EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000006005 (Gene tree)
Gene ID: 101073441
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 9005 bases
Position: chr5:6915905-6924909
Accession: 101073441
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000014609	MMR_HSR1	PF01926.23	1.4e-08	1	1
ENSTRUP00000014610	MMR_HSR1	PF01926.23	1.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000014677	-	1980	XM_003964642	ENSTRUP00000014609	482 (aa)	XP_003964691	H2SQC2
ENSTRUT00000014678	-	1944	XM_003964641	ENSTRUP00000014610	470 (aa)	XP_003964690	H2SQC3

Gene Model

Click here to download ENSTRUG00000006005's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000006005's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000006005	srl	79	33.512	ENSTRUG00000014338	ehd3	73	32.840
ENSTRUG00000006005	srl	84	32.405	ENSTRUG00000022398	ehd4	70	32.405
ENSTRUG00000006005	srl	83	31.250	ENSTRUG00000025890	ehd1a	70	32.216
ENSTRUG00000006005	srl	76	35.556	ENSTRUG00000010128	ehd2b	65	35.556
ENSTRUG00000006005	srl	89	78.520	ENSTRUG00000013310	SRL	55	78.520

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000006005	srl	96	81.596	ENSG00000185739	SRL	99	83.256	Homo_sapiens
ENSTRUG00000006005	srl	100	96.603	ENSAPOG00000018093	srl	100	96.603	Acanthochromis_polyacanthus
ENSTRUG00000006005	srl	94	77.878	ENSAPOG00000012432	SRL	99	77.878	Acanthochromis_polyacanthus
ENSTRUG00000006005	srl	97	81.223	ENSAMEG00000010862	SRL	52	81.223	Ailuropoda_melanoleuca
ENSTRUG00000006005	srl	96	97.333	ENSACIG00000015799	srl	99	97.333	Amphilophus_citrinellus
ENSTRUG00000006005	srl	95	75.446	ENSACIG00000015419	SRL	99	75.446	Amphilophus_citrinellus
ENSTRUG00000006005	srl	97	76.087	ENSAOCG00000017049	SRL	100	76.304	Amphiprion_ocellaris
ENSTRUG00000006005	srl	92	97.235	ENSAOCG00000007574	srl	100	97.235	Amphiprion_ocellaris
ENSTRUG00000006005	srl	100	96.815	ENSAPEG00000006911	srl	100	96.815	Amphiprion_percula
ENSTRUG00000006005	srl	97	72.767	ENSAPEG00000006533	SRL	100	73.261	Amphiprion_percula
ENSTRUG00000006005	srl	95	75.488	ENSATEG00000009643	SRL	52	76.316	Anabas_testudineus
ENSTRUG00000006005	srl	100	96.178	ENSATEG00000024315	srl	100	96.178	Anabas_testudineus
ENSTRUG00000006005	srl	100	80.943	ENSACAG00000016380	SRL	89	80.943	Anolis_carolinensis
ENSTRUG00000006005	srl	96	73.866	ENSACLG00000024674	SRL	58	73.866	Astatotilapia_calliptera
ENSTRUG00000006005	srl	100	95.754	ENSACLG00000027685	srl	100	95.754	Astatotilapia_calliptera
ENSTRUG00000006005	srl	93	74.887	ENSAMXG00000038693	SRL	100	74.614	Astyanax_mexicanus
