EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000006118 (Gene tree)
Gene ID: 101064274
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 5591 bases
Position: chr21:508693-514283
Accession: 101064274
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000014866	PRP21_like_P	PF12230.8	4.5e-51	1	1
ENSTRUP00000014866	Surp	PF01805.20	5e-46	1	2
ENSTRUP00000014866	Surp	PF01805.20	5e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000014934	-	3177	XM_003974453	ENSTRUP00000014866	780 (aa)	XP_003974502	H2SR29

Gene Model

Click here to download ENSTRUG00000006118's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000006118's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000006118	sf3a1	97	83.137	ENSG00000099995	SF3A1	100	81.761	Homo_sapiens
ENSTRUG00000006118	sf3a1	100	90.076	ENSAPOG00000020465	sf3a1	100	90.204	Acanthochromis_polyacanthus
ENSTRUG00000006118	sf3a1	97	82.092	ENSAMEG00000007737	SF3A1	100	81.054	Ailuropoda_melanoleuca
ENSTRUG00000006118	sf3a1	100	89.313	ENSACIG00000020672	sf3a1	100	89.313	Amphilophus_citrinellus
ENSTRUG00000006118	sf3a1	100	90.076	ENSAOCG00000003060	sf3a1	100	90.204	Amphiprion_ocellaris
ENSTRUG00000006118	sf3a1	100	90.076	ENSAPEG00000010735	sf3a1	100	90.204	Amphiprion_percula
ENSTRUG00000006118	sf3a1	97	89.542	ENSATEG00000021201	sf3a1	96	89.542	Anabas_testudineus
ENSTRUG00000006118	sf3a1	96	81.926	ENSAPLG00000009057	SF3A1	100	81.818	Anas_platyrhynchos
ENSTRUG00000006118	sf3a1	100	78.589	ENSACAG00000009415	SF3A1	100	79.110	Anolis_carolinensis
ENSTRUG00000006118	sf3a1	97	82.222	ENSANAG00000032045	SF3A1	100	81.509	Aotus_nancymaae
ENSTRUG00000006118	sf3a1	100	87.771	ENSACLG00000012622	sf3a1	100	89.682	Astatotilapia_calliptera
ENSTRUG00000006118	sf3a1	99	84.459	ENSAMXG00000005382	sf3a1	99	86.752	Astyanax_mexicanus
ENSTRUG00000006118	sf3a1	97	82.092	ENSBTAG00000003390	SF3A1	100	81.258	Bos_taurus
ENSTRUG00000006118	sf3a1	79	45.809	WBGene00004188	prp-21	98	42.784	Caenorhabditis_elegans
ENSTRUG00000006118	sf3a1	97	82.353	ENSCJAG00000010370	SF3A1	100	81.635	Callithrix_jacchus
ENSTRUG00000006118	sf3a1	97	82.092	ENSCAFG00000012559	SF3A1	100	81.258	Canis_familiaris
ENSTRUG00000006118	sf3a1	97	82.092	ENSCAFG00020000838	SF3A1	100	81.258	Canis_lupus_dingo
ENSTRUG00000006118	sf3a1	97	82.222	ENSCHIG00000018642	SF3A1	100	81.384	Capra_hircus
ENSTRUG00000006118	sf3a1	97	82.092	ENSTSYG00000004739	SF3A1	100	81.384	Carlito_syrichta
ENSTRUG00000006118	sf3a1	96	65.252	ENSCAPG00000015414	SF3A1	97	66.129	Cavia_aperea
ENSTRUG00000006118	sf3a1	97	82.745	ENSCPOG00000014589	SF3A1	100	81.258	Cavia_porcellus
ENSTRUG00000006118	sf3a1	97	82.222	ENSCCAG00000032006	SF3A1	100	81.509	Cebus_capucinus
ENSTRUG00000006118	sf3a1	97	82.484	ENSCATG00000029241	SF3A1	100	81.635	Cercocebus_atys
