EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000004895 (Gene tree)
Gene ID: 101074214
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 15692 bases
Position: chr22:6281773-6297464
Accession: 101074214
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000011686	XRN_N	PF03159.18	3.2e-95	1	1
ENSTRUP00000011685	XRN_N	PF03159.18	3.3e-95	1	1
ENSTRUP00000011687	XRN_N	PF03159.18	8.3e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000011745	-	4725	XM_003975540	ENSTRUP00000011685	1574 (aa)	XP_003975589	H2SH03
ENSTRUT00000011746	-	4626	-	ENSTRUP00000011686	1541 (aa)	-	H2SH04
ENSTRUT00000011747	-	1437	-	ENSTRUP00000011687	478 (aa)	-	H2SH05

Gene Model

Click here to download ENSTRUG00000004895's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03008	Ribosome biogenesis in eukaryotes	KEGG
tru03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000004895's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000004895	xrn1	97	37.618	ENSTRUG00000015489	xrn2	69	40.177

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000004895	xrn1	96	75.157	ENSG00000114127	XRN1	96	93.204	Homo_sapiens
ENSTRUG00000004895	xrn1	96	87.554	ENSAPOG00000000622	xrn1	98	82.104	Acanthochromis_polyacanthus
ENSTRUG00000004895	xrn1	96	76.618	ENSAMEG00000012538	XRN1	94	69.500	Ailuropoda_melanoleuca
ENSTRUG00000004895	xrn1	97	85.745	ENSACIG00000001057	xrn1	99	73.545	Amphilophus_citrinellus
ENSTRUG00000004895	xrn1	96	87.554	ENSAOCG00000014097	xrn1	98	77.972	Amphiprion_ocellaris
ENSTRUG00000004895	xrn1	96	87.768	ENSAPEG00000006620	xrn1	100	77.273	Amphiprion_percula
ENSTRUG00000004895	xrn1	96	80.171	ENSATEG00000009752	xrn1	99	79.718	Anabas_testudineus
ENSTRUG00000004895	xrn1	96	77.897	ENSAPLG00000004905	XRN1	94	69.505	Anas_platyrhynchos
ENSTRUG00000004895	xrn1	96	75.796	ENSACAG00000004985	XRN1	95	68.323	Anolis_carolinensis
ENSTRUG00000004895	xrn1	96	75.574	ENSANAG00000029013	XRN1	99	71.781	Aotus_nancymaae
ENSTRUG00000004895	xrn1	96	84.222	ENSACLG00000004806	xrn1	99	72.157	Astatotilapia_calliptera
ENSTRUG00000004895	xrn1	97	73.885	ENSAMXG00000019370	xrn1	96	94.231	Astyanax_mexicanus
ENSTRUG00000004895	xrn1	96	76.200	ENSBTAG00000011524	XRN1	100	58.300	Bos_taurus
ENSTRUG00000004895	xrn1	97	45.779	WBGene00012730	xrn-1	71	61.930	Caenorhabditis_elegans
ENSTRUG00000004895	xrn1	96	75.365	ENSCJAG00000001872	XRN1	100	58.974	Callithrix_jacchus
ENSTRUG00000004895	xrn1	96	79.274	ENSCAFG00000007783	XRN1	94	69.984	Canis_familiaris
ENSTRUG00000004895	xrn1	96	77.244	ENSCAFG00020009120	XRN1	99	74.960	Canis_lupus_dingo