ENSTRUG00000006005	srl	100	90.871	ENSAMXG00000018789	srl	92	90.871	Astyanax_mexicanus
ENSTRUG00000006005	srl	96	82.119	ENSBTAG00000001078	SRL	57	82.119	Bos_taurus
ENSTRUG00000006005	srl	94	83.032	ENSCJAG00000019750	SRL	100	80.338	Callithrix_jacchus
ENSTRUG00000006005	srl	98	81.046	ENSCAFG00000019233	SRL	85	81.223	Canis_familiaris
ENSTRUG00000006005	srl	97	81.360	ENSCAFG00020025024	SRL	56	81.360	Canis_lupus_dingo
ENSTRUG00000006005	srl	97	81.878	ENSCHIG00000017927	SRL	57	82.119	Capra_hircus
ENSTRUG00000006005	srl	100	80.127	ENSTSYG00000007919	SRL	99	83.721	Carlito_syrichta
ENSTRUG00000006005	srl	97	81.498	ENSCPOG00000012643	SRL	100	80.508	Cavia_porcellus
ENSTRUG00000006005	srl	94	77.602	ENSCCAG00000032646	SRL	100	84.169	Cebus_capucinus
ENSTRUG00000006005	srl	96	81.596	ENSCATG00000032227	-	100	80.338	Cercocebus_atys
ENSTRUG00000006005	srl	97	82.159	ENSCLAG00000016242	SRL	100	81.144	Chinchilla_lanigera
ENSTRUG00000006005	srl	82	85.974	ENSCHOG00000001618	SRL	52	85.974	Choloepus_hoffmanni
ENSTRUG00000006005	srl	96	86.788	ENSCPBG00000026371	SRL	99	81.781	Chrysemys_picta_bellii
ENSTRUG00000006005	srl	91	60.047	ENSCING00000005231	-	95	60.047	Ciona_intestinalis
ENSTRUG00000006005	srl	96	81.596	ENSCANG00000035872	SRL	99	83.256	Colobus_angolensis_palliatus
ENSTRUG00000006005	srl	97	82.379	ENSCGRG00001016630	Srl	100	81.144	Cricetulus_griseus_chok1gshd
ENSTRUG00000006005	srl	97	82.379	ENSCGRG00000005458	Srl	100	81.144	Cricetulus_griseus_crigri
ENSTRUG00000006005	srl	99	72.591	ENSCSEG00000011866	SRL	94	72.805	Cynoglossus_semilaevis
ENSTRUG00000006005	srl	100	95.957	ENSCSEG00000016151	srl	100	95.957	Cynoglossus_semilaevis
ENSTRUG00000006005	srl	97	75.214	ENSCVAG00000022465	SRL	62	75.214	Cyprinodon_variegatus
ENSTRUG00000006005	srl	100	94.255	ENSCVAG00000003513	srl	100	94.255	Cyprinodon_variegatus
ENSTRUG00000006005	srl	100	89.627	ENSDARG00000104587	srl	100	89.627	Danio_rerio
ENSTRUG00000006005	srl	81	78.125	ENSDARG00000112959	CABZ01072309.1	100	78.125	Danio_rerio
ENSTRUG00000006005	srl	95	82.000	ENSDNOG00000011643	SRL	54	81.319	Dasypus_novemcinctus
ENSTRUG00000006005	srl	97	82.379	ENSDORG00000014807	Srl	100	81.144	Dipodomys_ordii
ENSTRUG00000006005	srl	79	65.775	ENSEBUG00000015937	srl	94	65.775	Eptatretus_burgeri
ENSTRUG00000006005	srl	96	82.667	ENSEASG00005000942	SRL	55	82.340	Equus_asinus_asinus
ENSTRUG00000006005	srl	99	81.356	ENSECAG00000024219	SRL	99	81.356	Equus_caballus
ENSTRUG00000006005	srl	100	86.448	ENSELUG00000015616	srl	100	86.448	Esox_lucius
ENSTRUG00000006005	srl	100	80.127	ENSFCAG00000022075	SRL	100	80.338	Felis_catus
