EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSTRUG00000005907 (Gene tree)
Gene ID
101067901
Gene Symbol
pabpc4
Alias
cb12|sb:cb12
Full Name
poly(A) binding protein cytoplasmic 4
Gene Type
protein_coding
Species
Takifugu_rubripes
Status
putative
Strand
Minus strand
Length
7407 bases
Position
chr2:9669897-9677303
Accession
101067901
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSTRUP00000014384PABPPF00658.187e-3111
ENSTRUP00000014386PABPPF00658.187.6e-3111
ENSTRUP00000014384RRM_5PF13893.62.5e-0911
ENSTRUP00000014386RRM_5PF13893.63.1e-0911
ENSTRUP00000014384RRM_1PF00076.221.8e-9014
ENSTRUP00000014384RRM_1PF00076.221.8e-9024
ENSTRUP00000014384RRM_1PF00076.221.8e-9034
ENSTRUP00000014384RRM_1PF00076.221.8e-9044
ENSTRUP00000014386RRM_1PF00076.222.3e-9014
ENSTRUP00000014386RRM_1PF00076.222.3e-9024
ENSTRUP00000014386RRM_1PF00076.222.3e-9034
ENSTRUP00000014386RRM_1PF00076.222.3e-9044
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSTRUT00000014452-3188XM_003962549ENSTRUP00000014386653 (aa)XP_003962598H2SPP9
ENSTRUT00000014450-3110XM_011615789ENSTRUP00000014384627 (aa)XP_011614091H2SPP7
Gene Model
Click here to download ENSTRUG00000005907's gene model file
Pathways
Pathway IDPathway NameSource
tru03013RNA transportKEGG
tru03015mRNA surveillance pathwayKEGG
tru03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000005907's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSTRUG00000005907pabpc45039.535ENSTRUG00000016905-6839.535
ENSTRUG00000005907pabpc45935.106ENSTRUG00000015362hnrnpa0b5839.437
ENSTRUG00000005907pabpc45638.889ENSTRUG00000021378-6438.889
ENSTRUG00000005907pabpc45630.968ENSTRUG00000005485rbm459430.968
ENSTRUG00000005907pabpc49875.079ENSTRUG00000011577-9974.603
ENSTRUG00000005907pabpc45537.500ENSTRUG00000010147-5038.372
ENSTRUG00000005907pabpc45836.782ENSTRUG00000005466-5036.782
ENSTRUG00000005907pabpc46033.981ENSTRUG00000008492rbms2a5333.981
ENSTRUG00000005907pabpc49566.447ENSTRUG00000011085pabpc1l9766.447
ENSTRUG00000005907pabpc49975.748ENSTRUG00000003767-9975.078
ENSTRUG00000005907pabpc46034.940ENSTRUG00000000523elavl48734.940
ENSTRUG00000005907pabpc45837.037ENSTRUG00000007296-8530.769
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSTRUG00000005907pabpc49984.135ENSG00000090621PABPC49996.396Homo_sapiens
ENSTRUG00000005907pabpc49995.146ENSAPOG00000001161pabpc410094.577Acanthochromis_polyacanthus
ENSTRUG00000005907pabpc49749.431ENSAMEG00000015083-9748.780Ailuropoda_melanoleuca
ENSTRUG00000005907pabpc49979.730ENSAMEG00000011535-10079.129Ailuropoda_melanoleuca
ENSTRUG00000005907pabpc410093.829ENSACIG00000023343pabpc410093.829Amphilophus_citrinellus
ENSTRUG00000005907pabpc49995.307ENSAOCG00000021529pabpc410094.737Amphiprion_ocellaris
ENSTRUG00000005907pabpc49995.307ENSAPEG00000019196pabpc410094.737Amphiprion_percula
ENSTRUG00000005907pabpc49995.153ENSATEG00000007402pabpc410094.745Anabas_testudineus
ENSTRUG00000005907pabpc49985.918ENSAPLG00000009729-9985.285Anas_platyrhynchos
ENSTRUG00000005907pabpc49884.492ENSACAG00000002544PABPC49983.779Anolis_carolinensis
ENSTRUG00000005907pabpc49982.003ENSANAG00000025079PABPC410082.075Aotus_nancymaae
