EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000004959 (Gene tree)
Gene ID: 101073873
Gene Symbol: cstf3
Alias: cleavage stimulation factor|3 pre-RNA|subunit 3|wu:fa99c02|wu:fb18b09|zgc:56028
Full Name: cleavage stimulation factor subunit 3
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 8296 bases
Position: chrHE591763.1:119372-127667
Accession: 101073873
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000057197	Suf	PF05843.14	4.2e-84	1	1
ENSTRUP00000011867	Suf	PF05843.14	1e-78	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000057303	-	2408	XM_003977855	ENSTRUP00000057197	716 (aa)	XP_003977904	UPI000298C337
ENSTRUT00000011927	-	2070	-	ENSTRUP00000011867	689 (aa)	-	H2SHI5

Gene Model

Click here to download ENSTRUG00000004959's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000004959's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000004959	cstf3	100	89.833	ENSG00000176102	CSTF3	100	89.833	Homo_sapiens
ENSTRUG00000004959	cstf3	100	96.229	ENSAPOG00000014054	cstf3	100	96.229	Acanthochromis_polyacanthus
ENSTRUG00000004959	cstf3	99	90.395	ENSAMEG00000007187	CSTF3	98	90.395	Ailuropoda_melanoleuca
ENSTRUG00000004959	cstf3	90	88.622	ENSACIG00000005539	cstf3	100	91.186	Amphilophus_citrinellus
ENSTRUG00000004959	cstf3	100	96.229	ENSAOCG00000010930	cstf3	100	96.229	Amphiprion_ocellaris
ENSTRUG00000004959	cstf3	100	96.229	ENSAPEG00000007903	cstf3	100	96.229	Amphiprion_percula
ENSTRUG00000004959	cstf3	100	96.229	ENSATEG00000000190	cstf3	100	96.229	Anabas_testudineus
ENSTRUG00000004959	cstf3	99	90.395	ENSAPLG00000007217	CSTF3	100	90.395	Anas_platyrhynchos
ENSTRUG00000004959	cstf3	100	89.833	ENSACAG00000002823	CSTF3	100	89.833	Anolis_carolinensis
ENSTRUG00000004959	cstf3	100	89.833	ENSANAG00000020699	CSTF3	100	89.920	Aotus_nancymaae
ENSTRUG00000004959	cstf3	98	95.875	ENSACLG00000007820	cstf3	100	95.391	Astatotilapia_calliptera
ENSTRUG00000004959	cstf3	100	92.201	ENSAMXG00000014198	cstf3	100	92.479	Astyanax_mexicanus
ENSTRUG00000004959	cstf3	100	89.833	ENSBTAG00000008617	CSTF3	100	90.356	Bos_taurus
ENSTRUG00000004959	cstf3	99	47.724	WBGene00006307	suf-1	99	47.945	Caenorhabditis_elegans
ENSTRUG00000004959	cstf3	100	89.833	ENSCJAG00000005533	CSTF3	100	89.920	Callithrix_jacchus
ENSTRUG00000004959	cstf3	100	89.833	ENSCAFG00000007264	CSTF3	100	89.833	Canis_familiaris
ENSTRUG00000004959	cstf3	99	90.537	ENSCAFG00020002715	CSTF3	98	90.537	Canis_lupus_dingo
ENSTRUG00000004959	cstf3	98	89.189	ENSCHIG00000016418	CSTF3	100	89.920	Capra_hircus
ENSTRUG00000004959	cstf3	99	90.819	ENSTSYG00000000451	CSTF3	99	95.546	Carlito_syrichta
ENSTRUG00000004959	cstf3	86	87.678	ENSCAPG00000010958	CSTF3	98	87.678	Cavia_aperea
ENSTRUG00000004959	cstf3	100	89.833	ENSCPOG00000005545	CSTF3	100	89.833	Cavia_porcellus
ENSTRUG00000004959	cstf3	100	89.833	ENSCCAG00000024790	CSTF3	96	95.546	Cebus_capucinus
