EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000005131 (Gene tree)
Gene ID: 101074742
Gene Symbol: -
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: putative regulator of nonsense transcripts 1
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 7688 bases
Position: chr20:10744692-10752379
Accession: 101074742
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000012294	UPF1_Zn_bind	PF09416.10	7.3e-75	1	1
ENSTRUP00000012294	ResIII	PF04851.15	2.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000012354	-	4079	XM_003974336	ENSTRUP00000012294	1099 (aa)	XP_003974385	H2SIR2

Gene Model

Click here to download ENSTRUG00000005131's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03013	RNA transport	KEGG
tru03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000005131's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000005131	-	100	92.091	ENSTRUG00000000150	upf1	100	92.182

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000005131	-	100	91.429	ENSG00000005007	UPF1	100	91.429	Homo_sapiens
ENSTRUG00000005131	-	100	92.301	ENSAPOG00000023773	upf1	100	92.301	Acanthochromis_polyacanthus
ENSTRUG00000005131	-	100	97.548	ENSAPOG00000010916	-	100	97.548	Acanthochromis_polyacanthus
ENSTRUG00000005131	-	100	91.030	ENSAMEG00000011474	UPF1	100	91.030	Ailuropoda_melanoleuca
ENSTRUG00000005131	-	93	97.171	ENSACIG00000010985	-	100	97.171	Amphilophus_citrinellus
ENSTRUG00000005131	-	100	92.280	ENSACIG00000019949	upf1	100	92.182	Amphilophus_citrinellus
ENSTRUG00000005131	-	100	97.366	ENSAOCG00000006352	-	100	97.366	Amphiprion_ocellaris
ENSTRUG00000005131	-	100	91.811	ENSAOCG00000018519	upf1	100	92.025	Amphiprion_ocellaris
ENSTRUG00000005131	-	100	97.275	ENSAPEG00000006292	-	100	97.275	Amphiprion_percula
ENSTRUG00000005131	-	100	91.811	ENSAPEG00000016344	upf1	100	92.025	Amphiprion_percula
ENSTRUG00000005131	-	100	90.820	ENSATEG00000017867	upf1	100	91.592	Anabas_testudineus
ENSTRUG00000005131	-	100	97.275	ENSATEG00000016606	-	100	97.275	Anabas_testudineus
ENSTRUG00000005131	-	95	92.986	ENSAPLG00000009175	UPF1	100	92.891	Anas_platyrhynchos
ENSTRUG00000005131	-	95	91.115	ENSANAG00000024107	UPF1	96	91.021	Aotus_nancymaae
ENSTRUG00000005131	-	100	96.824	ENSACLG00000022630	-	100	96.824	Astatotilapia_calliptera
ENSTRUG00000005131	-	100	92.461	ENSACLG00000007181	upf1	100	92.364	Astatotilapia_calliptera
ENSTRUG00000005131	-	100	93.835	ENSAMXG00000042187	upf1	100	92.954	Astyanax_mexicanus
ENSTRUG00000005131	-	100	90.957	ENSBTAG00000020922	UPF1	100	90.957	Bos_taurus
ENSTRUG00000005131	-	81	54.807	WBGene00004880	smg-2	99	49.269	Caenorhabditis_elegans
ENSTRUG00000005131	-	100	90.539	ENSCJAG00000019627	UPF1	100	90.539	Callithrix_jacchus
ENSTRUG00000005131	-	100	90.716	ENSCAFG00000014578	UPF1	100	90.716	Canis_familiaris
ENSTRUG00000005131	-	100	91.607	ENSCAFG00020012347	UPF1	100	91.607	Canis_lupus_dingo
ENSTRUG00000005131	-	100	91.853	ENSCHIG00000011018	UPF1	100	91.853	Capra_hircus
