EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000005727 (Gene tree)
Gene ID: 653026
Gene Symbol: ef-1a
Alias: -
Full Name: elongation factor 1 alpha
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 3476 bases
Position: chr12:556905-560380
Accession: 653026
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000013907	GTP_EFTU	PF00009.27	5.2e-53	1	1
ENSTRUP00000057380	GTP_EFTU	PF00009.27	5.2e-53	1	1
ENSTRUP00000013907	GTP_EFTU_D2	PF03144.25	2.1e-13	1	1
ENSTRUP00000057380	GTP_EFTU_D2	PF03144.25	2.1e-13	1	1
ENSTRUP00000013907	GTP_EFTU_D3	PF03143.17	8.6e-42	1	1
ENSTRUP00000057380	GTP_EFTU_D3	PF03143.17	8.6e-42	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000013971	-	1725	-	ENSTRUP00000013907	461 (aa)	-	H2SNC1
ENSTRUT00000052341	-	1959	-	ENSTRUP00000057380	461 (aa)	-	UPI00016E759A

Gene Model

Click here to download ENSTRUG00000005727's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000005727's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000005727	ef-1a	100	89.827	ENSTRUG00000005416	-	97	90.625
ENSTRUG00000005727	ef-1a	95	41.270	ENSTRUG00000016128	hbs1l	64	44.044
ENSTRUG00000005727	ef-1a	100	84.632	ENSTRUG00000012893	eef1a1b	94	96.512
ENSTRUG00000005727	ef-1a	91	36.667	ENSTRUG00000016971	-	100	36.667
ENSTRUG00000005727	ef-1a	99	88.043	ENSTRUG00000005066	-	98	88.470
ENSTRUG00000005727	ef-1a	96	37.923	ENSTRUG00000012645	gspt1l	74	37.923
ENSTRUG00000005727	ef-1a	95	69.932	ENSTRUG00000009006	si:dkey-37o8.1	98	69.932
ENSTRUG00000005727	ef-1a	96	30.396	ENSTRUG00000008300	tufm	87	30.176