ENSTRUG00000004959	cstf3	100	89.833	ENSCATG00000007080	CSTF3	100	89.920	Cercocebus_atys
ENSTRUG00000004959	cstf3	100	89.833	ENSCLAG00000016179	CSTF3	100	89.833	Chinchilla_lanigera
ENSTRUG00000004959	cstf3	78	97.638	ENSCHOG00000002497	CSTF3	79	96.992	Choloepus_hoffmanni
ENSTRUG00000004959	cstf3	100	89.415	ENSCPBG00000006753	CSTF3	100	89.415	Chrysemys_picta_bellii
ENSTRUG00000004959	cstf3	100	60.709	ENSCING00000006401	-	99	61.581	Ciona_intestinalis
ENSTRUG00000004959	cstf3	100	60.200	ENSCSAVG00000004851	-	100	61.181	Ciona_savignyi
ENSTRUG00000004959	cstf3	100	89.833	ENSCANG00000035468	CSTF3	100	89.920	Colobus_angolensis_palliatus
ENSTRUG00000004959	cstf3	100	89.972	ENSCGRG00001014773	Cstf3	100	89.972	Cricetulus_griseus_chok1gshd
ENSTRUG00000004959	cstf3	100	89.972	ENSCGRG00000004142	Cstf3	100	89.972	Cricetulus_griseus_crigri
ENSTRUG00000004959	cstf3	100	95.391	ENSCSEG00000014283	cstf3	100	95.391	Cynoglossus_semilaevis
ENSTRUG00000004959	cstf3	100	94.832	ENSCVAG00000019739	cstf3	100	94.832	Cyprinodon_variegatus
ENSTRUG00000004959	cstf3	100	93.584	ENSDARG00000018904	cstf3	100	93.584	Danio_rerio
ENSTRUG00000004959	cstf3	99	90.395	ENSDNOG00000007366	CSTF3	99	90.395	Dasypus_novemcinctus
ENSTRUG00000004959	cstf3	99	83.216	ENSDORG00000005898	Cstf3	99	83.216	Dipodomys_ordii
ENSTRUG00000004959	cstf3	99	56.982	FBgn0003559	su(f)	98	57.500	Drosophila_melanogaster
ENSTRUG00000004959	cstf3	92	82.399	ENSETEG00000017097	CSTF3	90	84.579	Echinops_telfairi
ENSTRUG00000004959	cstf3	88	73.684	ENSEBUG00000015459	cstf3	96	73.964	Eptatretus_burgeri
ENSTRUG00000004959	cstf3	100	88.649	ENSEASG00005019884	CSTF3	96	95.546	Equus_asinus_asinus
ENSTRUG00000004959	cstf3	100	88.649	ENSECAG00000023338	CSTF3	96	95.546	Equus_caballus
ENSTRUG00000004959	cstf3	100	85.097	ENSEEUG00000015167	CSTF3	100	85.097	Erinaceus_europaeus
ENSTRUG00000004959	cstf3	100	94.003	ENSELUG00000023393	cstf3	100	94.003	Esox_lucius
ENSTRUG00000004959	cstf3	100	89.972	ENSFCAG00000030711	CSTF3	100	89.972	Felis_catus
ENSTRUG00000004959	cstf3	93	92.169	ENSFALG00000010764	CSTF3	100	89.094	Ficedula_albicollis
ENSTRUG00000004959	cstf3	100	89.972	ENSFDAG00000012082	CSTF3	100	89.972	Fukomys_damarensis
ENSTRUG00000004959	cstf3	100	94.972	ENSFHEG00000020623	cstf3	100	94.972	Fundulus_heteroclitus
ENSTRUG00000004959	cstf3	100	93.315	ENSGMOG00000012275	cstf3	100	93.315	Gadus_morhua
ENSTRUG00000004959	cstf3	100	89.276	ENSGALG00000011685	CSTF3	100	89.276	Gallus_gallus
ENSTRUG00000004959	cstf3	100	95.251	ENSGAFG00000002181	cstf3	100	95.251	Gambusia_affinis
ENSTRUG00000004959	cstf3	100	96.508	ENSGACG00000015997	cstf3	100	96.508	Gasterosteus_aculeatus
ENSTRUG00000004959	cstf3	100	89.415	ENSGAGG00000006200	CSTF3	100	89.415	Gopherus_agassizii
ENSTRUG00000004959	cstf3	99	84.887	ENSGGOG00000026591	CSTF3	96	90.646	Gorilla_gorilla
ENSTRUG00000004959	cstf3	98	95.733	ENSHBUG00000016656	cstf3	100	95.251	Haplochromis_burtoni