ENSTRUG00000006005	srl	94	83.258	ENSFALG00000004328	SRL	63	83.258	Ficedula_albicollis
ENSTRUG00000006005	srl	97	82.198	ENSFDAG00000006199	SRL	100	81.568	Fukomys_damarensis
ENSTRUG00000006005	srl	100	94.468	ENSFHEG00000011239	srl	100	94.468	Fundulus_heteroclitus
ENSTRUG00000006005	srl	100	73.347	ENSFHEG00000011854	SRL	99	77.027	Fundulus_heteroclitus
ENSTRUG00000006005	srl	94	91.630	ENSGMOG00000014954	srl	100	91.630	Gadus_morhua
ENSTRUG00000006005	srl	99	80.679	ENSGALG00000038884	SRL	99	80.679	Gallus_gallus
ENSTRUG00000006005	srl	100	94.681	ENSGAFG00000000010	srl	100	94.681	Gambusia_affinis
ENSTRUG00000006005	srl	96	77.506	ENSGAFG00000016984	SRL	100	77.506	Gambusia_affinis
ENSTRUG00000006005	srl	94	96.044	ENSGACG00000011332	srl	100	96.044	Gasterosteus_aculeatus
ENSTRUG00000006005	srl	96	81.596	ENSGGOG00000011312	-	100	80.127	Gorilla_gorilla
ENSTRUG00000006005	srl	96	73.978	ENSHBUG00000015710	SRL	58	73.978	Haplochromis_burtoni
ENSTRUG00000006005	srl	100	95.754	ENSHBUG00000007581	srl	100	95.754	Haplochromis_burtoni
ENSTRUG00000006005	srl	97	82.159	ENSHGLG00000015271	SRL	100	81.144	Heterocephalus_glaber_female
ENSTRUG00000006005	srl	97	82.159	ENSHGLG00100019378	SRL	100	81.144	Heterocephalus_glaber_male
ENSTRUG00000006005	srl	94	74.725	ENSHCOG00000001012	SRL	50	74.725	Hippocampus_comes
ENSTRUG00000006005	srl	100	95.127	ENSHCOG00000008687	srl	99	96.429	Hippocampus_comes
ENSTRUG00000006005	srl	93	69.725	ENSIPUG00000011609	SRL	95	69.725	Ictalurus_punctatus
ENSTRUG00000006005	srl	100	90.269	ENSIPUG00000012513	srl	100	90.269	Ictalurus_punctatus
ENSTRUG00000006005	srl	97	81.718	ENSSTOG00000021151	-	100	80.720	Ictidomys_tridecemlineatus
ENSTRUG00000006005	srl	100	81.780	ENSJJAG00000016400	Srl	100	81.780	Jaculus_jaculus
ENSTRUG00000006005	srl	98	94.565	ENSKMAG00000014115	srl	95	94.565	Kryptolebias_marmoratus
ENSTRUG00000006005	srl	94	76.871	ENSKMAG00000019537	SRL	100	76.871	Kryptolebias_marmoratus
ENSTRUG00000006005	srl	100	95.329	ENSLBEG00000026643	srl	100	95.329	Labrus_bergylta
ENSTRUG00000006005	srl	97	74.074	ENSLBEG00000013811	SRL	99	74.292	Labrus_bergylta
ENSTRUG00000006005	srl	100	82.816	ENSLACG00000002825	SRL	98	85.973	Latimeria_chalumnae
ENSTRUG00000006005	srl	99	86.724	ENSLOCG00000002644	srl	99	86.724	Lepisosteus_oculatus
ENSTRUG00000006005	srl	97	80.525	ENSLAFG00000006329	SRL	52	80.525	Loxodonta_africana
ENSTRUG00000006005	srl	91	83.256	ENSMFAG00000037383	SRL	99	83.256	Macaca_fascicularis
ENSTRUG00000006005	srl	97	81.004	ENSMNEG00000019236	-	97	81.004	Macaca_nemestrina