ENSTRUG00000004895	xrn1	96	75.783	ENSCHIG00000019192	XRN1	94	69.188	Capra_hircus
ENSTRUG00000004895	xrn1	96	76.409	ENSTSYG00000002705	XRN1	100	58.673	Carlito_syrichta
ENSTRUG00000004895	xrn1	96	58.635	ENSCAPG00000004604	-	99	58.796	Cavia_aperea
ENSTRUG00000004895	xrn1	96	75.574	ENSCCAG00000034800	XRN1	99	77.316	Cebus_capucinus
ENSTRUG00000004895	xrn1	96	75.365	ENSCATG00000041794	XRN1	100	58.950	Cercocebus_atys
ENSTRUG00000004895	xrn1	96	77.399	ENSCLAG00000001451	XRN1	99	77.157	Chinchilla_lanigera
ENSTRUG00000004895	xrn1	96	75.574	ENSCSAG00000011265	XRN1	100	58.565	Chlorocebus_sabaeus
ENSTRUG00000004895	xrn1	97	57.082	ENSCING00000001334	-	95	72.087	Ciona_intestinalis
ENSTRUG00000004895	xrn1	96	58.785	ENSCSAVG00000008584	-	93	49.697	Ciona_savignyi
ENSTRUG00000004895	xrn1	96	75.574	ENSCANG00000037495	XRN1	99	77.316	Colobus_angolensis_palliatus
ENSTRUG00000004895	xrn1	96	75.316	ENSCGRG00001019411	Xrn1	99	76.387	Cricetulus_griseus_chok1gshd
ENSTRUG00000004895	xrn1	96	75.316	ENSCGRG00000012464	Xrn1	99	76.387	Cricetulus_griseus_crigri
ENSTRUG00000004895	xrn1	97	86.364	ENSCSEG00000021285	xrn1	94	96.154	Cynoglossus_semilaevis
ENSTRUG00000004895	xrn1	97	84.848	ENSCVAG00000013089	xrn1	99	84.553	Cyprinodon_variegatus
ENSTRUG00000004895	xrn1	96	80.000	ENSDARG00000091652	xrn1	98	80.591	Danio_rerio
ENSTRUG00000004895	xrn1	96	78.038	ENSDORG00000013833	Xrn1	100	58.367	Dipodomys_ordii
ENSTRUG00000004895	xrn1	96	51.709	FBgn0020261	pcm	71	42.419	Drosophila_melanogaster
ENSTRUG00000004895	xrn1	97	59.167	ENSETEG00000003978	XRN1	88	64.463	Echinops_telfairi
ENSTRUG00000004895	xrn1	96	78.834	ENSEASG00005002687	XRN1	99	77.955	Equus_asinus_asinus
ENSTRUG00000004895	xrn1	96	78.038	ENSECAG00000008301	XRN1	100	58.637	Equus_caballus
ENSTRUG00000004895	xrn1	96	77.897	ENSEEUG00000011323	XRN1	83	81.019	Erinaceus_europaeus
ENSTRUG00000004895	xrn1	96	79.114	ENSELUG00000000169	xrn1	100	66.609	Esox_lucius
ENSTRUG00000004895	xrn1	96	64.375	ENSFCAG00000027589	XRN1	99	78.901	Felis_catus
ENSTRUG00000004895	xrn1	99	75.934	ENSFALG00000007021	XRN1	94	69.153	Ficedula_albicollis
ENSTRUG00000004895	xrn1	96	77.612	ENSFDAG00000020494	XRN1	99	77.193	Fukomys_damarensis
ENSTRUG00000004895	xrn1	97	80.736	ENSFHEG00000017356	-	98	82.018	Fundulus_heteroclitus
ENSTRUG00000004895	xrn1	97	78.571	ENSGMOG00000006396	xrn1	84	74.353	Gadus_morhua
ENSTRUG00000004895	xrn1	99	73.428	ENSGALG00000002706	XRN1	94	68.952	Gallus_gallus
ENSTRUG00000004895	xrn1	96	85.897	ENSGACG00000014328	xrn1	95	82.129	Gasterosteus_aculeatus
ENSTRUG00000004895	xrn1	99	75.926	ENSGAGG00000017535	XRN1	93	69.129	Gopherus_agassizii