ENSTRUG00000005131	-	95	92.681	ENSTSYG00000008877	UPF1	98	92.586	Carlito_syrichta
ENSTRUG00000005131	-	96	91.917	ENSCAPG00000005758	UPF1	96	91.823	Cavia_aperea
ENSTRUG00000005131	-	100	91.727	ENSCPOG00000025463	UPF1	100	91.637	Cavia_porcellus
ENSTRUG00000005131	-	100	91.429	ENSCCAG00000032175	UPF1	100	91.429	Cebus_capucinus
ENSTRUG00000005131	-	94	93.123	ENSCATG00000040306	UPF1	97	93.028	Cercocebus_atys
ENSTRUG00000005131	-	95	92.966	ENSCLAG00000004037	UPF1	99	92.871	Chinchilla_lanigera
ENSTRUG00000005131	-	100	91.429	ENSCSAG00000005276	UPF1	100	91.429	Chlorocebus_sabaeus
ENSTRUG00000005131	-	100	91.839	ENSCPBG00000012513	UPF1	100	91.928	Chrysemys_picta_bellii
ENSTRUG00000005131	-	77	79.157	ENSCING00000021399	-	99	79.113	Ciona_intestinalis
ENSTRUG00000005131	-	99	73.267	ENSCSAVG00000006533	-	99	72.939	Ciona_savignyi
ENSTRUG00000005131	-	95	92.871	ENSCANG00000029819	UPF1	97	92.776	Colobus_angolensis_palliatus
ENSTRUG00000005131	-	100	91.480	ENSCGRG00001021067	Upf1	100	91.480	Cricetulus_griseus_chok1gshd
ENSTRUG00000005131	-	95	92.490	ENSCGRG00000013480	Upf1	98	92.395	Cricetulus_griseus_crigri
ENSTRUG00000005131	-	100	87.103	ENSCSEG00000017239	upf1	100	86.890	Cynoglossus_semilaevis
ENSTRUG00000005131	-	100	96.724	ENSCSEG00000016159	-	100	96.724	Cynoglossus_semilaevis
ENSTRUG00000005131	-	100	96.549	ENSCVAG00000010561	upf1	100	96.549	Cyprinodon_variegatus
ENSTRUG00000005131	-	100	93.382	ENSDARG00000016302	upf1	100	93.654	Danio_rerio
ENSTRUG00000005131	-	95	90.399	ENSDORG00000009984	Upf1	95	90.304	Dipodomys_ordii
ENSTRUG00000005131	-	86	71.324	FBgn0030354	Upf1	99	61.869	Drosophila_melanogaster
ENSTRUG00000005131	-	54	86.116	ENSEBUG00000010069	upf1	96	86.446	Eptatretus_burgeri
ENSTRUG00000005131	-	100	91.853	ENSEASG00005006549	UPF1	100	91.853	Equus_asinus_asinus
ENSTRUG00000005131	-	100	91.853	ENSECAG00000010639	UPF1	100	91.853	Equus_caballus
ENSTRUG00000005131	-	100	93.147	ENSELUG00000012916	-	100	93.868	Esox_lucius
ENSTRUG00000005131	-	100	91.606	ENSELUG00000020917	upf1	100	91.516	Esox_lucius
ENSTRUG00000005131	-	100	90.628	ENSFCAG00000009757	UPF1	100	90.628	Felis_catus
ENSTRUG00000005131	-	95	93.511	ENSFALG00000009312	UPF1	96	93.416	Ficedula_albicollis
ENSTRUG00000005131	-	95	92.871	ENSFDAG00000014816	UPF1	99	92.776	Fukomys_damarensis
ENSTRUG00000005131	-	86	96.758	ENSFHEG00000016276	-	96	96.758	Fundulus_heteroclitus
ENSTRUG00000005131	-	100	88.809	ENSFHEG00000006428	upf1	100	88.183	Fundulus_heteroclitus
ENSTRUG00000005131	-	100	93.609	ENSGMOG00000007541	upf1	100	94.065	Gadus_morhua
ENSTRUG00000005131	-	100	91.592	ENSGALG00000003220	UPF1	100	91.771	Gallus_gallus
ENSTRUG00000005131	-	100	96.815	ENSGAFG00000004831	upf1	100	96.815	Gambusia_affinis
ENSTRUG00000005131	-	63	93.804	ENSGAFG00000015443	-	85	93.804	Gambusia_affinis
ENSTRUG00000005131	-	100	92.155	ENSGAGG00000022217	UPF1	100	92.335	Gopherus_agassizii
ENSTRUG00000005131	-	95	93.852	ENSGGOG00000002608	UPF1	99	93.756	Gorilla_gorilla