ENSTRUG00000004959	cstf3	100	89.694	ENSHGLG00000017834	CSTF3	100	89.694	Heterocephalus_glaber_female
ENSTRUG00000004959	cstf3	100	89.694	ENSHGLG00100018042	CSTF3	100	89.694	Heterocephalus_glaber_male
ENSTRUG00000004959	cstf3	100	92.877	ENSHCOG00000015218	cstf3	100	92.877	Hippocampus_comes
ENSTRUG00000004959	cstf3	100	91.911	ENSIPUG00000013170	CSTF3	100	91.911	Ictalurus_punctatus
ENSTRUG00000004959	cstf3	100	89.833	ENSSTOG00000013306	CSTF3	100	89.833	Ictidomys_tridecemlineatus
ENSTRUG00000004959	cstf3	99	80.532	ENSJJAG00000018430	Cstf3	99	80.532	Jaculus_jaculus
ENSTRUG00000004959	cstf3	100	94.413	ENSKMAG00000010916	cstf3	100	94.413	Kryptolebias_marmoratus
ENSTRUG00000004959	cstf3	100	96.369	ENSLBEG00000002306	cstf3	100	96.369	Labrus_bergylta
ENSTRUG00000004959	cstf3	100	89.121	ENSLACG00000017296	CSTF3	100	89.121	Latimeria_chalumnae
ENSTRUG00000004959	cstf3	100	93.175	ENSLOCG00000004415	cstf3	100	93.175	Lepisosteus_oculatus
ENSTRUG00000004959	cstf3	100	89.972	ENSLAFG00000008712	CSTF3	100	89.972	Loxodonta_africana
ENSTRUG00000004959	cstf3	100	89.833	ENSMFAG00000029516	CSTF3	100	89.920	Macaca_fascicularis
ENSTRUG00000004959	cstf3	100	89.833	ENSMMUG00000002542	CSTF3	100	89.833	Macaca_mulatta
ENSTRUG00000004959	cstf3	100	89.833	ENSMNEG00000021807	CSTF3	100	89.920	Macaca_nemestrina
ENSTRUG00000004959	cstf3	100	89.833	ENSMLEG00000039594	CSTF3	97	93.318	Mandrillus_leucophaeus
ENSTRUG00000004959	cstf3	100	95.810	ENSMAMG00000020423	cstf3	100	95.810	Mastacembelus_armatus
ENSTRUG00000004959	cstf3	98	95.875	ENSMZEG00005012082	cstf3	100	95.391	Maylandia_zebra
ENSTRUG00000004959	cstf3	100	89.415	ENSMGAG00000001383	CSTF3	100	89.415	Meleagris_gallopavo
ENSTRUG00000004959	cstf3	100	89.972	ENSMAUG00000002487	Cstf3	100	89.972	Mesocricetus_auratus
ENSTRUG00000004959	cstf3	100	89.694	ENSMICG00000004784	CSTF3	100	89.760	Microcebus_murinus
ENSTRUG00000004959	cstf3	100	89.972	ENSMOCG00000017583	Cstf3	100	89.972	Microtus_ochrogaster
ENSTRUG00000004959	cstf3	99	96.751	ENSMMOG00000016026	cstf3	95	96.751	Mola_mola
ENSTRUG00000004959	cstf3	100	90.251	ENSMODG00000009745	-	100	90.251	Monodelphis_domestica
ENSTRUG00000004959	cstf3	99	79.775	ENSMODG00000025205	-	99	79.775	Monodelphis_domestica
ENSTRUG00000004959	cstf3	100	95.950	ENSMALG00000012050	cstf3	100	95.950	Monopterus_albus
ENSTRUG00000004959	cstf3	100	89.972	MGP_CAROLIEiJ_G0024026	Cstf3	100	89.972	Mus_caroli
ENSTRUG00000004959	cstf3	100	89.972	ENSMUSG00000027176	Cstf3	100	89.972	Mus_musculus
ENSTRUG00000004959	cstf3	100	89.972	MGP_PahariEiJ_G0025464	Cstf3	100	89.972	Mus_pahari
ENSTRUG00000004959	cstf3	100	89.972	MGP_SPRETEiJ_G0024939	Cstf3	100	89.972	Mus_spretus
ENSTRUG00000004959	cstf3	100	89.694	ENSMPUG00000011457	CSTF3	100	89.694	Mustela_putorius_furo
ENSTRUG00000004959	cstf3	100	87.744	ENSMLUG00000026022	-	100	87.744	Myotis_lucifugus
ENSTRUG00000004959	cstf3	99	90.537	ENSMLUG00000003073	-	99	90.537	Myotis_lucifugus
