EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSTRUG00000005420 (Gene tree)
Gene ID
101067930
Gene Symbol
puf60b
Alias
fe37c05|si:ch211-12p8.2|si:zc12p8.2|wu:fb33e11|wu:fe37c05|zgc:86806
Full Name
poly(U) binding splicing factor 60
Gene Type
protein_coding
Species
Takifugu_rubripes
Status
putative
Strand
Plus strand
Length
8631 bases
Position
chr10:6659030-6667660
Accession
101067930
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSTRUP00000013014RRM_1PF00076.221.4e-4312
ENSTRUP00000013014RRM_1PF00076.221.4e-4322
ENSTRUP00000056186RRM_1PF00076.221.4e-4312
ENSTRUP00000056186RRM_1PF00076.221.4e-4322
ENSTRUP00000013013RRM_1PF00076.221.6e-4312
ENSTRUP00000013013RRM_1PF00076.221.6e-4322
ENSTRUP00000013015RRM_1PF00076.221.8e-4312
ENSTRUP00000013015RRM_1PF00076.221.8e-4322
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSTRUT00000013074-2162XM_003968107ENSTRUP00000013013540 (aa)XP_003968156H2SKS9
ENSTRUT00000013075-2111XM_011608052ENSTRUP00000013014523 (aa)XP_011606354H2SKT0
ENSTRUT00000013076-1680-ENSTRUP00000013015559 (aa)-H2SKT1
ENSTRUT00000052355-2258XM_011608048ENSTRUP00000056186527 (aa)XP_011606350UPI0005D1A1B1
Gene Model
Click here to download ENSTRUG00000005420's gene model file
Pathways
Pathway IDPathway NameSource
tru03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000005420's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSTRUG00000005420puf60b5436.275ENSTRUG00000005514u2af2a7238.235
ENSTRUG00000005420puf60b9879.648ENSTRUG00000008843-10078.599
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSTRUG00000005420puf60b10082.617ENSG00000179950PUF6010084.837Homo_sapiens
ENSTRUG00000005420puf60b10094.307ENSAPOG00000001713puf60b10095.817Acanthochromis_polyacanthus
ENSTRUG00000005420puf60b10080.935ENSAMEG00000006406PUF609482.008Ailuropoda_melanoleuca
ENSTRUG00000005420puf60b10093.928ENSACIG00000021705puf60b10096.491Amphilophus_citrinellus
ENSTRUG00000005420puf60b10075.947ENSACIG00000003263-9978.405Amphilophus_citrinellus
ENSTRUG00000005420puf60b10094.307ENSAOCG00000005395puf60b10096.881Amphiprion_ocellaris
ENSTRUG00000005420puf60b10081.818ENSAOCG00000015558-9984.291Amphiprion_ocellaris
ENSTRUG00000005420puf60b10090.631ENSAPEG00000011923puf60b10090.304Amphiprion_percula
ENSTRUG00000005420puf60b9875.828ENSAPEG00000001836-9975.915Amphiprion_percula
ENSTRUG00000005420puf60b10080.492ENSATEG00000006303-9983.077Anabas_testudineus
ENSTRUG00000005420puf60b10094.877ENSATEG00000001730puf60b10096.958Anabas_testudineus
ENSTRUG00000005420puf60b10083.178ENSAPLG00000010150PUF6010084.820Anas_platyrhynchos
ENSTRUG00000005420puf60b10082.056ENSACAG00000001645PUF609783.902Anolis_carolinensis
ENSTRUG00000005420puf60b10082.430ENSANAG00000018626PUF6010084.645Aotus_nancymaae
ENSTRUG00000005420puf60b10093.928ENSACLG00000004462puf60b10096.491Astatotilapia_calliptera