ENSTRUG00000005131	-	90	89.157	ENSHBUG00000014694	upf1	100	89.157	Haplochromis_burtoni
ENSTRUG00000005131	-	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSTRUG00000005131	-	100	90.363	ENSHGLG00000010900	UPF1	100	90.363	Heterocephalus_glaber_female
ENSTRUG00000005131	-	95	91.160	ENSHGLG00100005904	UPF1	96	91.065	Heterocephalus_glaber_male
ENSTRUG00000005131	-	100	96.818	ENSHCOG00000008918	upf1	100	96.818	Hippocampus_comes
ENSTRUG00000005131	-	100	93.835	ENSIPUG00000005108	UPF1	100	94.016	Ictalurus_punctatus
ENSTRUG00000005131	-	100	91.429	ENSSTOG00000009196	UPF1	100	91.429	Ictidomys_tridecemlineatus
ENSTRUG00000005131	-	100	90.391	ENSJJAG00000023151	Upf1	100	89.876	Jaculus_jaculus
ENSTRUG00000005131	-	100	96.730	ENSKMAG00000004962	upf1	100	96.730	Kryptolebias_marmoratus
ENSTRUG00000005131	-	100	90.771	ENSLBEG00000014862	upf1	100	91.308	Labrus_bergylta
ENSTRUG00000005131	-	100	97.187	ENSLBEG00000027848	-	100	97.187	Labrus_bergylta
ENSTRUG00000005131	-	63	93.983	ENSLACG00000008482	UPF1	100	93.983	Latimeria_chalumnae
ENSTRUG00000005131	-	100	94.732	ENSLOCG00000002072	upf1	100	94.732	Lepisosteus_oculatus
ENSTRUG00000005131	-	100	90.345	ENSLAFG00000014963	UPF1	100	89.903	Loxodonta_africana
ENSTRUG00000005131	-	100	91.184	ENSMFAG00000037748	UPF1	100	91.184	Macaca_fascicularis
ENSTRUG00000005131	-	100	90.941	ENSMMUG00000023286	UPF1	100	90.941	Macaca_mulatta
ENSTRUG00000005131	-	100	91.184	ENSMNEG00000000046	UPF1	100	91.184	Macaca_nemestrina
ENSTRUG00000005131	-	95	92.871	ENSMLEG00000028404	UPF1	99	92.776	Mandrillus_leucophaeus
ENSTRUG00000005131	-	100	90.966	ENSMAMG00000006229	upf1	100	91.860	Mastacembelus_armatus
ENSTRUG00000005131	-	100	97.096	ENSMAMG00000006231	-	100	97.096	Mastacembelus_armatus
ENSTRUG00000005131	-	100	96.824	ENSMZEG00005016386	-	100	96.824	Maylandia_zebra
ENSTRUG00000005131	-	100	91.145	ENSMZEG00005003489	upf1	100	91.644	Maylandia_zebra
ENSTRUG00000005131	-	95	92.593	ENSMGAG00000004745	UPF1	100	92.498	Meleagris_gallopavo
ENSTRUG00000005131	-	95	92.490	ENSMAUG00000011398	Upf1	95	92.395	Mesocricetus_auratus
ENSTRUG00000005131	-	100	91.429	ENSMICG00000001659	UPF1	100	91.429	Microcebus_murinus
ENSTRUG00000005131	-	100	90.586	ENSMOCG00000005699	Upf1	100	90.675	Microtus_ochrogaster
ENSTRUG00000005131	-	95	95.120	ENSMMOG00000007537	-	99	95.120	Mola_mola
ENSTRUG00000005131	-	100	91.902	ENSMMOG00000007881	upf1	100	92.455	Mola_mola
ENSTRUG00000005131	-	100	90.300	ENSMODG00000003689	UPF1	100	90.388	Monodelphis_domestica
ENSTRUG00000005131	-	100	95.566	ENSMALG00000018100	-	100	95.566	Monopterus_albus
ENSTRUG00000005131	-	100	91.993	ENSMALG00000000144	upf1	100	92.175	Monopterus_albus
ENSTRUG00000005131	-	100	91.390	MGP_CAROLIEiJ_G0031142	Upf1	100	90.868	Mus_caroli
ENSTRUG00000005131	-	100	91.390	ENSMUSG00000058301	Upf1	100	90.868	Mus_musculus
ENSTRUG00000005131	-	100	91.390	MGP_PahariEiJ_G0021607	Upf1	100	90.868	Mus_pahari
ENSTRUG00000005131	-	100	91.390	MGP_SPRETEiJ_G0032260	Upf1	100	90.868	Mus_spretus