ENSTRUG00000005907pabpc410094.577ENSACLG00000019558pabpc410094.577Astatotilapia_calliptera
ENSTRUG00000005907pabpc49985.261ENSAMXG00000018779pabpc49985.261Astyanax_mexicanus
ENSTRUG00000005907pabpc49980.923ENSBTAG00000017125PABPC410080.398Bos_taurus
ENSTRUG00000005907pabpc45883.234ENSBTAG00000048536-9583.234Bos_taurus
ENSTRUG00000005907pabpc49982.003ENSCJAG00000002512-10082.075Callithrix_jacchus
ENSTRUG00000005907pabpc47479.018ENSCJAG00000045953-8577.232Callithrix_jacchus
ENSTRUG00000005907pabpc49982.862ENSCAFG00000003081PABPC410082.233Canis_familiaris
ENSTRUG00000005907pabpc49979.880ENSCAFG00020004161PABPC410079.279Canis_lupus_dingo
ENSTRUG00000005907pabpc49965.785ENSCHIG00000023385-10065.319Capra_hircus
ENSTRUG00000005907pabpc49979.129ENSCHIG00000019398-10078.593Capra_hircus
ENSTRUG00000005907pabpc49982.704ENSTSYG00000006532PABPC410082.075Carlito_syrichta
ENSTRUG00000005907pabpc49982.504ENSCAPG00000015984PABPC410081.862Cavia_aperea
ENSTRUG00000005907pabpc49982.316ENSCPOG00000009552PABPC410082.233Cavia_porcellus
ENSTRUG00000005907pabpc49982.003ENSCCAG00000037306PABPC410082.075Cebus_capucinus
ENSTRUG00000005907pabpc49982.003ENSCATG00000042164PABPC410082.075Cercocebus_atys
ENSTRUG00000005907pabpc49982.316ENSCLAG00000011899PABPC410081.918Chinchilla_lanigera
ENSTRUG00000005907pabpc49979.279ENSCSAG00000001135PABPC410078.743Chlorocebus_sabaeus
ENSTRUG00000005907pabpc48688.947ENSCHOG00000005327PABPC47989.488Choloepus_hoffmanni
ENSTRUG00000005907pabpc49986.392ENSCPBG00000001038PABPC49985.759Chrysemys_picta_bellii
ENSTRUG00000005907pabpc49882.222ENSCANG00000034177PABPC410082.297Colobus_angolensis_palliatus
ENSTRUG00000005907pabpc49884.390ENSCGRG00001018166Pabpc410083.121Cricetulus_griseus_chok1gshd
ENSTRUG00000005907pabpc49784.653ENSCGRG00000009777Pabpc410083.360Cricetulus_griseus_crigri
ENSTRUG00000005907pabpc410094.737ENSCSEG00000000130pabpc410094.737Cynoglossus_semilaevis
ENSTRUG00000005907pabpc49994.968ENSCVAG00000019246pabpc410094.968Cyprinodon_variegatus
ENSTRUG00000005907pabpc49891.547ENSDARG00000059259pabpc410091.405Danio_rerio
ENSTRUG00000005907pabpc49881.162ENSDNOG00000018444-10080.885Dasypus_novemcinctus
ENSTRUG00000005907pabpc49981.356ENSDORG00000011581Pabpc410080.740Dipodomys_ordii
ENSTRUG00000005907pabpc48553.578ENSETEG00000009172-9952.087Echinops_telfairi
ENSTRUG00000005907pabpc49990.625ENSETEG00000018453-8490.625Echinops_telfairi
ENSTRUG00000005907pabpc49876.555ENSEBUG00000000992pabpc49976.236Eptatretus_burgeri
ENSTRUG00000005907pabpc49677.398ENSEBUG00000013782pabpc49977.229Eptatretus_burgeri
ENSTRUG00000005907pabpc49979.279ENSEASG00005014119PABPC410078.743Equus_asinus_asinus
ENSTRUG00000005907pabpc49979.279ENSECAG00000009396PABPC410078.743Equus_caballus
ENSTRUG00000005907pabpc49778.407ENSEEUG00000002962PABPC410077.395Erinaceus_europaeus
ENSTRUG00000005907pabpc49891.720ENSELUG00000003195pabpc410090.923Esox_lucius
ENSTRUG00000005907pabpc49982.862ENSFCAG00000015254-10082.233Felis_catus
ENSTRUG00000005907pabpc49985.759ENSFALG00000000543PABPC49985.127Ficedula_albicollis
ENSTRUG00000005907pabpc48950.840ENSFDAG00000010581-9949.060Fukomys_damarensis
ENSTRUG00000005907pabpc49979.429ENSFDAG00000020016-10079.010Fukomys_damarensis