ENSTRUG00000004895	xrn1	96	74.948	ENSGGOG00000008047	XRN1	100	58.879	Gorilla_gorilla
ENSTRUG00000004895	xrn1	99	79.418	ENSHBUG00000005908	xrn1	97	77.963	Haplochromis_burtoni
ENSTRUG00000004895	xrn1	96	77.825	ENSHGLG00000014476	XRN1	99	77.352	Heterocephalus_glaber_female
ENSTRUG00000004895	xrn1	96	77.825	ENSHGLG00100015130	XRN1	99	77.352	Heterocephalus_glaber_male
ENSTRUG00000004895	xrn1	99	81.314	ENSHCOG00000014062	xrn1	99	79.676	Hippocampus_comes
ENSTRUG00000004895	xrn1	96	78.678	ENSIPUG00000015229	xrn1	100	65.629	Ictalurus_punctatus
ENSTRUG00000004895	xrn1	96	76.409	ENSSTOG00000013552	XRN1	99	77.316	Ictidomys_tridecemlineatus
ENSTRUG00000004895	xrn1	96	77.350	ENSJJAG00000010863	Xrn1	99	76.500	Jaculus_jaculus
ENSTRUG00000004895	xrn1	96	86.334	ENSKMAG00000021356	xrn1	95	84.797	Kryptolebias_marmoratus
ENSTRUG00000004895	xrn1	99	85.595	ENSLBEG00000018656	xrn1	97	97.087	Labrus_bergylta
ENSTRUG00000004895	xrn1	96	77.399	ENSLACG00000009020	XRN1	94	69.225	Latimeria_chalumnae
ENSTRUG00000004895	xrn1	96	81.562	ENSLOCG00000007944	xrn1	99	72.080	Lepisosteus_oculatus
ENSTRUG00000004895	xrn1	99	76.240	ENSLAFG00000015426	XRN1	99	71.536	Loxodonta_africana
ENSTRUG00000004895	xrn1	96	75.574	ENSMFAG00000032599	XRN1	100	59.009	Macaca_fascicularis
ENSTRUG00000004895	xrn1	96	75.365	ENSMMUG00000014038	XRN1	100	59.009	Macaca_mulatta
ENSTRUG00000004895	xrn1	96	75.157	ENSMNEG00000034217	XRN1	100	58.576	Macaca_nemestrina
ENSTRUG00000004895	xrn1	72	72.299	ENSMLEG00000041349	-	99	78.414	Mandrillus_leucophaeus
ENSTRUG00000004895	xrn1	97	87.097	ENSMAMG00000013219	xrn1	92	86.882	Mastacembelus_armatus
ENSTRUG00000004895	xrn1	96	84.435	ENSMZEG00005015099	xrn1	99	72.685	Maylandia_zebra
ENSTRUG00000004895	xrn1	99	70.221	ENSMGAG00000006333	XRN1	95	68.248	Meleagris_gallopavo
ENSTRUG00000004895	xrn1	96	77.035	ENSMICG00000048948	XRN1	96	93.204	Microcebus_murinus
ENSTRUG00000004895	xrn1	96	76.972	ENSMOCG00000008665	Xrn1	99	77.476	Microtus_ochrogaster
ENSTRUG00000004895	xrn1	95	84.396	ENSMMOG00000020896	-	96	79.323	Mola_mola
ENSTRUG00000004895	xrn1	99	74.239	ENSMODG00000021236	XRN1	100	57.976	Monodelphis_domestica
ENSTRUG00000004895	xrn1	93	80.674	ENSMALG00000004098	xrn1	100	72.479	Monopterus_albus
ENSTRUG00000004895	xrn1	97	75.789	MGP_CAROLIEiJ_G0032535	Xrn1	100	90.000	Mus_caroli
ENSTRUG00000004895	xrn1	97	75.579	ENSMUSG00000032410	Xrn1	100	90.000	Mus_musculus
ENSTRUG00000004895	xrn1	97	75.949	MGP_PahariEiJ_G0015404	Xrn1	100	90.000	Mus_pahari
ENSTRUG00000004895	xrn1	97	75.579	MGP_SPRETEiJ_G0033678	Xrn1	100	90.000	Mus_spretus
