EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000004516 (Gene tree)
Gene ID: 101073684
Gene Symbol: sf3b4
Alias: chunp6902|fb36a04|wu:fb36a04
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 2914 bases
Position: chr12:2750521-2753434
Accession: 101073684
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000010718	RRM_1	PF00076.22	2.5e-39	1	2
ENSTRUP00000010718	RRM_1	PF00076.22	2.5e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000010776	-	1812	XM_003968923	ENSTRUP00000010718	397 (aa)	XP_003968972	H2SE87

Gene Model

Click here to download ENSTRUG00000004516's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000004516's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000004516	sf3b4	57	96.491	ENSG00000143368	SF3B4	97	96.196	Homo_sapiens
ENSTRUG00000004516	sf3b4	58	98.696	ENSAPOG00000017647	sf3b4	80	89.623	Acanthochromis_polyacanthus
ENSTRUG00000004516	sf3b4	57	96.491	ENSAMEG00000010073	SF3B4	54	96.916	Ailuropoda_melanoleuca
ENSTRUG00000004516	sf3b4	59	98.305	ENSAOCG00000019801	sf3b4	80	89.623	Amphiprion_ocellaris
ENSTRUG00000004516	sf3b4	59	98.305	ENSAPEG00000010365	sf3b4	80	89.623	Amphiprion_percula
ENSTRUG00000004516	sf3b4	58	98.261	ENSATEG00000012844	sf3b4	79	89.655	Anabas_testudineus
ENSTRUG00000004516	sf3b4	54	100.000	ENSACAG00000010019	SF3B4	54	97.788	Anolis_carolinensis
ENSTRUG00000004516	sf3b4	57	96.491	ENSANAG00000031025	SF3B4	54	96.916	Aotus_nancymaae
ENSTRUG00000004516	sf3b4	60	96.624	ENSACLG00000014260	sf3b4	79	89.590	Astatotilapia_calliptera
ENSTRUG00000004516	sf3b4	58	97.391	ENSAMXG00000008282	sf3b4	80	84.735	Astyanax_mexicanus
ENSTRUG00000004516	sf3b4	57	96.491	ENSBTAG00000012495	SF3B4	54	96.916	Bos_taurus
ENSTRUG00000004516	sf3b4	68	70.370	WBGene00004723	sap-49	83	63.467	Caenorhabditis_elegans
ENSTRUG00000004516	sf3b4	57	96.491	ENSCAFG00000011617	SF3B4	54	96.916	Canis_familiaris
ENSTRUG00000004516	sf3b4	57	96.491	ENSCAFG00020019775	SF3B4	54	96.916	Canis_lupus_dingo
ENSTRUG00000004516	sf3b4	57	96.491	ENSCHIG00000025663	-	54	96.916	Capra_hircus
ENSTRUG00000004516	sf3b4	57	96.491	ENSTSYG00000009295	SF3B4	54	96.916	Carlito_syrichta
ENSTRUG00000004516	sf3b4	57	96.491	ENSCPOG00000008267	SF3B4	54	96.916	Cavia_porcellus
ENSTRUG00000004516	sf3b4	57	95.614	ENSCCAG00000021751	-	51	96.035	Cebus_capucinus
ENSTRUG00000004516	sf3b4	57	96.491	ENSCATG00000033114	SF3B4	54	96.916	Cercocebus_atys
ENSTRUG00000004516	sf3b4	57	96.491	ENSCLAG00000015851	SF3B4	54	96.916	Chinchilla_lanigera
ENSTRUG00000004516	sf3b4	57	96.491	ENSCSAG00000018129	SF3B4	54	96.916	Chlorocebus_sabaeus
