pabpc1a10086.228Poecilia_latipinna
ENSTRUG00000003767-10086.228ENSPMEG00000001334pabpc1a10086.228Poecilia_mexicana
ENSTRUG00000003767-10090.236ENSPMEG00000014399pabpc1b10090.866Poecilia_mexicana
ENSTRUG00000003767-9990.487ENSPREG00000019595pabpc1a10092.326Poecilia_reticulata
ENSTRUG00000003767-10090.551ENSPREG00000010911pabpc1b10091.181Poecilia_reticulata
ENSTRUG00000003767-6080.102ENSPPYG00000020468-9880.102Pongo_abelii
ENSTRUG00000003767-6080.102ENSPCAG00000005308-9880.102Procavia_capensis
ENSTRUG00000003767-5980.612ENSPCOG00000026349-9880.612Propithecus_coquereli
ENSTRUG00000003767-6079.487ENSPVAG00000016117-9879.487Pteropus_vampyrus
ENSTRUG00000003767-10086.228ENSPNYG00000005192pabpc1a10086.228Pundamilia_nyererei
ENSTRUG00000003767-10091.024ENSPNYG00000012578pabpc1b10090.866Pundamilia_nyererei
ENSTRUG00000003767-10089.764ENSPNAG00000024626pabpc1b10089.764Pygocentrus_nattereri
ENSTRUG00000003767-10086.006ENSPNAG00000028408pabpc1a10086.006Pygocentrus_nattereri
ENSTRUG00000003767-5980.102ENSRBIG00000027173-9880.102Rhinopithecus_bieti
ENSTRUG00000003767-8889.362ENSRBIG00000028738-9589.362Rhinopithecus_bieti
ENSTRUG00000003767-5980.102ENSRROG00000017404-9880.102Rhinopithecus_roxellana
ENSTRUG00000003767-9862.540ENSSHAG00000000511-10062.540Sarcophilus_harrisii
ENSTRUG00000003767-10087.421ENSSFOG00015006662pabpc1a10087.736Scleropages_formosus
ENSTRUG00000003767-7279.769ENSSFOG00015019668-8879.769Scleropages_formosus
ENSTRUG00000003767-10089.606ENSSFOG00015002752-10089.449Scleropages_formosus
ENSTRUG00000003767-10086.698ENSSMAG00000010803pabpc1a10086.072Scophthalmus_maximus
ENSTRUG00000003767-10090.551ENSSMAG00000006869pabpc1b10090.551Scophthalmus_maximus
ENSTRUG00000003767-10089.134ENSSDUG00000011965pabpc1b10088.976Seriola_dumerili
ENSTRUG00000003767-10086.854ENSSDUG00000006675pabpc1a10086.385Seriola_dumerili
ENSTRUG00000003767-10086.854ENSSLDG00000011661pabpc1a10086.385Seriola_lalandi_dorsalis
ENSTRUG00000003767-10090.781ENSSLDG00000014156pabpc1b10090.625Seriola_lalandi_dorsalis
ENSTRUG00000003767-10091.496ENSSPAG00000019265pabpc1b10091.654Stegastes_partitus
ENSTRUG00000003767-10086.228ENSSPAG00000014453-10086.228Stegastes_partitus
ENSTRUG00000003767-5980.102ENSSSCG00000032167-9880.102Sus_scrofa
ENSTRUG00000003767-5980.102ENSSSCG00000036336-9880.102Sus_scrofa
ENSTRUG00000003767-10083.179ENSTNIG00000013307pabpc1a10083.179Tetraodon_nigroviridis
ENSTRUG00000003767-10097.962ENSTNIG00000009153pabpc1b10097.962Tetraodon_nigroviridis
ENSTRUG00000003767-6080.102ENSTTRG00000013181-9880.102Tursiops_truncatus
ENSTRUG00000003767-5980.102ENSUAMG00000008089-9880.102Ursus_americanus
ENSTRUG00000003767-9652.961ENSUMAG00000023926-8967.500Ursus_maritimus
ENSTRUG00000003767-5980.102ENSUMAG00000003364-9880.102Ursus_maritimus
ENSTRUG00000003767-5979.293ENSVVUG00000015892-9679.293Vulpes_vulpes
ENSTRUG00000003767-9946.102ENSXETG00000015439-10046.102Xenopus_tropicalis
ENSTRUG00000003767-10086.772ENSXCOG00000019901pabpc1b10087.087Xiphophorus_couchianus
ENSTRUG00000003767-10083.780ENSXCOG00000017066pabpc1a10082.992Xiphophorus_couchianus
ENSTRUG00000003767-10086.072ENSXMAG00000002555pabpc1a10086.072Xiphophorus_maculatus
ENSTRUG00000003767-10090.394ENSXMAG00000003753pabpc1b10091.024Xiphophorus_maculatus

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