ENSTRUG00000005420puf60b10083.859ENSAMXG00000036570puf60a10084.559Astyanax_mexicanus
ENSTRUG00000005420puf60b10078.413ENSAMXG00000041030puf60b10080.266Astyanax_mexicanus
ENSTRUG00000005420puf60b10082.991ENSBTAG00000037493PUF609984.121Bos_taurus
ENSTRUG00000005420puf60b9346.400WBGene00004389rnp-68950.464Caenorhabditis_elegans
ENSTRUG00000005420puf60b10082.617ENSCJAG00000021485PUF609884.061Callithrix_jacchus
ENSTRUG00000005420puf60b10082.430ENSCAFG00000001400PUF609383.902Canis_familiaris
ENSTRUG00000005420puf60b10082.804ENSCAFG00020018754PUF609884.250Canis_lupus_dingo
ENSTRUG00000005420puf60b10082.991ENSCHIG00000001618PUF608784.470Capra_hircus
ENSTRUG00000005420puf60b10082.804ENSTSYG00000011912PUF6010085.029Carlito_syrichta
ENSTRUG00000005420puf60b10078.108ENSCPOG00000014613PUF609479.323Cavia_porcellus
ENSTRUG00000005420puf60b10082.804ENSCCAG00000007744PUF609884.250Cebus_capucinus
ENSTRUG00000005420puf60b10082.617ENSCATG00000035405PUF609884.061Cercocebus_atys
ENSTRUG00000005420puf60b10082.804ENSCLAG00000009154PUF609384.280Chinchilla_lanigera
ENSTRUG00000005420puf60b10082.617ENSCSAG00000008878PUF6010084.837Chlorocebus_sabaeus
ENSTRUG00000005420puf60b10083.178ENSCPBG00000005595PUF609884.820Chrysemys_picta_bellii
ENSTRUG00000005420puf60b6261.468ENSCING00000002156-8761.468Ciona_intestinalis
ENSTRUG00000005420puf60b9947.048ENSCING00000008436-9946.950Ciona_intestinalis
ENSTRUG00000005420puf60b9853.672ENSCSAVG00000001385-9954.159Ciona_savignyi
ENSTRUG00000005420puf60b8947.431ENSCSAVG00000004765-9747.515Ciona_savignyi
ENSTRUG00000005420puf60b8181.422ENSCANG00000041843PUF6010084.123Colobus_angolensis_palliatus
ENSTRUG00000005420puf60b10082.991ENSCGRG00001017442Puf609384.470Cricetulus_griseus_chok1gshd
ENSTRUG00000005420puf60b10082.991ENSCGRG00000003717Puf609384.470Cricetulus_griseus_crigri
ENSTRUG00000005420puf60b9975.143ENSCSEG00000014845-9773.063Cynoglossus_semilaevis
ENSTRUG00000005420puf60b10094.877ENSCSEG00000019887puf60b9397.303Cynoglossus_semilaevis
ENSTRUG00000005420puf60b9179.876ENSCVAG00000001560-9882.265Cyprinodon_variegatus
ENSTRUG00000005420puf60b10093.928ENSCVAG00000009386puf60b10096.491Cyprinodon_variegatus
ENSTRUG00000005420puf60b10085.178ENSDARG00000032175puf60a9992.340Danio_rerio
ENSTRUG00000005420puf60b10079.852ENSDARG00000001241puf60b9998.413Danio_rerio
ENSTRUG00000005420puf60b9968.371ENSDNOG00000043278PUF609070.233Dasypus_novemcinctus
ENSTRUG00000005420puf60b10082.991ENSDORG00000004585Puf609584.470Dipodomys_ordii
ENSTRUG00000005420puf60b9748.161FBgn0028577hfp9951.282Drosophila_melanogaster
ENSTRUG00000005420puf60b9861.111ENSEBUG00000014291puf60b8463.811Eptatretus_burgeri
ENSTRUG00000005420puf60b9867.245ENSEBUG00000005470-9266.979Eptatretus_burgeri
ENSTRUG00000005420puf60b10082.804ENSEASG00005009695PUF609884.250Equus_asinus_asinus