ENSTRUG00000004516	sf3b4	54	100.000	ENSCPBG00000008041	SF3B4	54	97.357	Chrysemys_picta_bellii
ENSTRUG00000004516	sf3b4	55	89.862	ENSCING00000002337	-	58	90.698	Ciona_intestinalis
ENSTRUG00000004516	sf3b4	52	89.881	ENSCSAVG00000007809	-	91	89.474	Ciona_savignyi
ENSTRUG00000004516	sf3b4	57	96.491	ENSCANG00000035579	SF3B4	54	96.916	Colobus_angolensis_palliatus
ENSTRUG00000004516	sf3b4	57	96.491	ENSCGRG00001003590	Sf3b4	54	96.916	Cricetulus_griseus_chok1gshd
ENSTRUG00000004516	sf3b4	57	96.491	ENSCGRG00000016914	Sf3b4	54	96.916	Cricetulus_griseus_crigri
ENSTRUG00000004516	sf3b4	74	90.268	ENSCSEG00000015258	sf3b4	66	89.937	Cynoglossus_semilaevis
ENSTRUG00000004516	sf3b4	67	93.609	ENSCVAG00000005536	sf3b4	81	87.736	Cyprinodon_variegatus
ENSTRUG00000004516	sf3b4	58	97.391	ENSDARG00000018574	sf3b4	80	88.088	Danio_rerio
ENSTRUG00000004516	sf3b4	97	61.823	ENSDNOG00000037231	-	54	81.944	Dasypus_novemcinctus
ENSTRUG00000004516	sf3b4	55	90.909	ENSDNOG00000048908	-	52	91.324	Dasypus_novemcinctus
ENSTRUG00000004516	sf3b4	57	96.491	ENSDORG00000016366	Sf3b4	54	96.916	Dipodomys_ordii
ENSTRUG00000004516	sf3b4	57	86.404	ENSETEG00000008963	SF3B4	53	86.784	Echinops_telfairi
ENSTRUG00000004516	sf3b4	57	96.491	ENSEASG00005001477	SF3B4	54	96.916	Equus_asinus_asinus
ENSTRUG00000004516	sf3b4	57	96.491	ENSECAG00000024737	SF3B4	54	96.916	Equus_caballus
ENSTRUG00000004516	sf3b4	86	84.615	ENSELUG00000012876	sf3b4	79	88.715	Esox_lucius
ENSTRUG00000004516	sf3b4	57	96.491	ENSFCAG00000010106	SF3B4	54	96.916	Felis_catus
ENSTRUG00000004516	sf3b4	57	96.491	ENSFDAG00000009286	SF3B4	54	96.916	Fukomys_damarensis
ENSTRUG00000004516	sf3b4	86	69.298	ENSGMOG00000002519	sf3b4	67	97.797	Gadus_morhua
ENSTRUG00000004516	sf3b4	54	100.000	ENSGALG00000013352	SF3B4	54	97.797	Gallus_gallus
ENSTRUG00000004516	sf3b4	67	94.361	ENSGAFG00000010181	sf3b4	80	90.221	Gambusia_affinis
ENSTRUG00000004516	sf3b4	60	98.319	ENSGACG00000003819	sf3b4	79	90.159	Gasterosteus_aculeatus
ENSTRUG00000004516	sf3b4	99	59.611	ENSGGOG00000038845	-	57	86.547	Gorilla_gorilla
ENSTRUG00000004516	sf3b4	57	96.491	ENSGGOG00000004761	SF3B4	54	96.916	Gorilla_gorilla
ENSTRUG00000004516	sf3b4	60	96.624	ENSHBUG00000002028	sf3b4	79	89.590	Haplochromis_burtoni
ENSTRUG00000004516	sf3b4	57	96.491	ENSHGLG00000012360	SF3B4	54	96.916	Heterocephalus_glaber_female
ENSTRUG00000004516	sf3b4	57	96.491	ENSHGLG00100008533	SF3B4	54	96.916	Heterocephalus_glaber_male
ENSTRUG00000004516	sf3b4	57	97.797	ENSHCOG00000003014	sf3b4	79	84.227	Hippocampus_comes
ENSTRUG00000004516	sf3b4	58	97.826	ENSIPUG00000012242	Sf3b4	79	86.875	Ictalurus_punctatus