ENSTRUG00000005907pabpc49994.249ENSFHEG00000007548pabpc410094.249Fundulus_heteroclitus
ENSTRUG00000005907pabpc410089.969ENSGMOG00000019025pabpc410089.969Gadus_morhua
ENSTRUG00000005907pabpc49985.918ENSGALG00000003800PABPC49985.285Gallus_gallus
ENSTRUG00000005907pabpc49997.129ENSGAFG00000018195pabpc410097.129Gambusia_affinis
ENSTRUG00000005907pabpc410092.663ENSGACG00000007179pabpc410092.663Gasterosteus_aculeatus
ENSTRUG00000005907pabpc49986.551ENSGAGG00000001888PABPC49985.918Gopherus_agassizii
ENSTRUG00000005907pabpc49982.003ENSGGOG00000004002PABPC410082.075Gorilla_gorilla
ENSTRUG00000005907pabpc410094.418ENSHBUG00000020206pabpc410094.418Haplochromis_burtoni
ENSTRUG00000005907pabpc49982.160ENSHGLG00000011162PABPC410082.075Heterocephalus_glaber_female
ENSTRUG00000005907pabpc49982.160ENSHGLG00100001580PABPC410082.075Heterocephalus_glaber_male
ENSTRUG00000005907pabpc410093.142ENSHCOG00000012694pabpc410094.099Hippocampus_comes
ENSTRUG00000005907pabpc49790.806ENSIPUG00000016620pabpc410090.424Ictalurus_punctatus
ENSTRUG00000005907pabpc49983.974ENSSTOG00000010416PABPC410083.333Ictidomys_tridecemlineatus
ENSTRUG00000005907pabpc49980.401ENSJJAG00000007781Pabpc410079.448Jaculus_jaculus
ENSTRUG00000005907pabpc410093.949ENSKMAG00000013597pabpc410093.949Kryptolebias_marmoratus
ENSTRUG00000005907pabpc49993.968ENSLBEG00000013654pabpc410093.968Labrus_bergylta
ENSTRUG00000005907pabpc49986.572ENSLACG00000011907PABPC49986.098Latimeria_chalumnae
ENSTRUG00000005907pabpc49989.764ENSLOCG00000001877pabpc410089.764Lepisosteus_oculatus
ENSTRUG00000005907pabpc49984.135ENSLAFG00000000151PABPC410083.494Loxodonta_africana
ENSTRUG00000005907pabpc49982.003ENSMFAG00000041481PABPC410082.075Macaca_fascicularis
ENSTRUG00000005907pabpc49979.279ENSMMUG00000007497PABPC410078.743Macaca_mulatta
ENSTRUG00000005907pabpc49982.003ENSMNEG00000043054PABPC410081.918Macaca_nemestrina
ENSTRUG00000005907pabpc49982.003ENSMLEG00000040716PABPC410082.075Mandrillus_leucophaeus
ENSTRUG00000005907pabpc49995.955ENSMAMG00000010025pabpc410095.534Mastacembelus_armatus
ENSTRUG00000005907pabpc410094.418ENSMZEG00005006141pabpc410094.418Maylandia_zebra
ENSTRUG00000005907pabpc49883.871ENSMGAG00000005408PABPC49983.192Meleagris_gallopavo
ENSTRUG00000005907pabpc47789.583ENSMAUG00000019763-8485.321Mesocricetus_auratus
ENSTRUG00000005907pabpc45880.117ENSMAUG00000004089-9680.117Mesocricetus_auratus
ENSTRUG00000005907pabpc47278.571ENSMAUG00000001295-9777.619Mesocricetus_auratus
ENSTRUG00000005907pabpc49874.101ENSMICG00000036729-10072.842Microcebus_murinus
ENSTRUG00000005907pabpc48883.604ENSMICG00000016633-10083.423Microcebus_murinus
ENSTRUG00000005907pabpc410083.016ENSMOCG00000006763Pabpc410082.484Microtus_ochrogaster
ENSTRUG00000005907pabpc410092.026ENSMMOG00000002363pabpc410091.707Mola_mola
ENSTRUG00000005907pabpc46070.933ENSMODG00000018051-9670.933Monodelphis_domestica
ENSTRUG00000005907pabpc49784.129ENSMODG00000017657-9982.979Monodelphis_domestica
ENSTRUG00000005907pabpc49995.161ENSMALG00000011017pabpc410094.754Monopterus_albus
ENSTRUG00000005907pabpc49978.529MGP_CAROLIEiJ_G0026435-10096.454Mus_caroli