ENSTRUG00000004895	xrn1	96	77.848	ENSMPUG00000012040	XRN1	100	58.871	Mustela_putorius_furo
ENSTRUG00000004895	xrn1	96	75.105	ENSMLUG00000016885	XRN1	94	69.372	Myotis_lucifugus
ENSTRUG00000004895	xrn1	96	72.436	ENSNGAG00000023964	Xrn1	99	74.121	Nannospalax_galili
ENSTRUG00000004895	xrn1	96	75.783	ENSNLEG00000004726	XRN1	100	58.820	Nomascus_leucogenys
ENSTRUG00000004895	xrn1	60	93.814	ENSMEUG00000014473	-	55	94.175	Notamacropus_eugenii
ENSTRUG00000004895	xrn1	88	68.618	ENSOPRG00000007337	-	62	66.423	Ochotona_princeps
ENSTRUG00000004895	xrn1	96	85.470	ENSONIG00000016673	xrn1	99	78.042	Oreochromis_niloticus
ENSTRUG00000004895	xrn1	90	73.991	ENSOANG00000006735	XRN1	91	66.112	Ornithorhynchus_anatinus
ENSTRUG00000004895	xrn1	96	77.944	ENSOCUG00000001861	XRN1	94	70.231	Oryctolagus_cuniculus
ENSTRUG00000004895	xrn1	96	85.563	ENSORLG00000013005	xrn1	100	71.386	Oryzias_latipes
ENSTRUG00000004895	xrn1	96	85.412	ENSORLG00020005559	xrn1	100	72.711	Oryzias_latipes_hni
ENSTRUG00000004895	xrn1	96	84.989	ENSORLG00015022523	xrn1	100	72.812	Oryzias_latipes_hsok
ENSTRUG00000004895	xrn1	96	85.169	ENSOMEG00000015397	xrn1	99	83.908	Oryzias_melastigma
ENSTRUG00000004895	xrn1	96	71.339	ENSOGAG00000000170	XRN1	100	56.037	Otolemur_garnettii
ENSTRUG00000004895	xrn1	96	75.992	ENSOARG00000006343	XRN1	94	69.237	Ovis_aries
ENSTRUG00000004895	xrn1	96	75.365	ENSPPAG00000010180	XRN1	100	59.030	Pan_paniscus
ENSTRUG00000004895	xrn1	96	77.292	ENSPPRG00000007125	XRN1	100	59.477	Panthera_pardus
ENSTRUG00000004895	xrn1	96	77.292	ENSPTIG00000021081	XRN1	100	59.419	Panthera_tigris_altaica
ENSTRUG00000004895	xrn1	96	75.365	ENSPTRG00000015482	XRN1	100	59.030	Pan_troglodytes
ENSTRUG00000004895	xrn1	96	75.365	ENSPANG00000010638	XRN1	100	59.067	Papio_anubis
ENSTRUG00000004895	xrn1	96	77.495	ENSPSIG00000018050	XRN1	94	68.612	Pelodiscus_sinensis
ENSTRUG00000004895	xrn1	96	85.991	ENSPMGG00000002648	xrn1	99	86.013	Periophthalmus_magnuspinnatus
ENSTRUG00000004895	xrn1	96	75.316	ENSPEMG00000020610	Xrn1	99	76.572	Peromyscus_maniculatus_bairdii
ENSTRUG00000004895	xrn1	99	52.022	ENSPMAG00000002975	xrn1	90	77.299	Petromyzon_marinus
ENSTRUG00000004895	xrn1	99	76.681	ENSPCIG00000028735	XRN1	99	77.008	Phascolarctos_cinereus
ENSTRUG00000004895	xrn1	97	86.229	ENSPFOG00000013932	xrn1	97	77.505	Poecilia_formosa
ENSTRUG00000004895	xrn1	97	86.780	ENSPLAG00000021653	xrn1	97	77.896	Poecilia_latipinna
ENSTRUG00000004895	xrn1	97	85.053	ENSPMEG00000003076	xrn1	95	76.746	Poecilia_mexicana
ENSTRUG00000004895	xrn1	97	84.989	ENSPREG00000021147	xrn1	96	77.312	Poecilia_reticulata
ENSTRUG00000004895	xrn1	96	75.365	ENSPPYG00000014172	XRN1	100	58.561	Pongo_abelii