ENSTRUG00000006118	sf3a1	97	82.092	ENSCLAG00000006508	SF3A1	100	81.509	Chinchilla_lanigera
ENSTRUG00000006118	sf3a1	97	82.484	ENSCSAG00000009470	SF3A1	100	81.635	Chlorocebus_sabaeus
ENSTRUG00000006118	sf3a1	57	90.076	ENSCHOG00000005201	SF3A1	64	91.985	Choloepus_hoffmanni
ENSTRUG00000006118	sf3a1	100	80.177	ENSCPBG00000007595	SF3A1	100	81.566	Chrysemys_picta_bellii
ENSTRUG00000006118	sf3a1	99	51.955	ENSCING00000008526	-	98	51.069	Ciona_intestinalis
ENSTRUG00000006118	sf3a1	97	50.643	ENSCSAVG00000005608	-	100	61.538	Ciona_savignyi
ENSTRUG00000006118	sf3a1	97	82.484	ENSCANG00000033564	SF3A1	100	81.635	Colobus_angolensis_palliatus
ENSTRUG00000006118	sf3a1	97	82.368	ENSCGRG00001008933	Sf3a1	100	81.384	Cricetulus_griseus_chok1gshd
ENSTRUG00000006118	sf3a1	97	82.368	ENSCGRG00000006127	Sf3a1	100	81.384	Cricetulus_griseus_crigri
ENSTRUG00000006118	sf3a1	100	88.056	ENSCSEG00000010792	sf3a1	100	89.454	Cynoglossus_semilaevis
ENSTRUG00000006118	sf3a1	100	88.153	ENSCVAG00000004560	sf3a1	100	88.153	Cyprinodon_variegatus
ENSTRUG00000006118	sf3a1	100	84.244	ENSDARG00000041887	sf3a1	100	89.714	Danio_rerio
ENSTRUG00000006118	sf3a1	97	82.637	ENSDNOG00000010629	SF3A1	98	82.038	Dasypus_novemcinctus
ENSTRUG00000006118	sf3a1	97	82.745	ENSDORG00000005613	Sf3a1	100	81.258	Dipodomys_ordii
ENSTRUG00000006118	sf3a1	85	59.963	FBgn0266917	Sf3a1	85	58.633	Drosophila_melanogaster
ENSTRUG00000006118	sf3a1	85	79.136	ENSETEG00000017194	SF3A1	100	78.805	Echinops_telfairi
ENSTRUG00000006118	sf3a1	97	66.248	ENSEBUG00000001285	sf3a1	76	68.621	Eptatretus_burgeri
ENSTRUG00000006118	sf3a1	97	82.222	ENSEASG00005010254	SF3A1	100	81.635	Equus_asinus_asinus
ENSTRUG00000006118	sf3a1	97	82.222	ENSECAG00000023962	SF3A1	100	81.635	Equus_caballus
ENSTRUG00000006118	sf3a1	74	91.803	ENSEEUG00000003159	SF3A1	83	91.803	Erinaceus_europaeus
ENSTRUG00000006118	sf3a1	100	84.010	ENSELUG00000022578	sf3a1	82	84.640	Esox_lucius
ENSTRUG00000006118	sf3a1	97	82.222	ENSFCAG00000011932	SF3A1	100	81.384	Felis_catus
ENSTRUG00000006118	sf3a1	96	81.242	ENSFALG00000006944	SF3A1	100	80.076	Ficedula_albicollis
ENSTRUG00000006118	sf3a1	97	82.222	ENSFDAG00000009560	SF3A1	100	81.509	Fukomys_damarensis
ENSTRUG00000006118	sf3a1	100	88.564	ENSFHEG00000010866	sf3a1	100	89.454	Fundulus_heteroclitus
ENSTRUG00000006118	sf3a1	100	85.332	ENSGMOG00000016024	sf3a1	100	86.607	Gadus_morhua
ENSTRUG00000006118	sf3a1	96	82.034	ENSGALG00000007937	SF3A1	100	81.337	Gallus_gallus
ENSTRUG00000006118	sf3a1	100	89.172	ENSGAFG00000009111	sf3a1	100	89.172	Gambusia_affinis
ENSTRUG00000006118	sf3a1	100	87.579	ENSGACG00000011893	sf3a1	100	88.340	Gasterosteus_aculeatus
ENSTRUG00000006118	sf3a1	96	79.842	ENSGAGG00000000762	SF3A1	99	81.028	Gopherus_agassizii
