EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000004413 (Gene tree)
Gene ID: 101073954
Gene Symbol: dkc1
Alias: fc87a02|fi24a05|fv62a07|wu:fa28f10|wu:fc87a02|wu:fi24a05|wu:fv62a07|zgc:110395
Full Name: dyskerin pseudouridine synthase 1
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 7998 bases
Position: chr2:10255858-10263855
Accession: 101073954
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000010489	TruB_N	PF01509.18	9.4e-22	1	1
ENSTRUP00000010488	TruB_N	PF01509.18	3.1e-21	1	1
ENSTRUP00000010488	PUA	PF01472.20	6.9e-17	1	1
ENSTRUP00000010489	PUA	PF01472.20	1.1e-16	1	1
ENSTRUP00000010488	DKCLD	PF08068.12	2.8e-31	1	1
ENSTRUP00000010489	DKCLD	PF08068.12	3e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000010547	-	1506	-	ENSTRUP00000010489	501 (aa)	-	H2SDK8
ENSTRUT00000010546	-	4947	XM_003962808	ENSTRUP00000010488	497 (aa)	XP_003962857	H2SDK7

Gene Model

Click here to download ENSTRUG00000004413's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000004413's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000004413	dkc1	86	80.952	ENSG00000130826	DKC1	99	87.864	Homo_sapiens
ENSTRUG00000004413	dkc1	93	87.261	ENSAPOG00000007799	dkc1	97	85.569	Acanthochromis_polyacanthus
ENSTRUG00000004413	dkc1	85	81.379	ENSAMEG00000002776	DKC1	86	81.379	Ailuropoda_melanoleuca
ENSTRUG00000004413	dkc1	93	84.435	ENSACIG00000022614	dkc1	93	87.852	Amphilophus_citrinellus
ENSTRUG00000004413	dkc1	97	85.540	ENSAOCG00000013159	dkc1	93	86.957	Amphiprion_ocellaris
ENSTRUG00000004413	dkc1	97	85.540	ENSAPEG00000002284	dkc1	95	87.179	Amphiprion_percula
ENSTRUG00000004413	dkc1	87	88.128	ENSATEG00000013682	dkc1	90	86.928	Anabas_testudineus
ENSTRUG00000004413	dkc1	95	76.986	ENSACAG00000015600	DKC1	84	76.986	Anolis_carolinensis
ENSTRUG00000004413	dkc1	86	81.179	ENSANAG00000022732	DKC1	86	81.179	Aotus_nancymaae
ENSTRUG00000004413	dkc1	92	84.267	ENSACLG00000015605	dkc1	94	85.560	Astatotilapia_calliptera
ENSTRUG00000004413	dkc1	86	87.442	ENSAMXG00000017108	dkc1	92	81.513	Astyanax_mexicanus
ENSTRUG00000004413	dkc1	85	80.734	ENSBTAG00000013045	DKC1	86	80.275	Bos_taurus
ENSTRUG00000004413	dkc1	82	64.865	WBGene00010478	K01G5.5	97	62.269	Caenorhabditis_elegans
ENSTRUG00000004413	dkc1	86	81.279	ENSCJAG00000004210	DKC1	85	80.822	Callithrix_jacchus
ENSTRUG00000004413	dkc1	81	85.536	ENSCAFG00000019620	-	78	85.536	Canis_familiaris
ENSTRUG00000004413	dkc1	83	74.092	ENSCAFG00000009311	-	80	74.755	Canis_familiaris
ENSTRUG00000004413	dkc1	82	74.265	ENSCAFG00020009379	-	77	74.265	Canis_lupus_dingo
ENSTRUG00000004413	dkc1	81	85.536	ENSCAFG00020008918	-	78	85.536	Canis_lupus_dingo
ENSTRUG00000004413	dkc1	85	80.963	ENSCHIG00000017392	DKC1	86	80.505	Capra_hircus
ENSTRUG00000004413	dkc1	86	78.936	ENSTSYG00000007681	DKC1	86	78.936	Carlito_syrichta
ENSTRUG00000004413	dkc1	74	87.738	ENSCAPG00000003342	DKC1	83	88.430	Cavia_aperea
