EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000004597 (Gene tree)
Gene ID: 101072647
Gene Symbol: -
Alias: -
Full Name: calreticulin
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 4217 bases
Position: chr20:6947598-6951814
Accession: 101072647
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000056545	Calreticulin	PF00262.18	6.1e-83	1	2
ENSTRUP00000056545	Calreticulin	PF00262.18	6.1e-83	2	2
ENSTRUP00000010934	Calreticulin	PF00262.18	8e-64	1	2
ENSTRUP00000010934	Calreticulin	PF00262.18	8e-64	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000010993	-	1152	-	ENSTRUP00000010934	383 (aa)	-	H2SEV3
ENSTRUT00000057256	-	2041	XM_003974169	ENSTRUP00000056545	431 (aa)	XP_003974218	UPI000035F145

Gene Model

Click here to download ENSTRUG00000004597's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru04141	Protein processing in endoplasmic reticulum	KEGG
tru04145	Phagosome	KEGG
tru05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000004597's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000004597	-	83	77.809	ENSTRUG00000009578	calr3b	83	78.249
ENSTRUG00000004597	-	77	37.531	ENSTRUG00000003449	-	54	37.531
ENSTRUG00000004597	-	72	39.726	ENSTRUG00000001564	canx	66	40.227

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000004597	-	88	85.488	ENSAMXG00000018577	-	86	85.950	Astyanax_mexicanus
ENSTRUG00000004597	-	80	78.902	ENSCAFG00000017093	CALR	88	76.880	Canis_familiaris
ENSTRUG00000004597	-	100	72.622	ENSCPBG00000023916	-	85	85.032	Chrysemys_picta_bellii
ENSTRUG00000004597	-	82	76.705	ENSDARG00000103979	calr3a	84	76.705	Danio_rerio
ENSTRUG00000004597	-	76	34.509	FBgn0264077	Cnx14D	61	34.184	Drosophila_melanogaster
ENSTRUG00000004597	-	87	67.287	FBgn0005585	Calr	88	67.769	Drosophila_melanogaster
ENSTRUG00000004597	-	82	71.268	ENSEBUG00000008568	calr3a	83	69.944	Eptatretus_burgeri
ENSTRUG00000004597	-	84	75.691	ENSELUG00000008294	-	86	75.691	Esox_lucius
ENSTRUG00000004597	-	88	80.206	ENSFHEG00000000123	-	89	80.829	Fundulus_heteroclitus
ENSTRUG00000004597	-	84	90.608	ENSMAMG00000003716	-	100	88.863	Mastacembelus_armatus
ENSTRUG00000004597	-	100	83.447	ENSMMOG00000020031	-	83	89.286	Mola_mola
ENSTRUG00000004597	-	96	71.498	ENSMLUG00000012776	-	86	77.437	Myotis_lucifugus
ENSTRUG00000004597	-	82	85.987	ENSORLG00000017171	-	84	85.987	Oryzias_latipes
ENSTRUG00000004597	-	84	86.464	ENSOMEG00000010424	-	85	86.464	Oryzias_melastigma
ENSTRUG00000004597	-	77	37.028	ENSPSIG00000009344	-	61	37.563	Pelodiscus_sinensis
ENSTRUG00000004597	-	77	84.179	ENSPSIG00000012928	-	85	84.431	Pelodiscus_sinensis
ENSTRUG00000004597	-	77	39.295	ENSPSIG00000003895	-	69	39.295	Pelodiscus_sinensis
ENSTRUG00000004597	-	84	85.359	ENSPNAG00000016813	-	90	85.185	Pygocentrus_nattereri
ENSTRUG00000004597	-	88	73.351	ENSSMAG00000005047	calr3a	82	67.778	Scophthalmus_maximus
ENSTRUG00000004597	-	77	38.734	ENSSDUG00000002378	-	54	38.734	Seriola_dumerili
ENSTRUG00000004597	-	77	38.734	ENSSLDG00000020527	-	61	40.407	Seriola_lalandi_dorsalis
ENSTRUG00000004597	-	84	77.135	ENSXETG00000007937	calr	87	77.348	Xenopus_tropicalis