ENSTRUG00000005420puf60b10082.804ENSECAG00000024681PUF609784.250Equus_caballus
ENSTRUG00000005420puf60b10087.500ENSELUG00000006507puf60b10087.612Esox_lucius
ENSTRUG00000005420puf60b10085.366ENSELUG00000018443-10087.170Esox_lucius
ENSTRUG00000005420puf60b10082.804ENSFCAG00000001045PUF6010085.029Felis_catus
ENSTRUG00000005420puf60b10074.393ENSFALG00000001136PUF609876.281Ficedula_albicollis
ENSTRUG00000005420puf60b10082.617ENSFDAG00000017177PUF609384.280Fukomys_damarensis
ENSTRUG00000005420puf60b10094.687ENSFHEG00000020046puf60b10097.271Fundulus_heteroclitus
ENSTRUG00000005420puf60b9680.594ENSFHEG00000021687PUF6010083.817Fundulus_heteroclitus
ENSTRUG00000005420puf60b10080.639ENSGMOG00000006392puf60b10082.252Gadus_morhua
ENSTRUG00000005420puf60b6785.714ENSGALG00000039901PUF609489.213Gallus_gallus
ENSTRUG00000005420puf60b10094.877ENSGAFG00000021040puf60b10097.466Gambusia_affinis
ENSTRUG00000005420puf60b10078.828ENSGAFG00000004334-9981.520Gambusia_affinis
ENSTRUG00000005420puf60b10082.163ENSGACG00000004717puf60b9984.261Gasterosteus_aculeatus
ENSTRUG00000005420puf60b10070.833ENSGACG00000001484-10072.763Gasterosteus_aculeatus
ENSTRUG00000005420puf60b10083.178ENSGAGG00000013289PUF609284.820Gopherus_agassizii
ENSTRUG00000005420puf60b10082.617ENSGGOG00000004646PUF609884.061Gorilla_gorilla
ENSTRUG00000005420puf60b10093.928ENSHBUG00000015118puf60b10096.491Haplochromis_burtoni
ENSTRUG00000005420puf60b10081.629ENSHBUG00000009634-9983.654Haplochromis_burtoni
ENSTRUG00000005420puf60b10082.617ENSHGLG00000006111PUF609384.280Heterocephalus_glaber_female
ENSTRUG00000005420puf60b10082.617ENSHGLG00100012362PUF609384.280Heterocephalus_glaber_male
ENSTRUG00000005420puf60b9866.731ENSHCOG00000000378-9966.667Hippocampus_comes
ENSTRUG00000005420puf60b10096.053ENSHCOG00000015541puf60b10095.880Hippocampus_comes
ENSTRUG00000005420puf60b10079.705ENSIPUG00000004660puf60b9981.836Ictalurus_punctatus
ENSTRUG00000005420puf60b10083.738ENSIPUG00000002453puf60a9985.797Ictalurus_punctatus
ENSTRUG00000005420puf60b10082.804ENSSTOG00000025037PUF609484.280Ictidomys_tridecemlineatus
ENSTRUG00000005420puf60b10082.991ENSJJAG00000001076Puf609384.470Jaculus_jaculus
ENSTRUG00000005420puf60b10076.449ENSKMAG00000010106-10079.119Kryptolebias_marmoratus
ENSTRUG00000005420puf60b10094.877ENSKMAG00000016745puf60b10097.466Kryptolebias_marmoratus
ENSTRUG00000005420puf60b10095.066ENSLBEG00000012505puf60b9995.066Labrus_bergylta
ENSTRUG00000005420puf60b7276.562ENSLACG00000005456PUF609979.508Latimeria_chalumnae
ENSTRUG00000005420puf60b10085.822ENSLOCG00000010106puf60b10087.311Lepisosteus_oculatus
ENSTRUG00000005420puf60b10081.682ENSLAFG00000022929PUF609483.333Loxodonta_africana
ENSTRUG00000005420puf60b10082.617ENSMFAG00000043373PUF609983.459Macaca_fascicularis