ENSTRUG00000006118	sf3a1	97	83.137	ENSGGOG00000012631	SF3A1	100	81.761	Gorilla_gorilla
ENSTRUG00000006118	sf3a1	100	88.790	ENSHBUG00000015795	sf3a1	100	89.809	Haplochromis_burtoni
ENSTRUG00000006118	sf3a1	97	82.222	ENSHGLG00000007907	SF3A1	100	81.509	Heterocephalus_glaber_female
ENSTRUG00000006118	sf3a1	97	82.222	ENSHGLG00100013799	SF3A1	100	81.509	Heterocephalus_glaber_male
ENSTRUG00000006118	sf3a1	100	87.229	ENSHCOG00000015423	sf3a1	100	87.229	Hippocampus_comes
ENSTRUG00000006118	sf3a1	97	83.594	ENSIPUG00000002470	sf3a1	98	85.286	Ictalurus_punctatus
ENSTRUG00000006118	sf3a1	97	82.222	ENSSTOG00000013892	SF3A1	100	81.384	Ictidomys_tridecemlineatus
ENSTRUG00000006118	sf3a1	97	82.222	ENSJJAG00000022566	Sf3a1	100	81.156	Jaculus_jaculus
ENSTRUG00000006118	sf3a1	100	87.277	ENSKMAG00000002400	sf3a1	100	88.168	Kryptolebias_marmoratus
ENSTRUG00000006118	sf3a1	100	89.272	ENSLBEG00000022974	sf3a1	100	89.400	Labrus_bergylta
ENSTRUG00000006118	sf3a1	100	81.091	ENSLACG00000003565	SF3A1	100	80.862	Latimeria_chalumnae
ENSTRUG00000006118	sf3a1	100	82.911	ENSLOCG00000008251	sf3a1	99	85.063	Lepisosteus_oculatus
ENSTRUG00000006118	sf3a1	99	53.450	ENSLAFG00000026032	-	97	53.230	Loxodonta_africana
ENSTRUG00000006118	sf3a1	97	82.484	ENSLAFG00000000448	SF3A1	100	81.635	Loxodonta_africana
ENSTRUG00000006118	sf3a1	97	82.353	ENSMFAG00000031979	SF3A1	100	81.509	Macaca_fascicularis
ENSTRUG00000006118	sf3a1	97	82.353	ENSMMUG00000005547	SF3A1	100	81.509	Macaca_mulatta
ENSTRUG00000006118	sf3a1	97	82.222	ENSMNEG00000037229	SF3A1	100	81.384	Macaca_nemestrina
ENSTRUG00000006118	sf3a1	97	82.484	ENSMLEG00000041908	SF3A1	100	81.635	Mandrillus_leucophaeus
ENSTRUG00000006118	sf3a1	98	89.494	ENSMAMG00000006460	sf3a1	96	89.494	Mastacembelus_armatus
ENSTRUG00000006118	sf3a1	100	87.771	ENSMZEG00005009633	sf3a1	100	89.682	Maylandia_zebra
ENSTRUG00000006118	sf3a1	96	81.770	ENSMGAG00000001330	SF3A1	100	82.111	Meleagris_gallopavo
ENSTRUG00000006118	sf3a1	93	78.065	ENSMAUG00000020317	Sf3a1	100	75.570	Mesocricetus_auratus
ENSTRUG00000006118	sf3a1	97	82.461	ENSMICG00000010038	SF3A1	100	81.612	Microcebus_murinus
ENSTRUG00000006118	sf3a1	97	82.092	ENSMOCG00000008438	Sf3a1	100	81.533	Microtus_ochrogaster
ENSTRUG00000006118	sf3a1	100	87.852	ENSMMOG00000015588	sf3a1	99	88.235	Mola_mola
ENSTRUG00000006118	sf3a1	99	81.008	ENSMODG00000009270	SF3A1	100	81.360	Monodelphis_domestica
ENSTRUG00000006118	sf3a1	100	87.690	ENSMALG00000000148	sf3a1	100	88.861	Monopterus_albus
ENSTRUG00000006118	sf3a1	97	82.368	MGP_CAROLIEiJ_G0016029	Sf3a1	99	81.313	Mus_caroli
ENSTRUG00000006118	sf3a1	97	82.368	ENSMUSG00000002129	Sf3a1	99	81.313	Mus_musculus
ENSTRUG00000006118	sf3a1	97	82.500	MGP_PahariEiJ_G0016862	Sf3a1	99	79.774	Mus_pahari