ENSTRUG00000005131	-	100	91.607	ENSMPUG00000015516	UPF1	100	91.607	Mustela_putorius_furo
ENSTRUG00000005131	-	99	91.398	ENSMLUG00000012122	UPF1	99	91.398	Myotis_lucifugus
ENSTRUG00000005131	-	100	90.080	ENSNGAG00000024107	Upf1	100	90.080	Nannospalax_galili
ENSTRUG00000005131	-	100	90.736	ENSNBRG00000000670	upf1	100	90.636	Neolamprologus_brichardi
ENSTRUG00000005131	-	100	93.263	ENSNBRG00000022069	-	100	96.117	Neolamprologus_brichardi
ENSTRUG00000005131	-	95	87.072	ENSNLEG00000006062	UPF1	99	86.977	Nomascus_leucogenys
ENSTRUG00000005131	-	83	87.476	ENSMEUG00000014146	-	83	87.280	Notamacropus_eugenii
ENSTRUG00000005131	-	95	86.840	ENSOPRG00000014018	UPF1	99	86.744	Ochotona_princeps
ENSTRUG00000005131	-	100	91.809	ENSODEG00000012426	UPF1	100	91.719	Octodon_degus
ENSTRUG00000005131	-	100	96.915	ENSONIG00000012729	-	100	96.915	Oreochromis_niloticus
ENSTRUG00000005131	-	100	91.234	ENSONIG00000010452	upf1	100	91.734	Oreochromis_niloticus
ENSTRUG00000005131	-	100	90.691	ENSOANG00000004568	UPF1	100	90.691	Ornithorhynchus_anatinus
ENSTRUG00000005131	-	100	96.276	ENSORLG00000008453	upf1	100	96.276	Oryzias_latipes
ENSTRUG00000005131	-	100	96.189	ENSORLG00020014758	upf1	100	96.189	Oryzias_latipes_hni
ENSTRUG00000005131	-	100	96.189	ENSORLG00015010165	upf1	100	96.189	Oryzias_latipes_hsok
ENSTRUG00000005131	-	100	96.549	ENSOMEG00000003665	upf1	100	96.549	Oryzias_melastigma
ENSTRUG00000005131	-	100	91.518	ENSOGAG00000012866	UPF1	100	91.518	Otolemur_garnettii
ENSTRUG00000005131	-	96	89.880	ENSOARG00000010739	UPF1	100	89.788	Ovis_aries
ENSTRUG00000005131	-	95	92.871	ENSPPAG00000043884	UPF1	96	92.776	Pan_paniscus
ENSTRUG00000005131	-	100	90.628	ENSPPRG00000023470	UPF1	100	90.628	Panthera_pardus
ENSTRUG00000005131	-	95	91.755	ENSPTIG00000010159	UPF1	99	91.659	Panthera_tigris_altaica
ENSTRUG00000005131	-	100	91.184	ENSPTRG00000010721	UPF1	100	91.184	Pan_troglodytes
ENSTRUG00000005131	-	100	91.184	ENSPANG00000008847	UPF1	100	91.184	Papio_anubis
ENSTRUG00000005131	-	92	93.602	ENSPKIG00000006069	upf1	95	95.166	Paramormyrops_kingsleyae
ENSTRUG00000005131	-	70	92.298	ENSPSIG00000009491	UPF1	100	92.167	Pelodiscus_sinensis
ENSTRUG00000005131	-	100	90.860	ENSPMGG00000017327	upf1	100	91.041	Periophthalmus_magnuspinnatus
ENSTRUG00000005131	-	100	90.586	ENSPEMG00000001085	Upf1	100	90.586	Peromyscus_maniculatus_bairdii
ENSTRUG00000005131	-	100	87.082	ENSPMAG00000001206	upf1	100	87.082	Petromyzon_marinus
ENSTRUG00000005131	-	100	91.689	ENSPCIG00000006156	UPF1	100	91.689	Phascolarctos_cinereus
ENSTRUG00000005131	-	100	90.729	ENSPLAG00000018155	-	100	90.099	Poecilia_latipinna
ENSTRUG00000005131	-	100	96.906	ENSPLAG00000016232	-	100	96.906	Poecilia_latipinna
ENSTRUG00000005131	-	100	96.818	ENSPMEG00000016319	-	100	96.818	Poecilia_mexicana
ENSTRUG00000005131	-	100	91.024	ENSPMEG00000011443	-	100	90.719	Poecilia_mexicana
ENSTRUG00000005131	-	100	96.815	ENSPREG00000011247	-	100	96.815	Poecilia_reticulata