ENSTRUG00000004516	sf3b4	57	96.491	ENSSTOG00000000684	-	54	96.916	Ictidomys_tridecemlineatus
ENSTRUG00000004516	sf3b4	56	68.889	ENSJJAG00000022500	Sf3b4	53	69.403	Jaculus_jaculus
ENSTRUG00000004516	sf3b4	67	94.030	ENSKMAG00000008154	sf3b4	81	87.421	Kryptolebias_marmoratus
ENSTRUG00000004516	sf3b4	59	97.425	ENSLBEG00000026818	sf3b4	79	90.536	Labrus_bergylta
ENSTRUG00000004516	sf3b4	57	95.614	ENSLACG00000004436	SF3B4	63	96.035	Latimeria_chalumnae
ENSTRUG00000004516	sf3b4	58	97.414	ENSLOCG00000009048	sf3b4	77	82.209	Lepisosteus_oculatus
ENSTRUG00000004516	sf3b4	57	96.491	ENSLAFG00000008531	SF3B4	53	96.916	Loxodonta_africana
ENSTRUG00000004516	sf3b4	93	59.151	ENSMFAG00000039067	-	57	77.934	Macaca_fascicularis
ENSTRUG00000004516	sf3b4	57	96.491	ENSMFAG00000042395	SF3B4	54	96.916	Macaca_fascicularis
ENSTRUG00000004516	sf3b4	57	96.491	ENSMMUG00000007256	SF3B4	54	96.916	Macaca_mulatta
ENSTRUG00000004516	sf3b4	93	58.621	ENSMNEG00000031526	-	57	77.465	Macaca_nemestrina
ENSTRUG00000004516	sf3b4	57	96.491	ENSMNEG00000031839	SF3B4	54	96.916	Macaca_nemestrina
ENSTRUG00000004516	sf3b4	57	96.491	ENSMLEG00000038667	SF3B4	54	96.916	Mandrillus_leucophaeus
ENSTRUG00000004516	sf3b4	60	96.624	ENSMAMG00000014692	sf3b4	80	88.401	Mastacembelus_armatus
ENSTRUG00000004516	sf3b4	60	96.624	ENSMZEG00005026741	sf3b4	79	89.590	Maylandia_zebra
ENSTRUG00000004516	sf3b4	54	100.000	ENSMGAG00000000653	SF3B4	55	97.797	Meleagris_gallopavo
ENSTRUG00000004516	sf3b4	57	96.491	ENSMAUG00000015266	Sf3b4	54	96.916	Mesocricetus_auratus
ENSTRUG00000004516	sf3b4	57	96.491	ENSMICG00000044961	SF3B4	54	96.916	Microcebus_murinus
ENSTRUG00000004516	sf3b4	57	96.491	ENSMOCG00000013658	-	54	96.916	Microtus_ochrogaster
ENSTRUG00000004516	sf3b4	52	98.049	ENSMOCG00000014155	-	54	94.954	Microtus_ochrogaster
ENSTRUG00000004516	sf3b4	57	96.491	ENSMODG00000018767	SF3B4	54	96.916	Monodelphis_domestica
ENSTRUG00000004516	sf3b4	57	98.678	ENSMALG00000006174	sf3b4	79	88.401	Monopterus_albus
ENSTRUG00000004516	sf3b4	57	96.491	MGP_CAROLIEiJ_G0025365	Sf3b4	54	96.916	Mus_caroli
ENSTRUG00000004516	sf3b4	57	96.491	ENSMUSG00000068856	Sf3b4	54	96.916	Mus_musculus
ENSTRUG00000004516	sf3b4	57	96.491	MGP_PahariEiJ_G0026809	Sf3b4	54	96.916	Mus_pahari
ENSTRUG00000004516	sf3b4	57	96.491	MGP_SPRETEiJ_G0026309	Sf3b4	54	96.916	Mus_spretus
ENSTRUG00000004516	sf3b4	57	96.491	ENSMPUG00000005563	SF3B4	54	96.916	Mustela_putorius_furo
ENSTRUG00000004516	sf3b4	57	96.491	ENSMLUG00000010789	SF3B4	54	96.916	Myotis_lucifugus
