EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000006264 (Gene tree)
Gene ID: 101068882
Gene Symbol: polr1c
Alias: zgc:65973
Full Name: RNA polymerase I and III subunit C
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 5917 bases
Position: chrHE591806.1:292517-298433
Accession: 101068882
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000015299	RNA_pol_A_bac	PF01000.26	1.9e-29	1	1
ENSTRUP00000015298	RNA_pol_A_bac	PF01000.26	6.9e-27	1	1
ENSTRUP00000015298	RNA_pol_L	PF01193.24	2.2e-23	1	1
ENSTRUP00000015299	RNA_pol_L	PF01193.24	3.6e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000015368	-	1189	XM_003978291	ENSTRUP00000015299	351 (aa)	XP_003978340	H2SSB2
ENSTRUT00000015367	-	897	-	ENSTRUP00000015298	298 (aa)	-	H2SSB1

Gene Model

Click here to download ENSTRUG00000006264's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03020	RNA polymerase	KEGG
tru04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000006264's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000006264	polr1c	99	69.828	ENSG00000171453	POLR1C	100	70.400	Homo_sapiens
ENSTRUG00000006264	polr1c	99	84.571	ENSAPOG00000024356	polr1c	99	84.571	Acanthochromis_polyacanthus
ENSTRUG00000006264	polr1c	99	69.540	ENSAMEG00000012205	POLR1C	99	69.540	Ailuropoda_melanoleuca
ENSTRUG00000006264	polr1c	93	74.695	ENSACIG00000016268	polr1c	90	74.695	Amphilophus_citrinellus
ENSTRUG00000006264	polr1c	99	84.571	ENSAOCG00000011687	polr1c	97	84.571	Amphiprion_ocellaris
ENSTRUG00000006264	polr1c	99	85.143	ENSAPEG00000002433	polr1c	99	85.143	Amphiprion_percula
ENSTRUG00000006264	polr1c	99	86.246	ENSATEG00000005985	polr1c	99	86.246	Anabas_testudineus
ENSTRUG00000006264	polr1c	83	72.414	ENSAPLG00000002908	POLR1C	100	69.408	Anas_platyrhynchos
ENSTRUG00000006264	polr1c	89	69.329	ENSACAG00000009764	POLR1C	88	69.329	Anolis_carolinensis
ENSTRUG00000006264	polr1c	99	69.828	ENSANAG00000025805	POLR1C	98	69.828	Aotus_nancymaae
ENSTRUG00000006264	polr1c	56	30.612	ENSACLG00000004854	polr2c	78	30.612	Astatotilapia_calliptera
ENSTRUG00000006264	polr1c	100	85.185	ENSACLG00000006573	polr1c	100	85.185	Astatotilapia_calliptera
ENSTRUG00000006264	polr1c	100	78.348	ENSAMXG00000012062	polr1c	100	77.852	Astyanax_mexicanus
ENSTRUG00000006264	polr1c	99	70.402	ENSBTAG00000018969	POLR1C	99	70.402	Bos_taurus
ENSTRUG00000006264	polr1c	99	43.490	WBGene00019275	rpac-40	98	43.490	Caenorhabditis_elegans
ENSTRUG00000006264	polr1c	99	68.678	ENSCJAG00000005594	POLR1C	99	68.678	Callithrix_jacchus
ENSTRUG00000006264	polr1c	99	69.540	ENSCAFG00000001872	POLR1C	99	69.540	Canis_familiaris
