EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000005066 (Gene tree)
Gene ID: 101067847
Gene Symbol: -
Alias: -
Full Name: elongation factor 1-alpha-like
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 3753 bases
Position: chr12:546797-550549
Accession: 101067847
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000012156	GTP_EFTU	PF00009.27	3.4e-53	1	1
ENSTRUP00000012156	GTP_EFTU_D2	PF03144.25	4.7e-13	1	1
ENSTRUP00000012156	GTP_EFTU_D3	PF03143.17	5.1e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000012216	-	1386	XM_003968817	ENSTRUP00000012156	461 (aa)	XP_003968866	H2SIC4

Gene Model

Click here to download ENSTRUG00000005066's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000005066's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000005066	-	95	36.902	ENSTRUG00000012645	gspt1l	74	36.735
ENSTRUG00000005066	-	91	35.952	ENSTRUG00000016971	-	100	35.952
ENSTRUG00000005066	-	99	82.826	ENSTRUG00000012893	eef1a1b	98	94.186
ENSTRUG00000005066	-	96	69.820	ENSTRUG00000009006	si:dkey-37o8.1	99	69.820
ENSTRUG00000005066	-	95	41.136	ENSTRUG00000016128	hbs1l	64	42.936
ENSTRUG00000005066	-	95	30.067	ENSTRUG00000008300	tufm	87	30.067
ENSTRUG00000005066	-	98	88.470	ENSTRUG00000005727	ef-1a	99	88.043
ENSTRUG00000005066	-	99	86.768	ENSTRUG00000005416	-	99	86.768