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000005727	ef-1a	98	93.126	ENSAPOG00000004714	-	98	93.126	Acanthochromis_polyacanthus
ENSTRUG00000005727	ef-1a	90	94.915	ENSACIG00000001219	-	97	95.037	Amphilophus_citrinellus
ENSTRUG00000005727	ef-1a	100	90.672	ENSAOCG00000022039	-	98	91.131	Amphiprion_ocellaris
ENSTRUG00000005727	ef-1a	87	95.037	ENSAOCG00000022002	-	98	95.037	Amphiprion_ocellaris
ENSTRUG00000005727	ef-1a	100	91.106	ENSAPEG00000016361	-	98	91.574	Amphiprion_percula
ENSTRUG00000005727	ef-1a	98	94.235	ENSATEG00000003244	-	95	94.235	Anabas_testudineus
ENSTRUG00000005727	ef-1a	100	94.794	ENSACLG00000022560	-	98	94.900	Astatotilapia_calliptera
ENSTRUG00000005727	ef-1a	100	83.333	WBGene00001169	eef-1A.2	98	83.850	Caenorhabditis_elegans
ENSTRUG00000005727	ef-1a	100	83.333	WBGene00001168	eef-1A.1	98	83.850	Caenorhabditis_elegans
ENSTRUG00000005727	ef-1a	98	81.099	ENSCING00000005126	-	98	81.099	Ciona_intestinalis
ENSTRUG00000005727	ef-1a	99	84.498	ENSCING00000021478	-	98	85.078	Ciona_intestinalis
ENSTRUG00000005727	ef-1a	100	78.541	ENSCING00000007703	-	97	78.728	Ciona_intestinalis
ENSTRUG00000005727	ef-1a	98	81.278	ENSCING00000018894	-	97	81.278	Ciona_intestinalis
ENSTRUG00000005727	ef-1a	99	84.683	ENSCSAVG00000006357	-	96	94.000	Ciona_savignyi
ENSTRUG00000005727	ef-1a	98	79.521	ENSCSAVG00000003196	-	98	79.521	Ciona_savignyi
ENSTRUG00000005727	ef-1a	99	76.253	ENSCSAVG00000001085	-	89	77.354	Ciona_savignyi
ENSTRUG00000005727	ef-1a	98	81.319	ENSCSAVG00000009663	-	98	81.319	Ciona_savignyi
ENSTRUG00000005727	ef-1a	89	85.194	ENSCSEG00000007992	-	97	85.360	Cynoglossus_semilaevis
ENSTRUG00000005727	ef-1a	90	85.749	ENSCSEG00000007972	-	98	86.139	Cynoglossus_semilaevis
ENSTRUG00000005727	ef-1a	98	94.900	ENSCSEG00000008011	-	98	94.900	Cynoglossus_semilaevis
ENSTRUG00000005727	ef-1a	98	95.344	ENSCVAG00000019356	-	98	95.344	Cyprinodon_variegatus
ENSTRUG00000005727	ef-1a	100	87.013	FBgn0284245	eEF1alpha1	97	87.500	Drosophila_melanogaster
ENSTRUG00000005727	ef-1a	98	87.389	FBgn0000557	eEF1alpha2	98	87.389	Drosophila_melanogaster
ENSTRUG00000005727	ef-1a	99	83.478	ENSEBUG00000015814	-	98	84.035	Eptatretus_burgeri
ENSTRUG00000005727	ef-1a	98	95.344	ENSFHEG00000015054	-	98	95.344	Fundulus_heteroclitus
ENSTRUG00000005727	ef-1a	98	95.787	ENSGAFG00000014646	-	98	95.787	Gambusia_affinis
ENSTRUG00000005727	ef-1a	98	95.565	ENSGACG00000002182	-	98	95.565	Gasterosteus_aculeatus
ENSTRUG00000005727	ef-1a	100	93.059	ENSGACG00000002143	-	98	93.348	Gasterosteus_aculeatus
ENSTRUG00000005727	ef-1a	56	91.797	ENSHBUG00000017166	-	91	92.593	Haplochromis_burtoni
ENSTRUG00000005727	ef-1a	99	85.683	ENSHCOG00000008489	-	97	85.938	Hippocampus_comes
ENSTRUG00000005727	ef-1a	98	94.457	ENSHCOG00000008468	-	98	94.457	Hippocampus_comes
ENSTRUG00000005727	ef-1a	99	85.000	ENSLBEG00000002955	-	98	85.144	Labrus_bergylta
ENSTRUG00000005727	ef-1a	98	94.013	ENSLBEG00000002759	-	98	94.013	Labrus_bergylta
ENSTRUG00000005727	ef-1a	98	95.565	ENSMAMG00000007715	-	98	95.565	Mastacembelus_armatus
ENSTRUG00000005727	ef-1a	99	86.739	ENSMMOG00000001106	-	98	87.140	Mola_mola
ENSTRUG00000005727	ef-1a	99	77.632	ENSMMOG00000018160	-	95	88.043	Mola_mola
ENSTRUG00000005727	ef-1a	98	93.792	ENSMMOG00000001165	-	100	96.667	Mola_mola
ENSTRUG00000005727	ef-1a	100	83.948	ENSNBRG00000017346	-	97	83.814	Neolamprologus_brichardi
ENSTRUG00000005727	ef-1a	76	91.477	ENSONIG00000017760	-	98	91.477	Oreochromis_niloticus
ENSTRUG00000005727	ef-1a	98	94.900	ENSORLG00000007614	eef1a	98	94.900	Oryzias_latipes
ENSTRUG00000005727	ef-1a	100	93.521	ENSORLG00015002397	-	98	94.678	Oryzias_latipes_hsok
ENSTRUG00000005727	ef-1a	98	95.122	ENSOMEG00000018226	-	98	95.122	Oryzias_melastigma
ENSTRUG00000005727	ef-1a	95	48.747	ENSPMGG00000022427	-	97	60.000	Periophthalmus_magnuspinnatus
ENSTRUG00000005727	ef-1a	98	93.363	ENSPMGG00000023911	-	94	100.000	Periophthalmus_magnuspinnatus
ENSTRUG00000005727	ef-1a	98	95.565	ENSPFOG00000003924	-	98	95.285	Poecilia_formosa
ENSTRUG00000005727	ef-1a	98	95.565	ENSPLAG00000004316	-	98	95.565	Poecilia_latipinna
ENSTRUG00000005727	ef-1a	98	95.787	ENSPMEG00000001010	-	98	95.787	Poecilia_mexicana
ENSTRUG00000005727	ef-1a	100	94.156	ENSPREG00000008243	-	98	95.565	Poecilia_reticulata
ENSTRUG00000005727	ef-1a	100	94.794	ENSPNYG00000007263	-	98	94.900	Pundamilia_nyererei
ENSTRUG00000005727	ef-1a	97	80.899	YBR118W	TEF2	98	80.266	Saccharomyces_cerevisiae
ENSTRUG00000005727	ef-1a	97	80.899	YPR080W	TEF1	98	80.266	Saccharomyces_cerevisiae
ENSTRUG00000005727	ef-1a	98	82.664	ENSSMAG00000018469	-	98	82.664	Scophthalmus_maximus
ENSTRUG00000005727	ef-1a	53	92.623	ENSSMAG00000016277	-	96	92.623	Scophthalmus_maximus
ENSTRUG00000005727	ef-1a	98	93.570	ENSSDUG00000008198	-	98	93.570	Seriola_dumerili
ENSTRUG00000005727	ef-1a	98	91.796	ENSSPAG00000001710	-	98	91.796	Stegastes_partitus
ENSTRUG00000005727	ef-1a	99	83.261	ENSTNIG00000002617	-	94	84.889	Tetraodon_nigroviridis
ENSTRUG00000005727	ef-1a	100	98.048	ENSTNIG00000002619	-	100	98.048	Tetraodon_nigroviridis
ENSTRUG00000005727	ef-1a	98	95.565	ENSXCOG00000001542	-	100	97.674	Xiphophorus_couchianus