ENSTRUG00000006264	polr1c	99	69.540	ENSCAFG00020012018	POLR1C	99	69.540	Canis_lupus_dingo
ENSTRUG00000006264	polr1c	59	30.899	ENSCAFG00020007660	POLR2C	55	31.122	Canis_lupus_dingo
ENSTRUG00000006264	polr1c	99	69.540	ENSCHIG00000004352	POLR1C	99	69.540	Capra_hircus
ENSTRUG00000006264	polr1c	99	69.828	ENSTSYG00000011921	POLR1C	99	69.828	Carlito_syrichta
ENSTRUG00000006264	polr1c	86	70.861	ENSCAPG00000015364	POLR1C	87	70.861	Cavia_aperea
ENSTRUG00000006264	polr1c	99	70.690	ENSCPOG00000038098	POLR1C	99	70.690	Cavia_porcellus
ENSTRUG00000006264	polr1c	99	69.253	ENSCCAG00000020169	POLR1C	99	69.253	Cebus_capucinus
ENSTRUG00000006264	polr1c	99	69.828	ENSCATG00000044045	POLR1C	99	69.828	Cercocebus_atys
ENSTRUG00000006264	polr1c	99	70.977	ENSCLAG00000009266	POLR1C	99	70.977	Chinchilla_lanigera
ENSTRUG00000006264	polr1c	99	68.966	ENSCSAG00000011913	POLR1C	99	68.966	Chlorocebus_sabaeus
ENSTRUG00000006264	polr1c	60	67.773	ENSCHOG00000006601	POLR1C	99	67.773	Choloepus_hoffmanni
ENSTRUG00000006264	polr1c	99	72.779	ENSCPBG00000025203	POLR1C	99	72.779	Chrysemys_picta_bellii
ENSTRUG00000006264	polr1c	97	54.227	ENSCING00000003563	-	97	54.227	Ciona_intestinalis
ENSTRUG00000006264	polr1c	99	69.828	ENSCANG00000043167	POLR1C	99	69.828	Colobus_angolensis_palliatus
ENSTRUG00000006264	polr1c	99	68.391	ENSCGRG00001017533	Polr1c	99	68.391	Cricetulus_griseus_chok1gshd
ENSTRUG00000006264	polr1c	86	69.205	ENSCGRG00000013225	Polr1c	99	69.205	Cricetulus_griseus_crigri
ENSTRUG00000006264	polr1c	100	82.621	ENSCSEG00000018097	polr1c	100	82.621	Cynoglossus_semilaevis
ENSTRUG00000006264	polr1c	60	87.264	ENSCVAG00000005684	polr1c	89	85.202	Cyprinodon_variegatus
ENSTRUG00000006264	polr1c	99	78.286	ENSDARG00000039400	polr1c	96	78.286	Danio_rerio
ENSTRUG00000006264	polr1c	99	70.402	ENSDNOG00000042693	POLR1C	99	70.402	Dasypus_novemcinctus
ENSTRUG00000006264	polr1c	99	69.828	ENSDORG00000000429	Polr1c	99	69.828	Dipodomys_ordii
ENSTRUG00000006264	polr1c	90	51.104	FBgn0031657	CG3756	93	51.104	Drosophila_melanogaster
ENSTRUG00000006264	polr1c	99	66.092	ENSETEG00000010807	POLR1C	99	66.092	Echinops_telfairi
ENSTRUG00000006264	polr1c	99	64.841	ENSEBUG00000013725	polr1c	99	64.841	Eptatretus_burgeri
ENSTRUG00000006264	polr1c	99	70.115	ENSEASG00005003338	POLR1C	99	70.115	Equus_asinus_asinus
ENSTRUG00000006264	polr1c	99	70.115	ENSECAG00000023516	POLR1C	99	69.492	Equus_caballus
ENSTRUG00000006264	polr1c	99	70.402	ENSEEUG00000005471	POLR1C	99	70.402	Erinaceus_europaeus
ENSTRUG00000006264	polr1c	100	78.523	ENSELUG00000013027	polr1c	100	78.523	Esox_lucius
ENSTRUG00000006264	polr1c	99	70.115	ENSFCAG00000009735	POLR1C	99	70.115	Felis_catus