ENSTRUG00000004413	dkc1	79	87.089	ENSCPOG00000008825	DKC1	77	87.089	Cavia_porcellus
ENSTRUG00000004413	dkc1	86	71.429	ENSCCAG00000027418	DKC1	84	71.429	Cebus_capucinus
ENSTRUG00000004413	dkc1	86	80.726	ENSCATG00000033602	DKC1	86	80.726	Cercocebus_atys
ENSTRUG00000004413	dkc1	85	82.176	ENSCLAG00000000720	DKC1	85	82.176	Chinchilla_lanigera
ENSTRUG00000004413	dkc1	86	80.726	ENSCSAG00000006706	DKC1	86	80.726	Chlorocebus_sabaeus
ENSTRUG00000004413	dkc1	85	83.491	ENSCPBG00000005858	DKC1	90	83.491	Chrysemys_picta_bellii
ENSTRUG00000004413	dkc1	79	80.203	ENSCING00000004599	-	83	74.541	Ciona_intestinalis
ENSTRUG00000004413	dkc1	82	78.125	ENSCSAVG00000010047	-	92	77.859	Ciona_savignyi
ENSTRUG00000004413	dkc1	86	80.726	ENSCANG00000027987	DKC1	86	80.726	Colobus_angolensis_palliatus
ENSTRUG00000004413	dkc1	86	80.499	ENSCGRG00001014574	-	86	80.499	Cricetulus_griseus_chok1gshd
ENSTRUG00000004413	dkc1	77	66.146	ENSCGRG00001016789	-	79	67.663	Cricetulus_griseus_chok1gshd
ENSTRUG00000004413	dkc1	86	80.499	ENSCGRG00000016075	-	86	80.499	Cricetulus_griseus_crigri
ENSTRUG00000004413	dkc1	77	66.146	ENSCGRG00000014809	-	77	67.663	Cricetulus_griseus_crigri
ENSTRUG00000004413	dkc1	94	83.974	ENSCSEG00000012633	dkc1	96	84.749	Cynoglossus_semilaevis
ENSTRUG00000004413	dkc1	87	89.376	ENSCVAG00000010155	dkc1	84	89.559	Cyprinodon_variegatus
ENSTRUG00000004413	dkc1	83	91.019	ENSDARG00000016484	dkc1	91	85.000	Danio_rerio
ENSTRUG00000004413	dkc1	86	81.406	ENSDNOG00000004218	DKC1	86	81.406	Dasypus_novemcinctus
ENSTRUG00000004413	dkc1	55	73.091	ENSDORG00000013566	-	90	73.091	Dipodomys_ordii
ENSTRUG00000004413	dkc1	87	69.037	FBgn0259937	Nop60B	92	66.738	Drosophila_melanogaster
ENSTRUG00000004413	dkc1	79	86.548	ENSETEG00000016095	DKC1	80	86.548	Echinops_telfairi
ENSTRUG00000004413	dkc1	66	78.116	ENSEBUG00000015962	dkc1	98	81.443	Eptatretus_burgeri
ENSTRUG00000004413	dkc1	82	84.804	ENSEASG00005007484	DKC1	78	84.804	Equus_asinus_asinus
ENSTRUG00000004413	dkc1	82	84.804	ENSECAG00000023524	DKC1	78	84.804	Equus_caballus
ENSTRUG00000004413	dkc1	83	81.840	ENSEEUG00000003323	DKC1	95	85.075	Erinaceus_europaeus
ENSTRUG00000004413	dkc1	87	88.506	ENSELUG00000014538	dkc1	91	86.147	Esox_lucius
ENSTRUG00000004413	dkc1	79	86.835	ENSFCAG00000006577	DKC1	79	85.786	Felis_catus
ENSTRUG00000004413	dkc1	84	84.038	ENSFALG00000011496	DKC1	90	79.114	Ficedula_albicollis
ENSTRUG00000004413	dkc1	85	82.506	ENSFDAG00000002516	DKC1	85	82.506	Fukomys_damarensis
ENSTRUG00000004413	dkc1	86	88.732	ENSFHEG00000004627	dkc1	92	83.051	Fundulus_heteroclitus
ENSTRUG00000004413	dkc1	79	89.003	ENSGMOG00000017277	dkc1	100	89.003	Gadus_morhua
ENSTRUG00000004413	dkc1	85	83.916	ENSGALG00000005054	DKC1	89	78.867	Gallus_gallus
ENSTRUG00000004413	dkc1	90	88.444	ENSGAFG00000011486	dkc1	78	88.444	Gambusia_affinis