ENSTRUG00000005420puf60b10082.617ENSMMUG00000013558PUF609884.061Macaca_mulatta
ENSTRUG00000005420puf60b10082.617ENSMNEG00000031099PUF609884.061Macaca_nemestrina
ENSTRUG00000005420puf60b10082.617ENSMLEG00000040009PUF6010084.837Mandrillus_leucophaeus
ENSTRUG00000005420puf60b10095.636ENSMAMG00000010394puf60b10095.636Mastacembelus_armatus
ENSTRUG00000005420puf60b10081.285ENSMAMG00000019476-9983.493Mastacembelus_armatus
ENSTRUG00000005420puf60b10093.928ENSMZEG00005018515puf60b10096.491Maylandia_zebra
ENSTRUG00000005420puf60b10081.629ENSMZEG00005019425-9983.654Maylandia_zebra
ENSTRUG00000005420puf60b10083.178ENSMGAG00000013070PUF609589.535Meleagris_gallopavo
ENSTRUG00000005420puf60b6986.364ENSMAUG00000014267-9088.556Mesocricetus_auratus
ENSTRUG00000005420puf60b9665.830ENSMAUG00000018549-9568.000Mesocricetus_auratus
ENSTRUG00000005420puf60b10082.804ENSMICG00000012226PUF609984.250Microcebus_murinus
ENSTRUG00000005420puf60b10082.991ENSMOCG00000018780Puf609484.470Microtus_ochrogaster
ENSTRUG00000005420puf60b10095.066ENSMMOG00000004217puf60b10097.661Mola_mola
ENSTRUG00000005420puf60b10074.383ENSMMOG00000018059-9977.294Mola_mola
ENSTRUG00000005420puf60b10082.430ENSMODG00000009161PUF609583.902Monodelphis_domestica
ENSTRUG00000005420puf60b10080.114ENSMALG00000000200-9982.500Monopterus_albus
ENSTRUG00000005420puf60b10088.615ENSMALG00000006797puf60b10088.593Monopterus_albus
ENSTRUG00000005420puf60b10083.178MGP_CAROLIEiJ_G0019910Puf609384.848Mus_caroli
ENSTRUG00000005420puf60b10083.178ENSMUSG00000002524Puf609384.848Mus_musculus
ENSTRUG00000005420puf60b10083.178MGP_PahariEiJ_G0019920Puf609384.848Mus_pahari
ENSTRUG00000005420puf60b10083.178MGP_SPRETEiJ_G0020812Puf609384.848Mus_spretus
ENSTRUG00000005420puf60b10082.617ENSMPUG00000008137PUF609384.091Mustela_putorius_furo
ENSTRUG00000005420puf60b9978.626ENSMLUG00000013032-9878.008Myotis_lucifugus
ENSTRUG00000005420puf60b10082.243ENSMLUG00000000238-9483.712Myotis_lucifugus
ENSTRUG00000005420puf60b10082.991ENSNGAG00000000712Puf6010085.221Nannospalax_galili
ENSTRUG00000005420puf60b10081.818ENSNBRG00000017223-9983.846Neolamprologus_brichardi
ENSTRUG00000005420puf60b8395.444ENSNBRG00000013047puf60b9795.444Neolamprologus_brichardi
ENSTRUG00000005420puf60b10082.617ENSNLEG00000002156PUF609884.061Nomascus_leucogenys
ENSTRUG00000005420puf60b7093.863ENSOPRG00000002147PUF607293.863Ochotona_princeps
ENSTRUG00000005420puf60b7286.441ENSODEG00000014024-9088.761Octodon_degus
ENSTRUG00000005420puf60b9861.004ENSODEG00000015513-9960.190Octodon_degus
ENSTRUG00000005420puf60b10081.439ENSONIG00000014030-9983.333Oreochromis_niloticus
ENSTRUG00000005420puf60b10093.928ENSONIG00000006247puf60b10095.636Oreochromis_niloticus
ENSTRUG00000005420puf60b9767.562ENSOANG00000006962PUF609970.117Ornithorhynchus_anatinus
ENSTRUG00000005420puf60b9980.675ENSORLG00000028655-9982.466Oryzias_latipes