ENSTRUG00000006264	polr1c	93	69.725	ENSFALG00000012111	POLR1C	100	69.725	Ficedula_albicollis
ENSTRUG00000006264	polr1c	99	69.828	ENSFDAG00000008428	POLR1C	99	69.828	Fukomys_damarensis
ENSTRUG00000006264	polr1c	57	79.070	ENSFHEG00000013867	-	84	79.651	Fundulus_heteroclitus
ENSTRUG00000006264	polr1c	100	83.557	ENSFHEG00000000262	polr1c	100	83.557	Fundulus_heteroclitus
ENSTRUG00000006264	polr1c	93	78.659	ENSGMOG00000013878	polr1c	100	78.659	Gadus_morhua
ENSTRUG00000006264	polr1c	99	69.628	ENSGALG00000010349	POLR1C	99	69.628	Gallus_gallus
ENSTRUG00000006264	polr1c	100	83.761	ENSGAFG00000010153	polr1c	100	83.761	Gambusia_affinis
ENSTRUG00000006264	polr1c	100	81.197	ENSGACG00000002453	polr1c	100	81.197	Gasterosteus_aculeatus
ENSTRUG00000006264	polr1c	98	72.965	ENSGAGG00000010640	POLR1C	98	72.965	Gopherus_agassizii
ENSTRUG00000006264	polr1c	99	69.828	ENSGGOG00000010903	POLR1C	99	69.828	Gorilla_gorilla
ENSTRUG00000006264	polr1c	56	30.612	ENSHBUG00000023040	polr2c	78	30.612	Haplochromis_burtoni
ENSTRUG00000006264	polr1c	100	78.348	ENSHBUG00000017816	polr1c	100	78.348	Haplochromis_burtoni
ENSTRUG00000006264	polr1c	99	69.828	ENSHGLG00000019441	POLR1C	99	70.722	Heterocephalus_glaber_female
ENSTRUG00000006264	polr1c	99	70.115	ENSHGLG00100005970	POLR1C	99	70.722	Heterocephalus_glaber_male
ENSTRUG00000006264	polr1c	99	79.251	ENSHCOG00000002179	polr1c	99	79.251	Hippocampus_comes
ENSTRUG00000006264	polr1c	99	77.810	ENSIPUG00000024464	polr1c	99	77.810	Ictalurus_punctatus
ENSTRUG00000006264	polr1c	99	69.828	ENSSTOG00000010631	POLR1C	99	69.828	Ictidomys_tridecemlineatus
ENSTRUG00000006264	polr1c	99	69.540	ENSJJAG00000023110	Polr1c	99	69.540	Jaculus_jaculus
ENSTRUG00000006264	polr1c	100	84.046	ENSKMAG00000014305	polr1c	100	83.893	Kryptolebias_marmoratus
ENSTRUG00000006264	polr1c	100	85.185	ENSLBEG00000014925	polr1c	100	85.185	Labrus_bergylta
ENSTRUG00000006264	polr1c	95	58.036	ENSLACG00000012567	POLR1C	98	58.036	Latimeria_chalumnae
ENSTRUG00000006264	polr1c	99	76.000	ENSLOCG00000016710	polr1c	95	76.000	Lepisosteus_oculatus
ENSTRUG00000006264	polr1c	86	70.724	ENSLAFG00000026248	POLR1C	99	70.724	Loxodonta_africana
ENSTRUG00000006264	polr1c	59	30.899	ENSLAFG00000027230	POLR2C	74	30.806	Loxodonta_africana
ENSTRUG00000006264	polr1c	99	69.540	ENSMFAG00000046295	POLR1C	99	69.540	Macaca_fascicularis
ENSTRUG00000006264	polr1c	99	69.540	ENSMMUG00000015192	POLR1C	99	69.540	Macaca_mulatta
ENSTRUG00000006264	polr1c	99	69.540	ENSMNEG00000028073	POLR1C	99	69.540	Macaca_nemestrina
ENSTRUG00000006264	polr1c	99	69.540	ENSMLEG00000034818	POLR1C	99	69.540	Mandrillus_leucophaeus