ENSTRUG00000004516	sf3b4	57	96.491	ENSNGAG00000016337	Sf3b4	54	96.916	Nannospalax_galili
ENSTRUG00000004516	sf3b4	60	96.624	ENSNBRG00000013865	sf3b4	79	89.905	Neolamprologus_brichardi
ENSTRUG00000004516	sf3b4	99	47.907	ENSNLEG00000009693	-	99	47.907	Nomascus_leucogenys
ENSTRUG00000004516	sf3b4	96	64.051	ENSNLEG00000000537	-	58	87.665	Nomascus_leucogenys
ENSTRUG00000004516	sf3b4	57	92.105	ENSOPRG00000010808	SF3B4	54	92.511	Ochotona_princeps
ENSTRUG00000004516	sf3b4	89	58.133	ENSODEG00000008916	-	55	76.415	Octodon_degus
ENSTRUG00000004516	sf3b4	57	79.913	ENSODEG00000003597	-	56	80.263	Octodon_degus
ENSTRUG00000004516	sf3b4	60	96.203	ENSONIG00000002730	sf3b4	79	87.382	Oreochromis_niloticus
ENSTRUG00000004516	sf3b4	65	71.642	ENSOANG00000004768	-	50	81.944	Ornithorhynchus_anatinus
ENSTRUG00000004516	sf3b4	57	96.491	ENSOCUG00000004614	SF3B4	54	96.916	Oryctolagus_cuniculus
ENSTRUG00000004516	sf3b4	74	90.203	ENSORLG00000003062	sf3b4	82	88.365	Oryzias_latipes
ENSTRUG00000004516	sf3b4	74	90.203	ENSORLG00020000687	sf3b4	80	88.365	Oryzias_latipes_hni
ENSTRUG00000004516	sf3b4	74	90.203	ENSORLG00015010989	sf3b4	80	88.365	Oryzias_latipes_hsok
ENSTRUG00000004516	sf3b4	58	96.983	ENSOMEG00000013694	sf3b4	80	89.308	Oryzias_melastigma
ENSTRUG00000004516	sf3b4	57	96.491	ENSOGAG00000006265	SF3B4	54	96.916	Otolemur_garnettii
ENSTRUG00000004516	sf3b4	62	77.328	ENSOARG00000007368	-	55	80.717	Ovis_aries
ENSTRUG00000004516	sf3b4	57	96.491	ENSOARG00000020718	-	54	96.916	Ovis_aries
ENSTRUG00000004516	sf3b4	57	96.491	ENSPPAG00000040904	SF3B4	54	96.916	Pan_paniscus
ENSTRUG00000004516	sf3b4	74	74.754	ENSPPAG00000030024	-	55	86.344	Pan_paniscus
ENSTRUG00000004516	sf3b4	57	96.491	ENSPPRG00000007384	SF3B4	54	96.916	Panthera_pardus
ENSTRUG00000004516	sf3b4	57	96.491	ENSPTIG00000014530	SF3B4	54	96.916	Panthera_tigris_altaica
ENSTRUG00000004516	sf3b4	74	75.758	ENSPTRG00000049727	-	57	86.784	Pan_troglodytes
ENSTRUG00000004516	sf3b4	57	96.491	ENSPTRG00000001243	SF3B4	54	96.916	Pan_troglodytes
ENSTRUG00000004516	sf3b4	57	96.491	ENSPANG00000005126	SF3B4	54	96.916	Papio_anubis
ENSTRUG00000004516	sf3b4	59	97.863	ENSPKIG00000020669	sf3b4	84	87.188	Paramormyrops_kingsleyae
ENSTRUG00000004516	sf3b4	57	96.491	ENSPEMG00000017568	Sf3b4	54	96.916	Peromyscus_maniculatus_bairdii
ENSTRUG00000004516	sf3b4	54	95.305	ENSPMAG00000007842	-	53	93.778	Petromyzon_marinus
ENSTRUG00000004516	sf3b4	57	96.491	ENSPCIG00000008765	SF3B4	54	96.916	Phascolarctos_cinereus
ENSTRUG00000004516	sf3b4	67	95.131	ENSPFOG00000005754	sf3b4	81	90.566	Poecilia_formosa
ENSTRUG00000004516	sf3b4	67	95.131	ENSPLAG00000001401	sf3b4	88	88.679	Poecilia_latipinna