ENSTRUG00000005907pabpc49871.429MGP_CAROLIEiJ_G0024864-10072.056Mus_caroli
ENSTRUG00000005907pabpc49983.494ENSMUSG00000011257Pabpc410094.643Mus_musculus
ENSTRUG00000005907pabpc49879.300MGP_PahariEiJ_G0028765Pabpc410097.163Mus_pahari
ENSTRUG00000005907pabpc49870.588MGP_SPRETEiJ_G0027415Pabpc410097.163Mus_spretus
ENSTRUG00000005907pabpc49546.318ENSMPUG00000006836-10045.964Mustela_putorius_furo
ENSTRUG00000005907pabpc49979.491ENSMPUG00000014414-10078.892Mustela_putorius_furo
ENSTRUG00000005907pabpc49983.974ENSMLUG00000012068PABPC410083.333Myotis_lucifugus
ENSTRUG00000005907pabpc49984.135ENSNGAG00000018292Pabpc410083.494Nannospalax_galili
ENSTRUG00000005907pabpc46099.038ENSNBRG00000009708pabpc49899.038Neolamprologus_brichardi
ENSTRUG00000005907pabpc46596.988ENSNBRG00000010047-7296.988Neolamprologus_brichardi
ENSTRUG00000005907pabpc49982.003ENSNLEG00000011928PABPC410082.075Nomascus_leucogenys
ENSTRUG00000005907pabpc48592.063ENSOPRG00000011984PABPC48692.063Ochotona_princeps
ENSTRUG00000005907pabpc49982.003ENSODEG00000006592-10081.604Octodon_degus
ENSTRUG00000005907pabpc49872.199ENSODEG00000017434-10071.608Octodon_degus
ENSTRUG00000005907pabpc45382.857ENSODEG00000013457-10082.857Octodon_degus
ENSTRUG00000005907pabpc410094.418ENSONIG00000008176pabpc410094.418Oreochromis_niloticus
ENSTRUG00000005907pabpc49986.076ENSOANG00000010001PABPC49985.443Ornithorhynchus_anatinus
ENSTRUG00000005907pabpc49579.781ENSOCUG00000000562PABPC48879.219Oryctolagus_cuniculus
ENSTRUG00000005907pabpc49995.370ENSORLG00000017479pabpc49995.370Oryzias_latipes
ENSTRUG00000005907pabpc49995.370ENSORLG00020018644pabpc410095.370Oryzias_latipes_hni
ENSTRUG00000005907pabpc49995.370ENSORLG00015015042pabpc410095.370Oryzias_latipes_hsok
ENSTRUG00000005907pabpc49994.013ENSOMEG00000014410pabpc49993.301Oryzias_melastigma
ENSTRUG00000005907pabpc49980.828ENSOGAG00000004067PABPC410080.428Otolemur_garnettii
ENSTRUG00000005907pabpc49979.129ENSOARG00000020060PABPC410078.593Ovis_aries
ENSTRUG00000005907pabpc49982.003ENSPPAG00000043625PABPC410082.075Pan_paniscus
ENSTRUG00000005907pabpc49982.862ENSPPRG00000024727PABPC410082.233Panthera_pardus
ENSTRUG00000005907pabpc49982.862ENSPTIG00000005829PABPC410082.233Panthera_tigris_altaica
ENSTRUG00000005907pabpc49982.003ENSPTRG00000000573PABPC410082.075Pan_troglodytes
ENSTRUG00000005907pabpc49982.003ENSPANG00000009484PABPC410082.075Papio_anubis
ENSTRUG00000005907pabpc49990.409ENSPKIG00000025356pabpc49990.409Paramormyrops_kingsleyae
ENSTRUG00000005907pabpc49986.867ENSPSIG00000016892PABPC49986.234Pelodiscus_sinensis
ENSTRUG00000005907pabpc410090.431ENSPMGG00000009073pabpc410089.633Periophthalmus_magnuspinnatus
ENSTRUG00000005907pabpc49979.937ENSPEMG00000024193-9979.310Peromyscus_maniculatus_bairdii
ENSTRUG00000005907pabpc49982.031ENSPEMG00000023569-10081.947Peromyscus_maniculatus_bairdii
ENSTRUG00000005907pabpc49574.160ENSPMAG00000007885pabpc49973.868Petromyzon_marinus
ENSTRUG00000005907pabpc48875.087ENSPMAG00000002836pabpc410076.307Petromyzon_marinus
ENSTRUG00000005907pabpc49786.517ENSPCIG00000020674PABPC410094.417Phascolarctos_cinereus
ENSTRUG00000005907pabpc49993.610ENSPFOG00000002682pabpc410093.610Poecilia_formosa