ENSTRUG00000006005	srl	96	74.723	ENSMLEG00000032156	SRL	100	73.784	Mandrillus_leucophaeus
ENSTRUG00000006005	srl	94	75.439	ENSMAMG00000013756	SRL	53	75.439	Mastacembelus_armatus
ENSTRUG00000006005	srl	94	96.396	ENSMAMG00000023322	srl	99	93.576	Mastacembelus_armatus
ENSTRUG00000006005	srl	100	95.754	ENSMZEG00005004548	srl	100	95.754	Maylandia_zebra
ENSTRUG00000006005	srl	96	73.763	ENSMZEG00005004010	SRL	58	73.763	Maylandia_zebra
ENSTRUG00000006005	srl	96	81.718	ENSMGAG00000009342	SRL	96	84.433	Meleagris_gallopavo
ENSTRUG00000006005	srl	94	83.484	ENSMICG00000032307	SRL	100	80.761	Microcebus_murinus
ENSTRUG00000006005	srl	100	80.297	ENSMOCG00000008208	Srl	100	80.297	Microtus_ochrogaster
ENSTRUG00000006005	srl	94	74.505	ENSMMOG00000021572	SRL	99	74.505	Mola_mola
ENSTRUG00000006005	srl	96	97.111	ENSMMOG00000013970	srl	100	97.111	Mola_mola
ENSTRUG00000006005	srl	96	82.889	ENSMODG00000016380	-	51	82.889	Monodelphis_domestica
ENSTRUG00000006005	srl	89	77.327	ENSMALG00000000670	SRL	98	77.327	Monopterus_albus
ENSTRUG00000006005	srl	100	95.106	ENSMALG00000005039	srl	100	95.106	Monopterus_albus
ENSTRUG00000006005	srl	97	83.040	MGP_CAROLIEiJ_G0020400	Srl	100	82.203	Mus_caroli
ENSTRUG00000006005	srl	97	83.040	ENSMUSG00000022519	Srl	100	82.203	Mus_musculus
ENSTRUG00000006005	srl	97	83.040	MGP_SPRETEiJ_G0021294	Srl	100	82.203	Mus_spretus
ENSTRUG00000006005	srl	96	82.040	ENSMPUG00000015025	SRL	55	82.040	Mustela_putorius_furo
ENSTRUG00000006005	srl	96	82.743	ENSMLUG00000030733	SRL	57	82.743	Myotis_lucifugus
ENSTRUG00000006005	srl	97	82.819	ENSNGAG00000019741	Srl	100	81.780	Nannospalax_galili
ENSTRUG00000006005	srl	96	73.763	ENSNBRG00000002422	SRL	56	75.926	Neolamprologus_brichardi
ENSTRUG00000006005	srl	100	95.754	ENSNBRG00000023775	srl	100	95.754	Neolamprologus_brichardi
ENSTRUG00000006005	srl	96	76.053	ENSNLEG00000029051	SRL	100	74.207	Nomascus_leucogenys
ENSTRUG00000006005	srl	97	75.109	ENSOPRG00000000477	-	54	75.109	Ochotona_princeps
ENSTRUG00000006005	srl	97	82.159	ENSODEG00000013256	SRL	100	80.932	Octodon_degus
ENSTRUG00000006005	srl	100	95.652	ENSONIG00000005192	srl	100	95.652	Oreochromis_niloticus
ENSTRUG00000006005	srl	100	95.106	ENSORLG00000008291	srl	97	95.106	Oryzias_latipes
ENSTRUG00000006005	srl	94	75.395	ENSORLG00000015064	SRL	97	75.395	Oryzias_latipes
ENSTRUG00000006005	srl	94	75.621	ENSORLG00020018173	SRL	97	75.621	Oryzias_latipes_hni
ENSTRUG00000006005	srl	100	95.532	ENSORLG00020019784	srl	85	95.532	Oryzias_latipes_hni
ENSTRUG00000006005	srl	100	95.106	ENSORLG00015009342	srl	97	95.106	Oryzias_latipes_hsok