ENSTRUG00000004516	sf3b4	67	94.757	ENSPREG00000011076	sf3b4	82	84.894	Poecilia_reticulata
ENSTRUG00000004516	sf3b4	52	96.635	ENSPCAG00000000392	SF3B4	50	96.635	Procavia_capensis
ENSTRUG00000004516	sf3b4	57	96.491	ENSPCOG00000015399	SF3B4	54	96.916	Propithecus_coquereli
ENSTRUG00000004516	sf3b4	57	96.491	ENSPVAG00000014171	SF3B4	54	96.916	Pteropus_vampyrus
ENSTRUG00000004516	sf3b4	60	96.624	ENSPNYG00000012700	sf3b4	79	89.590	Pundamilia_nyererei
ENSTRUG00000004516	sf3b4	58	97.826	ENSPNAG00000000686	sf3b4	82	86.916	Pygocentrus_nattereri
ENSTRUG00000004516	sf3b4	57	96.491	ENSRNOG00000021181	Sf3b4	54	96.916	Rattus_norvegicus
ENSTRUG00000004516	sf3b4	57	96.491	ENSRBIG00000043392	SF3B4	54	96.916	Rhinopithecus_bieti
ENSTRUG00000004516	sf3b4	57	96.491	ENSRROG00000029366	SF3B4	54	96.916	Rhinopithecus_roxellana
ENSTRUG00000004516	sf3b4	90	56.117	ENSRROG00000028213	-	55	73.059	Rhinopithecus_roxellana
ENSTRUG00000004516	sf3b4	57	96.053	ENSSBOG00000012310	-	54	96.476	Saimiri_boliviensis_boliviensis
ENSTRUG00000004516	sf3b4	57	91.667	ENSSHAG00000004043	SF3B4	53	92.070	Sarcophilus_harrisii
ENSTRUG00000004516	sf3b4	60	96.624	ENSSFOG00015008864	sf3b4	79	88.162	Scleropages_formosus
ENSTRUG00000004516	sf3b4	74	91.611	ENSSMAG00000006837	sf3b4	80	91.824	Scophthalmus_maximus
ENSTRUG00000004516	sf3b4	67	94.361	ENSSDUG00000012064	sf3b4	79	90.282	Seriola_dumerili
ENSTRUG00000004516	sf3b4	67	94.737	ENSSLDG00000014226	sf3b4	79	90.596	Seriola_lalandi_dorsalis
ENSTRUG00000004516	sf3b4	59	97.881	ENSSPAG00000019219	sf3b4	79	90.596	Stegastes_partitus
ENSTRUG00000004516	sf3b4	57	96.491	ENSSSCG00000006665	-	54	96.916	Sus_scrofa
ENSTRUG00000004516	sf3b4	78	56.688	ENSSSCG00000039440	-	55	62.996	Sus_scrofa
ENSTRUG00000004516	sf3b4	59	95.763	ENSTGUG00000004470	SF3B4	89	97.357	Taeniopygia_guttata
ENSTRUG00000004516	sf3b4	100	95.477	ENSTNIG00000009156	sf3b4	100	95.477	Tetraodon_nigroviridis
ENSTRUG00000004516	sf3b4	57	96.491	ENSTTRG00000005217	SF3B4	54	96.916	Tursiops_truncatus
ENSTRUG00000004516	sf3b4	57	96.491	ENSUAMG00000022468	SF3B4	54	96.916	Ursus_americanus
ENSTRUG00000004516	sf3b4	57	96.491	ENSUMAG00000003802	SF3B4	54	96.916	Ursus_maritimus
ENSTRUG00000004516	sf3b4	54	96.296	ENSVPAG00000008152	SF3B4	52	96.744	Vicugna_pacos
ENSTRUG00000004516	sf3b4	76	78.878	ENSXETG00000011038	sf3b4	55	100.000	Xenopus_tropicalis
ENSTRUG00000004516	sf3b4	67	93.633	ENSXCOG00000019895	sf3b4	81	90.566	Xiphophorus_couchianus
ENSTRUG00000004516	sf3b4	67	93.609	ENSXMAG00000003772	sf3b4	81	90.566	Xiphophorus_maculatus