ENSTRUG00000006264	polr1c	100	85.755	ENSMAMG00000008700	polr1c	100	85.755	Mastacembelus_armatus
ENSTRUG00000006264	polr1c	100	84.900	ENSMZEG00005018545	polr1c	100	84.900	Maylandia_zebra
ENSTRUG00000006264	polr1c	84	68.475	ENSMGAG00000011020	POLR1C	100	68.475	Meleagris_gallopavo
ENSTRUG00000006264	polr1c	99	68.966	ENSMAUG00000014329	Polr1c	99	68.966	Mesocricetus_auratus
ENSTRUG00000006264	polr1c	99	69.253	ENSMICG00000005027	POLR1C	99	69.253	Microcebus_murinus
ENSTRUG00000006264	polr1c	58	31.100	ENSMOCG00000013652	Polr2c	72	31.100	Microtus_ochrogaster
ENSTRUG00000006264	polr1c	99	69.253	ENSMOCG00000017549	Polr1c	99	69.253	Microtus_ochrogaster
ENSTRUG00000006264	polr1c	100	82.550	ENSMMOG00000005380	polr1c	100	82.550	Mola_mola
ENSTRUG00000006264	polr1c	84	72.109	ENSMODG00000018964	POLR1C	99	72.109	Monodelphis_domestica
ENSTRUG00000006264	polr1c	100	83.893	ENSMALG00000011711	polr1c	100	83.893	Monopterus_albus
ENSTRUG00000006264	polr1c	99	62.069	MGP_CAROLIEiJ_G0021662	Polr1c	99	69.962	Mus_caroli
ENSTRUG00000006264	polr1c	99	69.253	ENSMUSG00000067148	Polr1c	99	70.342	Mus_musculus
ENSTRUG00000006264	polr1c	99	70.115	MGP_PahariEiJ_G0020654	Polr1c	99	71.103	Mus_pahari
ENSTRUG00000006264	polr1c	99	69.253	MGP_SPRETEiJ_G0022574	Polr1c	99	70.342	Mus_spretus
ENSTRUG00000006264	polr1c	99	69.540	ENSMPUG00000012916	POLR1C	91	69.540	Mustela_putorius_furo
ENSTRUG00000006264	polr1c	99	70.115	ENSMLUG00000017751	POLR1C	99	70.115	Myotis_lucifugus
ENSTRUG00000006264	polr1c	99	69.540	ENSNGAG00000023487	Polr1c	99	71.088	Nannospalax_galili
ENSTRUG00000006264	polr1c	100	85.755	ENSNBRG00000018742	polr1c	100	85.755	Neolamprologus_brichardi
ENSTRUG00000006264	polr1c	99	69.540	ENSNLEG00000004035	POLR1C	99	69.540	Nomascus_leucogenys
ENSTRUG00000006264	polr1c	99	60.057	ENSMEUG00000006778	POLR1C	99	60.057	Notamacropus_eugenii
ENSTRUG00000006264	polr1c	77	68.030	ENSOPRG00000000145	POLR1C	99	68.030	Ochotona_princeps
ENSTRUG00000006264	polr1c	99	71.264	ENSODEG00000015831	-	99	71.264	Octodon_degus
ENSTRUG00000006264	polr1c	63	68.919	ENSODEG00000017109	-	99	68.919	Octodon_degus
ENSTRUG00000006264	polr1c	100	86.040	ENSONIG00000013133	polr1c	98	86.040	Oreochromis_niloticus
ENSTRUG00000006264	polr1c	99	67.816	ENSOANG00000003043	POLR1C	99	67.816	Ornithorhynchus_anatinus
ENSTRUG00000006264	polr1c	99	68.391	ENSOCUG00000005504	POLR1C	99	68.391	Oryctolagus_cuniculus
ENSTRUG00000006264	polr1c	99	80.460	ENSORLG00000019743	polr1c	99	80.460	Oryzias_latipes
ENSTRUG00000006264	polr1c	99	81.322	ENSORLG00020006489	POLR1C	99	81.322	Oryzias_latipes_hni