ENSTRUG00000006005	srl	94	75.621	ENSORLG00015019063	SRL	97	75.621	Oryzias_latipes_hsok
ENSTRUG00000006005	srl	94	74.123	ENSOMEG00000005682	SRL	53	74.398	Oryzias_melastigma
ENSTRUG00000006005	srl	100	95.319	ENSOMEG00000010006	srl	100	95.319	Oryzias_melastigma
ENSTRUG00000006005	srl	97	81.498	ENSOGAG00000029266	SRL	55	81.498	Otolemur_garnettii
ENSTRUG00000006005	srl	97	81.878	ENSOARG00000003074	SRL	57	81.878	Ovis_aries
ENSTRUG00000006005	srl	96	81.596	ENSPPAG00000024919	-	99	83.256	Pan_paniscus
ENSTRUG00000006005	srl	100	80.127	ENSPPRG00000010274	SRL	98	84.834	Panthera_pardus
ENSTRUG00000006005	srl	100	80.127	ENSPTIG00000015162	SRL	98	84.834	Panthera_tigris_altaica
ENSTRUG00000006005	srl	96	81.596	ENSPTRG00000007712	SRL	99	83.256	Pan_troglodytes
ENSTRUG00000006005	srl	97	81.441	ENSPANG00000013804	SRL	98	81.441	Papio_anubis
ENSTRUG00000006005	srl	100	90.275	ENSPKIG00000006405	srl	100	90.275	Paramormyrops_kingsleyae
ENSTRUG00000006005	srl	100	78.344	ENSPKIG00000024974	SRL	94	78.344	Paramormyrops_kingsleyae
ENSTRUG00000006005	srl	94	75.964	ENSPMGG00000023505	-	99	75.964	Periophthalmus_magnuspinnatus
ENSTRUG00000006005	srl	97	93.231	ENSPMGG00000021081	srl	99	93.231	Periophthalmus_magnuspinnatus
ENSTRUG00000006005	srl	97	82.379	ENSPEMG00000015842	Srl	100	81.356	Peromyscus_maniculatus_bairdii
ENSTRUG00000006005	srl	90	68.879	ENSPMAG00000004786	srl	99	68.879	Petromyzon_marinus
ENSTRUG00000006005	srl	96	83.111	ENSPCIG00000012128	SRL	98	83.111	Phascolarctos_cinereus
ENSTRUG00000006005	srl	100	94.813	ENSPFOG00000011408	srl	97	93.067	Poecilia_formosa
ENSTRUG00000006005	srl	96	76.169	ENSPLAG00000002932	SRL	100	76.169	Poecilia_latipinna
ENSTRUG00000006005	srl	97	94.105	ENSPLAG00000008017	srl	99	94.105	Poecilia_latipinna
ENSTRUG00000006005	srl	100	94.894	ENSPMEG00000006745	srl	99	94.105	Poecilia_mexicana
ENSTRUG00000006005	srl	97	74.573	ENSPMEG00000005890	SRL	61	74.145	Poecilia_mexicana
ENSTRUG00000006005	srl	96	77.283	ENSPREG00000000315	SRL	100	77.283	Poecilia_reticulata
ENSTRUG00000006005	srl	100	94.468	ENSPREG00000007751	srl	100	94.900	Poecilia_reticulata
ENSTRUG00000006005	srl	89	84.487	ENSPPYG00000007053	SRL	98	84.487	Pongo_abelii
ENSTRUG00000006005	srl	94	82.766	ENSPCAG00000003378	-	50	82.766	Procavia_capensis
ENSTRUG00000006005	srl	94	83.032	ENSPCOG00000023135	SRL	99	83.488	Propithecus_coquereli
ENSTRUG00000006005	srl	96	82.040	ENSPVAG00000006586	SRL	56	82.080	Pteropus_vampyrus
ENSTRUG00000006005	srl	100	95.754	ENSPNYG00000001200	srl	100	95.754	Pundamilia_nyererei
ENSTRUG00000006005	srl	96	73.763	ENSPNYG00000003423	SRL	58	73.763	Pundamilia_nyererei