ENSTRUG00000005420puf60b10094.877ENSORLG00000012279puf60b10097.466Oryzias_latipes
ENSTRUG00000005420puf60b9981.285ENSORLG00020018144-9882.917Oryzias_latipes_hni
ENSTRUG00000005420puf60b10094.877ENSORLG00020007333puf6010097.466Oryzias_latipes_hni
ENSTRUG00000005420puf60b10093.951ENSORLG00015007718puf60b10097.087Oryzias_latipes_hsok
ENSTRUG00000005420puf60b9981.096ENSORLG00015016833-9882.885Oryzias_latipes_hsok
ENSTRUG00000005420puf60b10097.343ENSOMEG00000001643puf60b10097.222Oryzias_melastigma
ENSTRUG00000005420puf60b9980.682ENSOMEG00000022185-9882.692Oryzias_melastigma
ENSTRUG00000005420puf60b10082.804ENSOGAG00000006259PUF609484.280Otolemur_garnettii
ENSTRUG00000005420puf60b10078.571ENSOARG00000016235PUF609982.231Ovis_aries
ENSTRUG00000005420puf60b10082.617ENSPPAG00000029933PUF609884.061Pan_paniscus
ENSTRUG00000005420puf60b10082.804ENSPPRG00000003257PUF6010085.029Panthera_pardus
ENSTRUG00000005420puf60b10080.561ENSPTIG00000009795PUF609981.973Panthera_tigris_altaica
ENSTRUG00000005420puf60b10082.617ENSPTRG00000043963-9884.061Pan_troglodytes
ENSTRUG00000005420puf60b10082.617ENSPTRG00000020670PUF609884.061Pan_troglodytes
ENSTRUG00000005420puf60b10082.617ENSPANG00000021936PUF609884.061Papio_anubis
ENSTRUG00000005420puf60b10087.006ENSPKIG00000004295puf60a9991.642Paramormyrops_kingsleyae
ENSTRUG00000005420puf60b10087.856ENSPKIG00000012204puf60b10090.253Paramormyrops_kingsleyae
ENSTRUG00000005420puf60b10082.617ENSPSIG00000004679PUF609984.310Pelodiscus_sinensis
ENSTRUG00000005420puf60b10093.396ENSPMGG00000013444puf60b10094.981Periophthalmus_magnuspinnatus
ENSTRUG00000005420puf60b10082.991ENSPEMG00000008820Puf609384.470Peromyscus_maniculatus_bairdii
ENSTRUG00000005420puf60b5384.663ENSPMAG00000009884puf60b10084.663Petromyzon_marinus
ENSTRUG00000005420puf60b10082.804ENSPCIG00000020270PUF609984.381Phascolarctos_cinereus
ENSTRUG00000005420puf60b10080.226ENSPFOG00000011118-9982.150Poecilia_formosa
ENSTRUG00000005420puf60b10094.877ENSPFOG00000019217puf60b9994.767Poecilia_formosa
ENSTRUG00000005420puf60b10094.877ENSPLAG00000010754puf60b10097.466Poecilia_latipinna
ENSTRUG00000005420puf60b10080.603ENSPLAG00000017025-9182.150Poecilia_latipinna
ENSTRUG00000005420puf60b10080.414ENSPMEG00000009767-9182.342Poecilia_mexicana
ENSTRUG00000005420puf60b10094.877ENSPMEG00000000838puf60b10097.466Poecilia_mexicana
ENSTRUG00000005420puf60b10097.343ENSPREG00000005440puf60b10097.222Poecilia_reticulata
ENSTRUG00000005420puf60b8179.817ENSPPYG00000018951-9582.464Pongo_abelii
ENSTRUG00000005420puf60b8181.422ENSPCAG00000014837PUF6010084.123Procavia_capensis
ENSTRUG00000005420puf60b10082.617ENSPCOG00000027981PUF609983.774Propithecus_coquereli
ENSTRUG00000005420puf60b10096.203ENSPVAG00000016167PUF608196.203Pteropus_vampyrus