ENSTRUG00000006118	sf3a1	97	82.368	MGP_SPRETEiJ_G0016870	Sf3a1	99	81.313	Mus_spretus
ENSTRUG00000006118	sf3a1	97	82.222	ENSMPUG00000013144	SF3A1	100	81.384	Mustela_putorius_furo
ENSTRUG00000006118	sf3a1	97	82.222	ENSMLUG00000002139	SF3A1	100	81.384	Myotis_lucifugus
ENSTRUG00000006118	sf3a1	98	82.300	ENSNGAG00000016977	Sf3a1	100	81.635	Nannospalax_galili
ENSTRUG00000006118	sf3a1	100	88.437	ENSNBRG00000016642	sf3a1	100	89.454	Neolamprologus_brichardi
ENSTRUG00000006118	sf3a1	97	82.484	ENSNLEG00000003686	SF3A1	100	81.635	Nomascus_leucogenys
ENSTRUG00000006118	sf3a1	94	73.954	ENSMEUG00000008741	SF3A1	100	73.062	Notamacropus_eugenii
ENSTRUG00000006118	sf3a1	97	82.353	ENSOPRG00000016636	SF3A1	100	81.533	Ochotona_princeps
ENSTRUG00000006118	sf3a1	99	81.395	ENSODEG00000002571	SF3A1	100	81.360	Octodon_degus
ENSTRUG00000006118	sf3a1	100	89.682	ENSONIG00000010848	sf3a1	100	89.809	Oreochromis_niloticus
ENSTRUG00000006118	sf3a1	98	81.242	ENSOCUG00000007633	SF3A1	100	81.006	Oryctolagus_cuniculus
ENSTRUG00000006118	sf3a1	96	87.101	ENSORLG00000013050	sf3a1	99	88.298	Oryzias_latipes
ENSTRUG00000006118	sf3a1	99	84.744	ENSORLG00020003236	sf3a1	95	88.298	Oryzias_latipes_hni
ENSTRUG00000006118	sf3a1	100	87.134	ENSORLG00015017411	sf3a1	100	88.280	Oryzias_latipes_hsok
ENSTRUG00000006118	sf3a1	100	88.153	ENSOMEG00000013362	sf3a1	100	88.790	Oryzias_melastigma
ENSTRUG00000006118	sf3a1	97	82.353	ENSOGAG00000012931	SF3A1	100	81.384	Otolemur_garnettii
ENSTRUG00000006118	sf3a1	97	81.046	ENSOARG00000006849	SF3A1	100	78.994	Ovis_aries
ENSTRUG00000006118	sf3a1	97	82.484	ENSPPAG00000041790	SF3A1	100	81.132	Pan_paniscus
ENSTRUG00000006118	sf3a1	97	82.222	ENSPPRG00000004391	SF3A1	100	81.384	Panthera_pardus
ENSTRUG00000006118	sf3a1	97	82.092	ENSPTIG00000000844	SF3A1	99	83.137	Panthera_tigris_altaica
ENSTRUG00000006118	sf3a1	97	83.137	ENSPTRG00000014240	SF3A1	100	81.761	Pan_troglodytes
ENSTRUG00000006118	sf3a1	97	82.484	ENSPANG00000020772	SF3A1	100	81.635	Papio_anubis
ENSTRUG00000006118	sf3a1	87	93.407	ENSPSIG00000012803	SF3A1	99	93.407	Pelodiscus_sinensis
ENSTRUG00000006118	sf3a1	97	86.614	ENSPMGG00000023096	sf3a1	79	89.465	Periophthalmus_magnuspinnatus
ENSTRUG00000006118	sf3a1	97	82.368	ENSPEMG00000009494	Sf3a1	100	81.533	Peromyscus_maniculatus_bairdii
ENSTRUG00000006118	sf3a1	68	77.941	ENSPMAG00000007139	-	95	77.639	Petromyzon_marinus
ENSTRUG00000006118	sf3a1	97	81.830	ENSPCIG00000022692	SF3A1	100	81.234	Phascolarctos_cinereus
ENSTRUG00000006118	sf3a1	100	79.055	ENSPFOG00000016768	sf3a1	100	78.981	Poecilia_formosa
ENSTRUG00000006118	sf3a1	100	88.945	ENSPLAG00000017268	sf3a1	100	88.945	Poecilia_latipinna
ENSTRUG00000006118	sf3a1	96	88.956	ENSPMEG00000019811	sf3a1	100	88.956	Poecilia_mexicana