ENSTRUG00000004413	dkc1	79	93.655	ENSGACG00000004373	dkc1	96	94.833	Gasterosteus_aculeatus
ENSTRUG00000004413	dkc1	86	82.069	ENSGAGG00000011330	DKC1	84	82.299	Gopherus_agassizii
ENSTRUG00000004413	dkc1	86	80.952	ENSGGOG00000001045	DKC1	86	80.952	Gorilla_gorilla
ENSTRUG00000004413	dkc1	97	84.394	ENSHBUG00000012436	dkc1	97	85.216	Haplochromis_burtoni
ENSTRUG00000004413	dkc1	79	86.329	ENSHGLG00000000649	DKC1	90	78.326	Heterocephalus_glaber_female
ENSTRUG00000004413	dkc1	79	86.329	ENSHGLG00100001153	DKC1	91	78.326	Heterocephalus_glaber_male
ENSTRUG00000004413	dkc1	97	83.884	ENSHCOG00000021099	dkc1	88	88.209	Hippocampus_comes
ENSTRUG00000004413	dkc1	90	84.683	ENSIPUG00000010309	dkc1	85	85.649	Ictalurus_punctatus
ENSTRUG00000004413	dkc1	86	73.782	ENSSTOG00000020149	-	85	73.782	Ictidomys_tridecemlineatus
ENSTRUG00000004413	dkc1	86	79.864	ENSSTOG00000001074	-	91	79.864	Ictidomys_tridecemlineatus
ENSTRUG00000004413	dkc1	86	69.300	ENSSTOG00000011904	-	82	69.300	Ictidomys_tridecemlineatus
ENSTRUG00000004413	dkc1	55	73.091	ENSJJAG00000010086	-	91	73.091	Jaculus_jaculus
ENSTRUG00000004413	dkc1	86	87.822	ENSKMAG00000008010	dkc1	86	87.822	Kryptolebias_marmoratus
ENSTRUG00000004413	dkc1	86	90.187	ENSLBEG00000019122	dkc1	89	89.791	Labrus_bergylta
ENSTRUG00000004413	dkc1	86	83.023	ENSLACG00000014025	DKC1	90	87.817	Latimeria_chalumnae
ENSTRUG00000004413	dkc1	86	87.442	ENSLOCG00000013713	dkc1	96	81.277	Lepisosteus_oculatus
ENSTRUG00000004413	dkc1	86	80.499	ENSLAFG00000000221	DKC1	85	80.499	Loxodonta_africana
ENSTRUG00000004413	dkc1	86	80.952	ENSMFAG00000032398	DKC1	74	80.952	Macaca_fascicularis
ENSTRUG00000004413	dkc1	86	80.726	ENSMMUG00000005768	DKC1	86	80.726	Macaca_mulatta
ENSTRUG00000004413	dkc1	86	80.726	ENSMNEG00000034503	DKC1	86	80.726	Macaca_nemestrina
ENSTRUG00000004413	dkc1	86	80.726	ENSMLEG00000034422	DKC1	86	80.726	Mandrillus_leucophaeus
ENSTRUG00000004413	dkc1	81	93.300	ENSMAMG00000005427	dkc1	88	94.924	Mastacembelus_armatus
ENSTRUG00000004413	dkc1	97	84.600	ENSMZEG00005014503	dkc1	97	85.421	Maylandia_zebra
ENSTRUG00000004413	dkc1	78	85.641	ENSMGAG00000009238	DKC1	88	83.416	Meleagris_gallopavo
ENSTRUG00000004413	dkc1	55	72.364	ENSMAUG00000016454	-	90	72.364	Mesocricetus_auratus
ENSTRUG00000004413	dkc1	86	68.849	ENSMICG00000002818	-	99	76.712	Microcebus_murinus
ENSTRUG00000004413	dkc1	81	85.037	ENSMICG00000038751	-	80	85.037	Microcebus_murinus
ENSTRUG00000004413	dkc1	55	69.455	ENSMOCG00000001169	-	90	69.455	Microtus_ochrogaster
ENSTRUG00000004413	dkc1	84	90.238	ENSMMOG00000020348	dkc1	86	94.924	Mola_mola
ENSTRUG00000004413	dkc1	85	82.028	ENSMODG00000009243	DKC1	75	82.028	Monodelphis_domestica
ENSTRUG00000004413	dkc1	93	87.152	ENSMALG00000009454	dkc1	92	87.152	Monopterus_albus
ENSTRUG00000004413	dkc1	86	69.438	MGP_CAROLIEiJ_G0033191	Dkc1	84	83.871	Mus_caroli
ENSTRUG00000004413	dkc1	86	80.952	ENSMUSG00000031403	Dkc1	86	80.952	Mus_musculus