ENSTRUG00000005907pabpc49993.770ENSPLAG00000010112pabpc410093.770Poecilia_latipinna
ENSTRUG00000005907pabpc49894.643ENSPMEG00000019739pabpc410093.610Poecilia_mexicana
ENSTRUG00000005907pabpc49993.930ENSPREG00000001589pabpc410093.930Poecilia_reticulata
ENSTRUG00000005907pabpc49979.279ENSPPYG00000001506PABPC410078.743Pongo_abelii
ENSTRUG00000005907pabpc49974.474ENSPCAG00000003341PABPC410073.952Procavia_capensis
ENSTRUG00000005907pabpc49867.133ENSPCOG00000025882-9580.198Propithecus_coquereli
ENSTRUG00000005907pabpc49981.875ENSPCOG00000023725-10081.947Propithecus_coquereli
ENSTRUG00000005907pabpc49878.109ENSPVAG00000002187PABPC410077.446Pteropus_vampyrus
ENSTRUG00000005907pabpc410094.577ENSPNYG00000006134pabpc410094.577Pundamilia_nyererei
ENSTRUG00000005907pabpc49991.759ENSPNAG00000024355pabpc410091.759Pygocentrus_nattereri
ENSTRUG00000005907pabpc49981.048ENSRNOG00000015642Pabpc410080.431Rattus_norvegicus
ENSTRUG00000005907pabpc49978.891ENSRNOG00000028592AABR07035074.110078.274Rattus_norvegicus
ENSTRUG00000005907pabpc49982.003ENSRBIG00000039761PABPC410082.075Rhinopithecus_bieti
ENSTRUG00000005907pabpc49982.003ENSRROG00000033355PABPC410082.075Rhinopithecus_roxellana
ENSTRUG00000005907pabpc49982.003ENSSBOG00000026193PABPC410082.075Saimiri_boliviensis_boliviensis
ENSTRUG00000005907pabpc49786.517ENSSHAG00000018139PABPC49985.285Sarcophilus_harrisii
ENSTRUG00000005907pabpc49989.869ENSSFOG00015023514pabpc410089.869Scleropages_formosus
ENSTRUG00000005907pabpc410094.258ENSSMAG00000009007pabpc410094.258Scophthalmus_maximus
ENSTRUG00000005907pabpc49995.631ENSSDUG00000012683pabpc410095.215Seriola_dumerili
ENSTRUG00000005907pabpc49995.631ENSSLDG00000013025pabpc410095.215Seriola_lalandi_dorsalis
ENSTRUG00000005907pabpc49972.823ENSSARG00000000310PABPC410072.305Sorex_araneus
ENSTRUG00000005907pabpc49986.741ENSSPUG00000003204PABPC49986.102Sphenodon_punctatus
ENSTRUG00000005907pabpc49995.469ENSSPAG00000009252pabpc410094.737Stegastes_partitus
ENSTRUG00000005907pabpc48843.540ENSSSCG00000036170-9643.540Sus_scrofa
ENSTRUG00000005907pabpc49982.316ENSSSCG00000003660-10082.075Sus_scrofa
ENSTRUG00000005907pabpc49981.722ENSTGUG00000001266PABPC49982.353Taeniopygia_guttata
ENSTRUG00000005907pabpc410091.069ENSTNIG00000016902pabpc410090.590Tetraodon_nigroviridis
ENSTRUG00000005907pabpc49868.220ENSTBEG00000009035PABPC410068.220Tupaia_belangeri
ENSTRUG00000005907pabpc49861.553ENSTTRG00000014340PABPC410066.667Tursiops_truncatus
ENSTRUG00000005907pabpc49982.862ENSUAMG00000000303PABPC410082.233Ursus_americanus
ENSTRUG00000005907pabpc49881.593ENSUMAG00000019585PABPC49991.325Ursus_maritimus
ENSTRUG00000005907pabpc47870.206ENSVPAG00000010041PABPC47370.206Vicugna_pacos
ENSTRUG00000005907pabpc49982.862ENSVVUG00000005215PABPC410082.233Vulpes_vulpes
ENSTRUG00000005907pabpc46296.429ENSXETG00000027221-10096.429Xenopus_tropicalis
ENSTRUG00000005907pabpc410082.188ENSXETG00000010946pabpc410081.562Xenopus_tropicalis
ENSTRUG00000005907pabpc49996.306ENSXCOG00000013190pabpc49694.811Xiphophorus_couchianus
ENSTRUG00000005907pabpc49993.930ENSXMAG00000019007pabpc410093.930Xiphophorus_maculatus

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