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000005066	-	98	84.479	ENSAPOG00000004714	-	99	84.130	Acanthochromis_polyacanthus
ENSTRUG00000005066	-	89	87.591	ENSACIG00000001219	-	99	87.591	Amphilophus_citrinellus
ENSTRUG00000005066	-	99	85.217	ENSAOCG00000022039	-	99	85.217	Amphiprion_ocellaris
ENSTRUG00000005066	-	87	86.600	ENSAOCG00000022002	-	99	86.165	Amphiprion_ocellaris
ENSTRUG00000005066	-	99	85.000	ENSAPEG00000016361	-	99	85.000	Amphiprion_percula
ENSTRUG00000005066	-	98	87.140	ENSATEG00000003244	-	97	86.739	Anabas_testudineus
ENSTRUG00000005066	-	99	87.146	ENSACLG00000022560	-	99	87.146	Astatotilapia_calliptera
ENSTRUG00000005066	-	99	82.430	WBGene00001169	eef-1A.2	99	82.430	Caenorhabditis_elegans
ENSTRUG00000005066	-	99	82.430	WBGene00001168	eef-1A.1	99	82.430	Caenorhabditis_elegans
ENSTRUG00000005066	-	98	81.057	ENSCING00000018894	-	99	80.994	Ciona_intestinalis
ENSTRUG00000005066	-	99	77.849	ENSCING00000007703	-	99	77.849	Ciona_intestinalis
ENSTRUG00000005066	-	99	82.969	ENSCING00000021478	-	99	82.969	Ciona_intestinalis
ENSTRUG00000005066	-	98	79.341	ENSCING00000005126	-	99	79.526	Ciona_intestinalis
ENSTRUG00000005066	-	99	77.124	ENSCSAVG00000001085	-	91	77.124	Ciona_savignyi
ENSTRUG00000005066	-	97	79.601	ENSCSAVG00000009663	-	99	79.310	Ciona_savignyi
ENSTRUG00000005066	-	99	83.151	ENSCSAVG00000006357	-	100	93.333	Ciona_savignyi
ENSTRUG00000005066	-	97	78.022	ENSCSAVG00000003196	-	99	77.991	Ciona_savignyi
ENSTRUG00000005066	-	89	86.441	ENSCSEG00000007972	-	99	86.441	Cynoglossus_semilaevis
ENSTRUG00000005066	-	89	85.437	ENSCSEG00000007992	-	99	85.437	Cynoglossus_semilaevis
ENSTRUG00000005066	-	98	86.253	ENSCSEG00000008011	-	99	85.870	Cynoglossus_semilaevis
ENSTRUG00000005066	-	98	87.140	ENSCVAG00000019356	-	99	86.739	Cyprinodon_variegatus
ENSTRUG00000005066	-	99	83.913	FBgn0284245	eEF1alpha1	99	83.913	Drosophila_melanogaster
ENSTRUG00000005066	-	97	85.393	FBgn0000557	eEF1alpha2	99	84.165	Drosophila_melanogaster
ENSTRUG00000005066	-	99	83.696	ENSEBUG00000015814	-	100	83.696	Eptatretus_burgeri
ENSTRUG00000005066	-	99	86.985	ENSFHEG00000015054	-	99	86.985	Fundulus_heteroclitus
ENSTRUG00000005066	-	98	86.253	ENSGAFG00000014646	-	99	85.870	Gambusia_affinis
ENSTRUG00000005066	-	98	87.583	ENSGACG00000002182	-	99	87.174	Gasterosteus_aculeatus
ENSTRUG00000005066	-	99	85.870	ENSGACG00000002143	-	99	85.870	Gasterosteus_aculeatus
ENSTRUG00000005066	-	54	82.400	ENSHBUG00000017166	-	94	82.400	Haplochromis_burtoni
ENSTRUG00000005066	-	99	84.599	ENSHCOG00000008489	-	100	84.599	Hippocampus_comes
ENSTRUG00000005066	-	98	86.253	ENSHCOG00000008468	-	99	85.870	Hippocampus_comes
ENSTRUG00000005066	-	99	85.652	ENSLBEG00000002955	-	100	85.652	Labrus_bergylta
ENSTRUG00000005066	-	98	86.031	ENSLBEG00000002759	-	99	85.652	Labrus_bergylta
ENSTRUG00000005066	-	98	87.805	ENSMAMG00000007715	-	99	87.391	Mastacembelus_armatus
ENSTRUG00000005066	-	98	87.140	ENSMMOG00000001165	-	99	92.045	Mola_mola
ENSTRUG00000005066	-	99	76.535	ENSMMOG00000018160	-	99	85.870	Mola_mola
ENSTRUG00000005066	-	100	85.683	ENSMMOG00000001106	-	100	85.683	Mola_mola
ENSTRUG00000005066	-	99	76.522	ENSNBRG00000017346	-	99	76.522	Neolamprologus_brichardi
ENSTRUG00000005066	-	76	86.932	ENSONIG00000017760	-	98	86.932	Oreochromis_niloticus
ENSTRUG00000005066	-	98	86.696	ENSORLG00000007614	eef1a	99	86.304	Oryzias_latipes
ENSTRUG00000005066	-	99	87.202	ENSORLG00015002397	-	99	87.202	Oryzias_latipes_hsok
ENSTRUG00000005066	-	98	86.696	ENSOMEG00000018226	-	99	86.304	Oryzias_melastigma
ENSTRUG00000005066	-	98	86.947	ENSPMGG00000023911	-	99	95.349	Periophthalmus_magnuspinnatus
ENSTRUG00000005066	-	95	49.431	ENSPMGG00000022427	-	96	61.250	Periophthalmus_magnuspinnatus
ENSTRUG00000005066	-	98	86.253	ENSPFOG00000003924	-	99	85.870	Poecilia_formosa
ENSTRUG00000005066	-	98	86.253	ENSPLAG00000004316	-	99	85.870	Poecilia_latipinna
ENSTRUG00000005066	-	98	86.475	ENSPMEG00000001010	-	99	86.087	Poecilia_mexicana
ENSTRUG00000005066	-	99	86.985	ENSPREG00000008243	-	99	86.985	Poecilia_reticulata
ENSTRUG00000005066	-	99	87.146	ENSPNYG00000007263	-	99	87.146	Pundamilia_nyererei
ENSTRUG00000005066	-	97	79.101	YPR080W	TEF1	100	78.913	Saccharomyces_cerevisiae
ENSTRUG00000005066	-	97	79.101	YBR118W	TEF2	100	78.913	Saccharomyces_cerevisiae
ENSTRUG00000005066	-	53	81.148	ENSSMAG00000016277	-	99	80.632	Scophthalmus_maximus
ENSTRUG00000005066	-	98	77.378	ENSSMAG00000018469	-	99	77.178	Scophthalmus_maximus
ENSTRUG00000005066	-	98	87.140	ENSSDUG00000008198	-	99	86.739	Seriola_dumerili
ENSTRUG00000005066	-	98	84.479	ENSSPAG00000001710	-	99	84.130	Stegastes_partitus
ENSTRUG00000005066	-	100	84.165	ENSTNIG00000002617	-	96	84.165	Tetraodon_nigroviridis
ENSTRUG00000005066	-	98	88.027	ENSTNIG00000002619	-	99	87.609	Tetraodon_nigroviridis
ENSTRUG00000005066	-	98	86.253	ENSXCOG00000001542	-	99	94.186	Xiphophorus_couchianus