ENSTRUG00000004413	dkc1	86	80.499	MGP_PahariEiJ_G0031735	Dkc1	77	86.582	Mus_pahari
ENSTRUG00000004413	dkc1	86	80.952	MGP_SPRETEiJ_G0034351	Dkc1	85	80.952	Mus_spretus
ENSTRUG00000004413	dkc1	90	78.174	ENSMPUG00000016136	DKC1	77	83.373	Mustela_putorius_furo
ENSTRUG00000004413	dkc1	96	72.211	ENSMLUG00000011918	DKC1	94	72.874	Myotis_lucifugus
ENSTRUG00000004413	dkc1	55	73.091	ENSNGAG00000015724	-	91	73.091	Nannospalax_galili
ENSTRUG00000004413	dkc1	79	94.416	ENSNBRG00000005638	dkc1	80	94.416	Neolamprologus_brichardi
ENSTRUG00000004413	dkc1	86	80.726	ENSNLEG00000014323	DKC1	86	80.726	Nomascus_leucogenys
ENSTRUG00000004413	dkc1	81	82.544	ENSMEUG00000001066	DKC1	88	82.544	Notamacropus_eugenii
ENSTRUG00000004413	dkc1	70	80.058	ENSOPRG00000005248	DKC1	69	80.058	Ochotona_princeps
ENSTRUG00000004413	dkc1	55	72.727	ENSODEG00000000549	-	90	72.727	Octodon_degus
ENSTRUG00000004413	dkc1	79	88.101	ENSODEG00000011816	-	77	88.101	Octodon_degus
ENSTRUG00000004413	dkc1	97	85.832	ENSONIG00000013889	dkc1	97	86.653	Oreochromis_niloticus
ENSTRUG00000004413	dkc1	84	83.217	ENSOANG00000008713	-	90	82.759	Ornithorhynchus_anatinus
ENSTRUG00000004413	dkc1	56	61.386	ENSOANG00000022295	-	86	61.290	Ornithorhynchus_anatinus
ENSTRUG00000004413	dkc1	86	80.045	ENSOCUG00000012646	DKC1	86	80.045	Oryctolagus_cuniculus
ENSTRUG00000004413	dkc1	85	87.529	ENSORLG00000018748	dkc1	85	85.977	Oryzias_latipes
ENSTRUG00000004413	dkc1	89	88.009	ENSOMEG00000005786	dkc1	81	91.561	Oryzias_melastigma
ENSTRUG00000004413	dkc1	82	84.804	ENSOGAG00000003399	DKC1	77	85.786	Otolemur_garnettii
ENSTRUG00000004413	dkc1	85	80.734	ENSOARG00000003047	DKC1	86	80.734	Ovis_aries
ENSTRUG00000004413	dkc1	83	83.255	ENSPPAG00000023820	DKC1	86	81.179	Pan_paniscus
ENSTRUG00000004413	dkc1	79	86.835	ENSPPRG00000009104	DKC1	79	85.786	Panthera_pardus
ENSTRUG00000004413	dkc1	85	82.381	ENSPTIG00000017469	DKC1	85	83.055	Panthera_tigris_altaica
ENSTRUG00000004413	dkc1	86	80.952	ENSPTRG00000022449	DKC1	86	80.952	Pan_troglodytes
ENSTRUG00000004413	dkc1	86	80.952	ENSPTRG00000043416	-	74	80.952	Pan_troglodytes
ENSTRUG00000004413	dkc1	86	80.726	ENSPANG00000011978	DKC1	86	80.726	Papio_anubis
ENSTRUG00000004413	dkc1	87	85.550	ENSPKIG00000008443	dkc1	92	85.092	Paramormyrops_kingsleyae
ENSTRUG00000004413	dkc1	72	89.944	ENSPSIG00000013765	DKC1	86	89.944	Pelodiscus_sinensis
ENSTRUG00000004413	dkc1	95	76.566	ENSPMGG00000004097	dkc1	72	88.579	Periophthalmus_magnuspinnatus
ENSTRUG00000004413	dkc1	65	86.207	ENSPEMG00000013348	Dkc1	83	85.876	Peromyscus_maniculatus_bairdii
ENSTRUG00000004413	dkc1	81	86.284	ENSPCIG00000016706	DKC1	71	83.610	Phascolarctos_cinereus
ENSTRUG00000004413	dkc1	90	88.444	ENSPFOG00000018653	dkc1	95	84.615	Poecilia_formosa
ENSTRUG00000004413	dkc1	90	88.444	ENSPLAG00000003272	dkc1	81	88.444	Poecilia_latipinna