ENSTRUG00000004959	cstf3	100	89.833	ENSNGAG00000010677	Cstf3	100	89.833	Nannospalax_galili
ENSTRUG00000004959	cstf3	90	93.098	ENSNBRG00000007345	cstf3	100	95.666	Neolamprologus_brichardi
ENSTRUG00000004959	cstf3	100	89.833	ENSNLEG00000017901	CSTF3	97	93.096	Nomascus_leucogenys
ENSTRUG00000004959	cstf3	76	89.293	ENSMEUG00000005640	-	100	89.293	Notamacropus_eugenii
ENSTRUG00000004959	cstf3	66	96.296	ENSOPRG00000000199	-	64	96.296	Ochotona_princeps
ENSTRUG00000004959	cstf3	89	78.459	ENSODEG00000006311	-	97	78.459	Octodon_degus
ENSTRUG00000004959	cstf3	100	90.111	ENSODEG00000016737	-	100	90.111	Octodon_degus
ENSTRUG00000004959	cstf3	98	95.875	ENSONIG00000005563	cstf3	100	95.391	Oreochromis_niloticus
ENSTRUG00000004959	cstf3	93	87.077	ENSOANG00000015140	CSTF3	100	89.385	Ornithorhynchus_anatinus
ENSTRUG00000004959	cstf3	100	89.833	ENSOCUG00000015417	CSTF3	100	89.833	Oryctolagus_cuniculus
ENSTRUG00000004959	cstf3	100	93.855	ENSORLG00000009762	cstf3	100	93.855	Oryzias_latipes
ENSTRUG00000004959	cstf3	100	93.855	ENSORLG00020005540	cstf3	100	93.855	Oryzias_latipes_hni
ENSTRUG00000004959	cstf3	100	93.715	ENSORLG00015003551	cstf3	100	93.715	Oryzias_latipes_hsok
ENSTRUG00000004959	cstf3	100	94.274	ENSOMEG00000003848	cstf3	100	94.274	Oryzias_melastigma
ENSTRUG00000004959	cstf3	100	89.459	ENSOGAG00000010229	CSTF3	100	89.459	Otolemur_garnettii
ENSTRUG00000004959	cstf3	90	90.047	ENSOARG00000017271	CSTF3	99	90.047	Ovis_aries
ENSTRUG00000004959	cstf3	99	87.288	ENSPPAG00000027358	CSTF3	99	87.288	Pan_paniscus
ENSTRUG00000004959	cstf3	100	89.972	ENSPPRG00000016852	CSTF3	100	89.972	Panthera_pardus
ENSTRUG00000004959	cstf3	100	89.972	ENSPTIG00000008716	CSTF3	100	89.972	Panthera_tigris_altaica
ENSTRUG00000004959	cstf3	100	89.833	ENSPTRG00000003485	CSTF3	100	89.833	Pan_troglodytes
ENSTRUG00000004959	cstf3	100	89.833	ENSPANG00000013722	CSTF3	97	93.318	Papio_anubis
ENSTRUG00000004959	cstf3	100	92.887	ENSPKIG00000023648	cstf3	100	92.887	Paramormyrops_kingsleyae
ENSTRUG00000004959	cstf3	100	89.554	ENSPSIG00000009173	CSTF3	100	89.554	Pelodiscus_sinensis
ENSTRUG00000004959	cstf3	77	97.445	ENSPMGG00000000164	cstf3	99	97.445	Periophthalmus_magnuspinnatus
ENSTRUG00000004959	cstf3	100	89.833	ENSPEMG00000011481	Cstf3	100	89.833	Peromyscus_maniculatus_bairdii
ENSTRUG00000004959	cstf3	99	78.592	ENSPMAG00000007282	cstf3	99	78.762	Petromyzon_marinus
ENSTRUG00000004959	cstf3	100	75.522	ENSPCIG00000030419	-	90	75.800	Phascolarctos_cinereus
ENSTRUG00000004959	cstf3	100	87.761	ENSPCIG00000026406	-	100	90.240	Phascolarctos_cinereus
ENSTRUG00000004959	cstf3	100	95.531	ENSPFOG00000017239	cstf3	100	95.531	Poecilia_formosa
ENSTRUG00000004959	cstf3	100	95.391	ENSPLAG00000009456	cstf3	100	95.391	Poecilia_latipinna
ENSTRUG00000004959	cstf3	100	95.531	ENSPMEG00000010320	cstf3	100	95.531	Poecilia_mexicana