ENSTRUG00000005420puf60b10093.928ENSPNYG00000002556puf60b10096.491Pundamilia_nyererei
ENSTRUG00000005420puf60b10081.629ENSPNYG00000004273-9983.654Pundamilia_nyererei
ENSTRUG00000005420puf60b9884.778ENSPNAG00000019909puf60a9985.441Pygocentrus_nattereri
ENSTRUG00000005420puf60b9979.271ENSPNAG00000019415puf60b9079.344Pygocentrus_nattereri
ENSTRUG00000005420puf60b10083.178ENSRNOG00000009960Puf609384.848Rattus_norvegicus
ENSTRUG00000005420puf60b10082.617ENSRBIG00000035274PUF609884.061Rhinopithecus_bieti
ENSTRUG00000005420puf60b10082.617ENSRROG00000029360PUF609984.061Rhinopithecus_roxellana
ENSTRUG00000005420puf60b10081.308ENSSBOG00000027089PUF609882.732Saimiri_boliviensis_boliviensis
ENSTRUG00000005420puf60b9081.988ENSSHAG00000006668PUF609083.613Sarcophilus_harrisii
ENSTRUG00000005420puf60b10080.300ENSSFOG00015019619puf60b9984.168Scleropages_formosus
ENSTRUG00000005420puf60b10083.640ENSSFOG00015019371puf60a9889.409Scleropages_formosus
ENSTRUG00000005420puf60b7598.693ENSSMAG00000016381puf60b7898.693Scophthalmus_maximus
ENSTRUG00000005420puf60b9782.031ENSSDUG00000007048-9684.554Seriola_dumerili
ENSTRUG00000005420puf60b10096.964ENSSDUG00000009935puf60b9996.998Seriola_dumerili
ENSTRUG00000005420puf60b10097.407ENSSLDG00000024011puf60b10097.407Seriola_lalandi_dorsalis
ENSTRUG00000005420puf60b10079.588ENSSLDG00000007366-9981.958Seriola_lalandi_dorsalis
ENSTRUG00000005420puf60b6674.788ENSSPUG00000013518PUF609277.876Sphenodon_punctatus
ENSTRUG00000005420puf60b10097.154ENSSPAG00000012144puf60b10097.154Stegastes_partitus
ENSTRUG00000005420puf60b10080.718ENSSPAG00000020285-10083.915Stegastes_partitus
ENSTRUG00000005420puf60b10082.804ENSSSCG00000038800PUF609881.214Sus_scrofa
ENSTRUG00000005420puf60b10080.899ENSTGUG00000012797-10082.510Taeniopygia_guttata
ENSTRUG00000005420puf60b10078.748ENSTNIG00000003069-10080.577Tetraodon_nigroviridis
ENSTRUG00000005420puf60b10096.964ENSTNIG00000013675puf60b10099.615Tetraodon_nigroviridis
ENSTRUG00000005420puf60b7762.740ENSTBEG00000001899-10066.667Tupaia_belangeri
ENSTRUG00000005420puf60b5781.639ENSTBEG00000002751-9785.567Tupaia_belangeri
ENSTRUG00000005420puf60b10080.935ENSTTRG00000017088PUF6010083.877Tursiops_truncatus
ENSTRUG00000005420puf60b10082.804ENSUAMG00000024917PUF609884.250Ursus_americanus
ENSTRUG00000005420puf60b10077.944ENSUMAG00000000272PUF609479.167Ursus_maritimus
ENSTRUG00000005420puf60b10082.804ENSVVUG00000022527PUF6010085.029Vulpes_vulpes
ENSTRUG00000005420puf60b10081.869ENSXETG00000012469puf609883.429Xenopus_tropicalis
ENSTRUG00000005420puf60b9894.706ENSXCOG00000012355puf60b10094.152Xiphophorus_couchianus
ENSTRUG00000005420puf60b9979.537ENSXMAG00000010507-9978.667Xiphophorus_maculatus
ENSTRUG00000005420puf60b10094.877ENSXMAG00000001862puf60b10097.466Xiphophorus_maculatus

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