ENSTRUG00000004413	dkc1	90	88.444	ENSPMEG00000010413	dkc1	95	84.615	Poecilia_mexicana
ENSTRUG00000004413	dkc1	90	88.444	ENSPREG00000004100	dkc1	92	82.231	Poecilia_reticulata
ENSTRUG00000004413	dkc1	86	80.952	ENSPPYG00000020892	DKC1	86	80.952	Pongo_abelii
ENSTRUG00000004413	dkc1	74	86.450	ENSPCAG00000015034	DKC1	71	87.569	Procavia_capensis
ENSTRUG00000004413	dkc1	86	80.272	ENSPCOG00000026874	DKC1	86	80.272	Propithecus_coquereli
ENSTRUG00000004413	dkc1	96	77.731	ENSPVAG00000009222	DKC1	94	77.731	Pteropus_vampyrus
ENSTRUG00000004413	dkc1	93	83.122	ENSPNYG00000020063	dkc1	94	84.421	Pundamilia_nyererei
ENSTRUG00000004413	dkc1	87	86.468	ENSPNAG00000005780	dkc1	86	86.343	Pygocentrus_nattereri
ENSTRUG00000004413	dkc1	86	77.500	ENSRNOG00000055562	Dkc1	86	77.500	Rattus_norvegicus
ENSTRUG00000004413	dkc1	86	80.726	ENSRBIG00000028457	DKC1	74	80.726	Rhinopithecus_bieti
ENSTRUG00000004413	dkc1	86	80.726	ENSRROG00000044780	DKC1	86	80.726	Rhinopithecus_roxellana
ENSTRUG00000004413	dkc1	80	69.925	YLR175W	-	83	69.212	Saccharomyces_cerevisiae
ENSTRUG00000004413	dkc1	86	80.952	ENSSBOG00000033746	DKC1	85	80.952	Saimiri_boliviensis_boliviensis
ENSTRUG00000004413	dkc1	85	82.599	ENSSHAG00000002463	DKC1	92	82.069	Sarcophilus_harrisii
ENSTRUG00000004413	dkc1	86	86.605	ENSSFOG00015009585	dkc1	92	83.298	Scleropages_formosus
ENSTRUG00000004413	dkc1	86	88.940	ENSSMAG00000002552	dkc1	85	88.940	Scophthalmus_maximus
ENSTRUG00000004413	dkc1	93	88.387	ENSSDUG00000009963	dkc1	97	86.037	Seriola_dumerili
ENSTRUG00000004413	dkc1	93	86.853	ENSSLDG00000019342	dkc1	94	86.022	Seriola_lalandi_dorsalis
ENSTRUG00000004413	dkc1	85	77.064	ENSSARG00000001822	DKC1	87	77.064	Sorex_araneus
ENSTRUG00000004413	dkc1	83	83.816	ENSSPUG00000018907	DKC1	86	79.646	Sphenodon_punctatus
ENSTRUG00000004413	dkc1	86	90.676	ENSSPAG00000002585	dkc1	82	90.255	Stegastes_partitus
ENSTRUG00000004413	dkc1	96	75.301	ENSSSCG00000012823	DKC1	85	84.804	Sus_scrofa
ENSTRUG00000004413	dkc1	73	91.436	ENSTGUG00000006781	DKC1	89	84.367	Taeniopygia_guttata
ENSTRUG00000004413	dkc1	100	75.538	ENSTNIG00000002582	dkc1	100	75.538	Tetraodon_nigroviridis
ENSTRUG00000004413	dkc1	54	86.245	ENSTBEG00000011262	DKC1	85	79.677	Tupaia_belangeri
ENSTRUG00000004413	dkc1	56	87.004	ENSTTRG00000008089	DKC1	55	87.004	Tursiops_truncatus
ENSTRUG00000004413	dkc1	84	83.413	ENSUAMG00000022721	DKC1	88	83.413	Ursus_americanus
ENSTRUG00000004413	dkc1	85	82.547	ENSUMAG00000016899	DKC1	98	83.500	Ursus_maritimus
ENSTRUG00000004413	dkc1	84	68.571	ENSVVUG00000021671	-	75	69.779	Vulpes_vulpes
ENSTRUG00000004413	dkc1	91	77.074	ENSVVUG00000020734	-	84	73.185	Vulpes_vulpes
ENSTRUG00000004413	dkc1	93	81.505	ENSXETG00000032517	DKC1	84	85.882	Xenopus_tropicalis
ENSTRUG00000004413	dkc1	86	88.372	ENSXCOG00000005498	dkc1	92	88.372	Xiphophorus_couchianus
ENSTRUG00000004413	dkc1	90	88.000	ENSXMAG00000004919	dkc1	90	88.000	Xiphophorus_maculatus