ENSTRUG00000006118	sf3a1	100	89.072	ENSPREG00000010347	sf3a1	100	89.072	Poecilia_reticulata
ENSTRUG00000006118	sf3a1	97	82.484	ENSPPYG00000011707	SF3A1	100	81.635	Pongo_abelii
ENSTRUG00000006118	sf3a1	58	81.818	ENSPCAG00000003266	SF3A1	57	81.818	Procavia_capensis
ENSTRUG00000006118	sf3a1	97	82.461	ENSPCOG00000026630	SF3A1	100	81.612	Propithecus_coquereli
ENSTRUG00000006118	sf3a1	95	81.660	ENSPVAG00000017719	SF3A1	94	82.463	Pteropus_vampyrus
ENSTRUG00000006118	sf3a1	100	88.662	ENSPNYG00000018706	sf3a1	100	89.682	Pundamilia_nyererei
ENSTRUG00000006118	sf3a1	99	85.714	ENSPNAG00000003721	sf3a1	99	86.607	Pygocentrus_nattereri
ENSTRUG00000006118	sf3a1	97	82.353	ENSRNOG00000005218	Sf3a1	99	81.187	Rattus_norvegicus
ENSTRUG00000006118	sf3a1	97	82.484	ENSRBIG00000032167	SF3A1	100	81.635	Rhinopithecus_bieti
ENSTRUG00000006118	sf3a1	97	82.484	ENSRROG00000044908	SF3A1	100	81.635	Rhinopithecus_roxellana
ENSTRUG00000006118	sf3a1	94	82.041	ENSSBOG00000021960	SF3A1	98	82.635	Saimiri_boliviensis_boliviensis
ENSTRUG00000006118	sf3a1	99	78.553	ENSSHAG00000003666	SF3A1	98	79.974	Sarcophilus_harrisii
ENSTRUG00000006118	sf3a1	100	85.461	ENSSFOG00015004579	sf3a1	100	87.105	Scleropages_formosus
ENSTRUG00000006118	sf3a1	100	85.696	ENSSMAG00000004275	sf3a1	79	88.045	Scophthalmus_maximus
ENSTRUG00000006118	sf3a1	100	90.064	ENSSDUG00000022219	sf3a1	100	90.191	Seriola_dumerili
ENSTRUG00000006118	sf3a1	100	90.064	ENSSLDG00000012642	sf3a1	100	90.191	Seriola_lalandi_dorsalis
ENSTRUG00000006118	sf3a1	97	79.739	ENSSARG00000005960	SF3A1	99	80.131	Sorex_araneus
ENSTRUG00000006118	sf3a1	97	81.274	ENSSPUG00000018863	SF3A1	78	82.830	Sphenodon_punctatus
ENSTRUG00000006118	sf3a1	100	90.573	ENSSPAG00000011856	sf3a1	100	90.701	Stegastes_partitus
ENSTRUG00000006118	sf3a1	97	82.484	ENSSSCG00000010002	SF3A1	100	81.635	Sus_scrofa
ENSTRUG00000006118	sf3a1	96	81.686	ENSTGUG00000010547	SF3A1	99	82.445	Taeniopygia_guttata
ENSTRUG00000006118	sf3a1	64	88.652	ENSTNIG00000005713	sf3a1	81	95.413	Tetraodon_nigroviridis
ENSTRUG00000006118	sf3a1	97	75.686	ENSTBEG00000012771	SF3A1	100	74.717	Tupaia_belangeri
ENSTRUG00000006118	sf3a1	97	81.854	ENSTTRG00000001535	SF3A1	100	81.030	Tursiops_truncatus
ENSTRUG00000006118	sf3a1	99	79.341	ENSUAMG00000006750	SF3A1	99	80.355	Ursus_americanus
ENSTRUG00000006118	sf3a1	100	80.563	ENSUMAG00000016665	SF3A1	99	81.865	Ursus_maritimus
ENSTRUG00000006118	sf3a1	97	82.092	ENSVVUG00000003075	SF3A1	100	81.258	Vulpes_vulpes
ENSTRUG00000006118	sf3a1	100	76.942	ENSXETG00000016144	sf3a1	96	84.615	Xenopus_tropicalis
ENSTRUG00000006118	sf3a1	100	89.172	ENSXCOG00000015653	sf3a1	100	89.172	Xiphophorus_couchianus
ENSTRUG00000006118	sf3a1	100	89.172	ENSXMAG00000002753	sf3a1	100	89.172	Xiphophorus_maculatus