ENSTRUG00000005131	-	100	90.925	ENSPREG00000009940	upf1	100	90.656	Poecilia_reticulata
ENSTRUG00000005131	-	100	85.664	ENSPPYG00000009752	UPF1	100	85.752	Pongo_abelii
ENSTRUG00000005131	-	75	97.980	ENSPCAG00000012962	UPF1	76	97.980	Procavia_capensis
ENSTRUG00000005131	-	100	91.200	ENSPCOG00000023813	UPF1	100	91.200	Propithecus_coquereli
ENSTRUG00000005131	-	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSTRUG00000005131	-	100	96.824	ENSPNYG00000016731	-	100	96.824	Pundamilia_nyererei
ENSTRUG00000005131	-	100	91.145	ENSPNYG00000003694	upf1	100	91.644	Pundamilia_nyererei
ENSTRUG00000005131	-	100	93.382	ENSPNAG00000025614	upf1	100	92.502	Pygocentrus_nattereri
ENSTRUG00000005131	-	100	91.390	ENSRNOG00000020134	Upf1	100	91.390	Rattus_norvegicus
ENSTRUG00000005131	-	95	90.494	ENSRBIG00000013894	UPF1	98	93.545	Rhinopithecus_bieti
ENSTRUG00000005131	-	95	92.871	ENSRROG00000040935	UPF1	98	93.545	Rhinopithecus_roxellana
ENSTRUG00000005131	-	76	55.660	YMR080C	NAM7	87	55.660	Saccharomyces_cerevisiae
ENSTRUG00000005131	-	94	93.123	ENSSBOG00000023632	UPF1	96	93.028	Saimiri_boliviensis_boliviensis
ENSTRUG00000005131	-	95	92.789	ENSSHAG00000010499	UPF1	100	92.694	Sarcophilus_harrisii
ENSTRUG00000005131	-	100	94.737	ENSSFOG00015021095	upf1	100	94.737	Scleropages_formosus
ENSTRUG00000005131	-	100	90.323	ENSSMAG00000005055	upf1	100	90.950	Scophthalmus_maximus
ENSTRUG00000005131	-	100	97.278	ENSSMAG00000021018	-	100	97.278	Scophthalmus_maximus
ENSTRUG00000005131	-	100	97.459	ENSSDUG00000009629	-	100	97.459	Seriola_dumerili
ENSTRUG00000005131	-	100	90.787	ENSSDUG00000013320	upf1	100	91.682	Seriola_dumerili
ENSTRUG00000005131	-	100	97.459	ENSSLDG00000006878	-	100	97.459	Seriola_lalandi_dorsalis
ENSTRUG00000005131	-	100	91.606	ENSSLDG00000020868	upf1	100	92.058	Seriola_lalandi_dorsalis
ENSTRUG00000005131	-	100	91.989	ENSSPUG00000010538	UPF1	100	92.169	Sphenodon_punctatus
ENSTRUG00000005131	-	100	97.000	ENSSPAG00000011521	-	100	97.000	Stegastes_partitus
ENSTRUG00000005131	-	100	89.946	ENSSPAG00000000003	upf1	100	89.900	Stegastes_partitus
ENSTRUG00000005131	-	100	91.764	ENSSSCG00000039301	UPF1	99	93.672	Sus_scrofa
ENSTRUG00000005131	-	82	86.064	ENSTGUG00000001057	UPF1	100	90.828	Taeniopygia_guttata
ENSTRUG00000005131	-	100	88.093	ENSTTRG00000011544	UPF1	100	88.004	Tursiops_truncatus
ENSTRUG00000005131	-	100	91.518	ENSUAMG00000007093	UPF1	100	91.518	Ursus_americanus
ENSTRUG00000005131	-	95	93.768	ENSUMAG00000006652	UPF1	99	94.197	Ursus_maritimus
ENSTRUG00000005131	-	100	91.607	ENSVVUG00000007797	UPF1	100	91.607	Vulpes_vulpes
ENSTRUG00000005131	-	100	78.678	ENSXETG00000013602	upf1	100	78.678	Xenopus_tropicalis
ENSTRUG00000005131	-	94	96.990	ENSXCOG00000005764	-	100	96.990	Xiphophorus_couchianus
ENSTRUG00000005131	-	97	90.772	ENSXCOG00000015275	-	96	90.602	Xiphophorus_couchianus
ENSTRUG00000005131	-	100	90.992	ENSXMAG00000001703	-	100	90.827	Xiphophorus_maculatus
ENSTRUG00000005131	-	100	96.636	ENSXMAG00000002540	-	100	96.636	Xiphophorus_maculatus