ENSTRUG00000004959	cstf3	100	95.391	ENSPREG00000013549	cstf3	100	95.391	Poecilia_reticulata
ENSTRUG00000004959	cstf3	100	89.833	ENSPPYG00000003375	CSTF3	100	89.833	Pongo_abelii
ENSTRUG00000004959	cstf3	71	94.077	ENSPCAG00000008025	-	71	94.077	Procavia_capensis
ENSTRUG00000004959	cstf3	100	84.680	ENSPCOG00000014417	CSTF3	100	84.680	Propithecus_coquereli
ENSTRUG00000004959	cstf3	100	84.819	ENSPVAG00000002350	CSTF3	100	84.819	Pteropus_vampyrus
ENSTRUG00000004959	cstf3	98	95.733	ENSPNYG00000018259	cstf3	100	95.251	Pundamilia_nyererei
ENSTRUG00000004959	cstf3	100	93.863	ENSPNAG00000020182	cstf3	100	93.863	Pygocentrus_nattereri
ENSTRUG00000004959	cstf3	90	87.200	ENSRNOG00000012089	Cstf3	100	89.440	Rattus_norvegicus
ENSTRUG00000004959	cstf3	99	89.124	ENSRBIG00000044258	CSTF3	100	89.920	Rhinopithecus_bieti
ENSTRUG00000004959	cstf3	100	89.833	ENSRROG00000043450	CSTF3	100	89.920	Rhinopithecus_roxellana
ENSTRUG00000004959	cstf3	100	89.833	ENSSBOG00000024764	CSTF3	98	95.546	Saimiri_boliviensis_boliviensis
ENSTRUG00000004959	cstf3	99	90.819	ENSSHAG00000018128	-	99	90.819	Sarcophilus_harrisii
ENSTRUG00000004959	cstf3	100	80.780	ENSSHAG00000003135	-	99	80.780	Sarcophilus_harrisii
ENSTRUG00000004959	cstf3	100	92.887	ENSSFOG00015022133	cstf3	100	92.887	Scleropages_formosus
ENSTRUG00000004959	cstf3	100	95.531	ENSSMAG00000002197	cstf3	100	95.531	Scophthalmus_maximus
ENSTRUG00000004959	cstf3	100	96.508	ENSSDUG00000020426	cstf3	100	96.508	Seriola_dumerili
ENSTRUG00000004959	cstf3	100	96.508	ENSSLDG00000025649	cstf3	100	96.508	Seriola_lalandi_dorsalis
ENSTRUG00000004959	cstf3	100	89.694	ENSSARG00000000391	CSTF3	100	89.694	Sorex_araneus
ENSTRUG00000004959	cstf3	99	88.133	ENSSPUG00000010546	CSTF3	100	90.159	Sphenodon_punctatus
ENSTRUG00000004959	cstf3	100	96.369	ENSSPAG00000004958	cstf3	100	96.369	Stegastes_partitus
ENSTRUG00000004959	cstf3	99	89.930	ENSSSCG00000040954	CSTF3	99	88.671	Sus_scrofa
ENSTRUG00000004959	cstf3	99	89.972	ENSTGUG00000005010	CSTF3	100	89.972	Taeniopygia_guttata
ENSTRUG00000004959	cstf3	99	98.446	ENSTNIG00000013811	cstf3	99	98.446	Tetraodon_nigroviridis
ENSTRUG00000004959	cstf3	92	87.227	ENSTBEG00000001544	CSTF3	90	87.227	Tupaia_belangeri
ENSTRUG00000004959	cstf3	100	87.047	ENSTTRG00000016366	CSTF3	100	87.047	Tursiops_truncatus
ENSTRUG00000004959	cstf3	99	90.254	ENSUMAG00000018971	CSTF3	100	89.600	Ursus_maritimus
ENSTRUG00000004959	cstf3	100	89.694	ENSVPAG00000007800	CSTF3	100	89.694	Vicugna_pacos
ENSTRUG00000004959	cstf3	99	90.537	ENSVVUG00000014938	CSTF3	100	89.920	Vulpes_vulpes
ENSTRUG00000004959	cstf3	66	42.116	ENSXETG00000017946	-	99	42.116	Xenopus_tropicalis
ENSTRUG00000004959	cstf3	91	72.656	ENSXETG00000021399	cstf3	100	75.566	Xenopus_tropicalis
ENSTRUG00000004959	cstf3	90	93.098	ENSXCOG00000011741	cstf3	100	95.666	Xiphophorus_couchianus
ENSTRUG00000004959	cstf3	100	95.531	ENSXMAG00000009545	cstf3	100	95.531	Xiphophorus_maculatus