ENSTRUG00000006005	srl	100	90.456	ENSPNAG00000023106	srl	100	90.456	Pygocentrus_nattereri
ENSTRUG00000006005	srl	94	76.644	ENSPNAG00000007361	-	91	76.644	Pygocentrus_nattereri
ENSTRUG00000006005	srl	97	82.096	ENSRNOG00000005269	Srl	51	82.096	Rattus_norvegicus
ENSTRUG00000006005	srl	97	80.568	ENSRBIG00000042358	SRL	51	80.568	Rhinopithecus_bieti
ENSTRUG00000006005	srl	94	83.032	ENSSBOG00000029273	SRL	100	80.338	Saimiri_boliviensis_boliviensis
ENSTRUG00000006005	srl	97	81.978	ENSSHAG00000011715	-	51	81.978	Sarcophilus_harrisii
ENSTRUG00000006005	srl	94	77.703	ENSSFOG00015021327	SRL	50	77.232	Scleropages_formosus
ENSTRUG00000006005	srl	100	90.083	ENSSFOG00015009773	srl	100	90.083	Scleropages_formosus
ENSTRUG00000006005	srl	94	74.505	ENSSMAG00000002232	SRL	50	74.505	Scophthalmus_maximus
ENSTRUG00000006005	srl	100	95.117	ENSSMAG00000016274	srl	100	95.117	Scophthalmus_maximus
ENSTRUG00000006005	srl	94	96.171	ENSSDUG00000010808	srl	98	96.171	Seriola_dumerili
ENSTRUG00000006005	srl	94	77.283	ENSSDUG00000009161	SRL	98	77.283	Seriola_dumerili
ENSTRUG00000006005	srl	94	77.024	ENSSLDG00000014601	SRL	99	77.582	Seriola_lalandi_dorsalis
ENSTRUG00000006005	srl	100	95.319	ENSSLDG00000022024	srl	100	95.319	Seriola_lalandi_dorsalis
ENSTRUG00000006005	srl	96	82.444	ENSSPUG00000016859	SRL	99	82.444	Sphenodon_punctatus
ENSTRUG00000006005	srl	94	79.007	ENSSPAG00000014254	SRL	99	79.007	Stegastes_partitus
ENSTRUG00000006005	srl	100	96.398	ENSSPAG00000019105	srl	100	96.398	Stegastes_partitus
ENSTRUG00000006005	srl	96	81.898	ENSSSCG00000007949	SRL	99	83.070	Sus_scrofa
ENSTRUG00000006005	srl	94	83.484	ENSTGUG00000003951	-	97	83.484	Taeniopygia_guttata
ENSTRUG00000006005	srl	77	86.464	ENSTGUG00000016121	-	100	86.464	Taeniopygia_guttata
ENSTRUG00000006005	srl	100	98.723	ENSTNIG00000009739	srl	100	98.723	Tetraodon_nigroviridis
ENSTRUG00000006005	srl	94	82.883	ENSUAMG00000005701	SRL	55	82.883	Ursus_americanus
ENSTRUG00000006005	srl	94	82.883	ENSUMAG00000002574	SRL	55	82.883	Ursus_maritimus
ENSTRUG00000006005	srl	97	81.498	ENSVVUG00000016331	-	50	81.498	Vulpes_vulpes
ENSTRUG00000006005	srl	99	79.274	ENSXETG00000017313	srl	98	82.393	Xenopus_tropicalis
ENSTRUG00000006005	srl	90	95.487	ENSXCOG00000010424	srl	97	95.487	Xiphophorus_couchianus
ENSTRUG00000006005	srl	96	77.162	ENSXCOG00000014584	SRL	100	77.162	Xiphophorus_couchianus
ENSTRUG00000006005	srl	97	74.786	ENSXMAG00000027598	SRL	64	74.786	Xiphophorus_maculatus
ENSTRUG00000006005	srl	100	94.255	ENSXMAG00000004625	srl	95	94.255	Xiphophorus_maculatus