ENSTRUG00000004895	xrn1	96	77.137	ENSPCAG00000005638	XRN1	92	78.755	Procavia_capensis
ENSTRUG00000004895	xrn1	99	75.101	ENSPCOG00000013089	XRN1	99	77.157	Propithecus_coquereli
ENSTRUG00000004895	xrn1	96	67.308	ENSPVAG00000016265	XRN1	74	84.682	Pteropus_vampyrus
ENSTRUG00000004895	xrn1	96	85.867	ENSPNYG00000010570	xrn1	99	73.425	Pundamilia_nyererei
ENSTRUG00000004895	xrn1	96	76.250	ENSPNAG00000023531	xrn1	100	64.180	Pygocentrus_nattereri
ENSTRUG00000004895	xrn1	96	77.399	ENSRNOG00000042951	Xrn1	94	68.685	Rattus_norvegicus
ENSTRUG00000004895	xrn1	96	75.365	ENSRBIG00000041227	XRN1	100	58.837	Rhinopithecus_bieti
ENSTRUG00000004895	xrn1	72	72.022	ENSRROG00000033764	-	100	93.204	Rhinopithecus_roxellana
ENSTRUG00000004895	xrn1	87	49.342	YGL173C	XRN1	73	52.989	Saccharomyces_cerevisiae
ENSTRUG00000004895	xrn1	96	75.574	ENSSBOG00000029561	XRN1	100	59.033	Saimiri_boliviensis_boliviensis
ENSTRUG00000004895	xrn1	99	74.239	ENSSHAG00000016207	XRN1	94	68.285	Sarcophilus_harrisii
ENSTRUG00000004895	xrn1	96	81.466	ENSSFOG00015024211	xrn1	100	65.141	Scleropages_formosus
ENSTRUG00000004895	xrn1	96	84.648	ENSSMAG00000016534	xrn1	100	79.454	Scophthalmus_maximus
ENSTRUG00000004895	xrn1	96	87.179	ENSSDUG00000010306	xrn1	97	84.327	Seriola_dumerili
ENSTRUG00000004895	xrn1	96	86.966	ENSSLDG00000021543	xrn1	100	83.596	Seriola_lalandi_dorsalis
ENSTRUG00000004895	xrn1	96	77.825	ENSSARG00000007741	-	75	66.460	Sorex_araneus
ENSTRUG00000004895	xrn1	97	76.709	ENSSPUG00000010779	-	95	76.371	Sphenodon_punctatus
ENSTRUG00000004895	xrn1	97	86.864	ENSSPAG00000009856	-	95	84.805	Stegastes_partitus
ENSTRUG00000004895	xrn1	99	75.934	ENSTGUG00000008498	XRN1	94	69.810	Taeniopygia_guttata
ENSTRUG00000004895	xrn1	96	91.202	ENSTNIG00000017615	xrn1	95	86.399	Tetraodon_nigroviridis
ENSTRUG00000004895	xrn1	84	84.140	ENSTBEG00000003256	XRN1	77	83.905	Tupaia_belangeri
ENSTRUG00000004895	xrn1	96	74.113	ENSTTRG00000012914	XRN1	86	60.872	Tursiops_truncatus
ENSTRUG00000004895	xrn1	96	73.978	ENSUAMG00000001608	XRN1	99	73.962	Ursus_americanus
ENSTRUG00000004895	xrn1	96	77.244	ENSUMAG00000013625	XRN1	94	69.904	Ursus_maritimus
ENSTRUG00000004895	xrn1	96	77.350	ENSVPAG00000004690	XRN1	100	56.494	Vicugna_pacos
ENSTRUG00000004895	xrn1	97	79.318	ENSVVUG00000024461	XRN1	99	79.443	Vulpes_vulpes
ENSTRUG00000004895	xrn1	96	77.119	ENSXETG00000000619	xrn1	100	84.156	Xenopus_tropicalis
ENSTRUG00000004895	xrn1	97	87.229	ENSXCOG00000007917	xrn1	100	72.007	Xiphophorus_couchianus
ENSTRUG00000004895	xrn1	97	85.931	ENSXMAG00000018320	xrn1	94	84.224	Xiphophorus_maculatus