ENSTRUG00000006264	polr1c	76	63.869	ENSORLG00020005555	polr1c	81	63.869	Oryzias_latipes_hni
ENSTRUG00000006264	polr1c	99	81.322	ENSORLG00015013322	polr1c	99	81.322	Oryzias_latipes_hsok
ENSTRUG00000006264	polr1c	99	81.609	ENSOMEG00000016527	polr1c	99	81.609	Oryzias_melastigma
ENSTRUG00000006264	polr1c	99	68.966	ENSOGAG00000016318	POLR1C	99	68.966	Otolemur_garnettii
ENSTRUG00000006264	polr1c	99	70.115	ENSOARG00000007503	POLR1C	99	70.115	Ovis_aries
ENSTRUG00000006264	polr1c	99	69.828	ENSPPAG00000043678	POLR1C	99	69.828	Pan_paniscus
ENSTRUG00000006264	polr1c	99	70.115	ENSPPRG00000009760	POLR1C	99	70.115	Panthera_pardus
ENSTRUG00000006264	polr1c	99	70.115	ENSPTIG00000014813	POLR1C	99	70.115	Panthera_tigris_altaica
ENSTRUG00000006264	polr1c	99	69.828	ENSPTRG00000018202	POLR1C	99	69.828	Pan_troglodytes
ENSTRUG00000006264	polr1c	99	69.828	ENSPANG00000009025	POLR1C	98	69.828	Papio_anubis
ENSTRUG00000006264	polr1c	100	76.638	ENSPKIG00000009858	polr1c	100	76.638	Paramormyrops_kingsleyae
ENSTRUG00000006264	polr1c	99	71.552	ENSPSIG00000012580	POLR1C	94	71.552	Pelodiscus_sinensis
ENSTRUG00000006264	polr1c	99	82.828	ENSPMGG00000012121	polr1c	99	82.828	Periophthalmus_magnuspinnatus
ENSTRUG00000006264	polr1c	59	30.168	ENSPMGG00000021249	polr2c	77	30.500	Periophthalmus_magnuspinnatus
ENSTRUG00000006264	polr1c	99	69.253	ENSPEMG00000006970	Polr1c	99	69.253	Peromyscus_maniculatus_bairdii
ENSTRUG00000006264	polr1c	99	67.898	ENSPMAG00000005560	polr1c	99	67.898	Petromyzon_marinus
ENSTRUG00000006264	polr1c	59	32.967	ENSPMAG00000004827	polr2c	81	32.500	Petromyzon_marinus
ENSTRUG00000006264	polr1c	99	70.115	ENSPCIG00000028137	POLR1C	99	69.492	Phascolarctos_cinereus
ENSTRUG00000006264	polr1c	100	84.330	ENSPFOG00000014357	polr1c	98	84.330	Poecilia_formosa
ENSTRUG00000006264	polr1c	100	84.330	ENSPFOG00000014342	POLR1C	100	84.330	Poecilia_formosa
ENSTRUG00000006264	polr1c	60	86.792	ENSPLAG00000004111	polr1c	93	85.135	Poecilia_latipinna
ENSTRUG00000006264	polr1c	100	84.330	ENSPMEG00000008420	polr1c	100	84.330	Poecilia_mexicana
ENSTRUG00000006264	polr1c	100	84.330	ENSPMEG00000011877	-	100	84.330	Poecilia_mexicana
ENSTRUG00000006264	polr1c	100	84.046	ENSPREG00000007985	polr1c	100	84.046	Poecilia_reticulata
ENSTRUG00000006264	polr1c	99	69.828	ENSPPYG00000016645	POLR1C	99	69.828	Pongo_abelii
ENSTRUG00000006264	polr1c	99	69.253	ENSPCOG00000024628	POLR1C	99	69.253	Propithecus_coquereli
ENSTRUG00000006264	polr1c	99	64.080	ENSPVAG00000005689	POLR1C	99	64.080	Pteropus_vampyrus
ENSTRUG00000006264	polr1c	100	85.185	ENSPNYG00000003620	polr1c	100	85.185	Pundamilia_nyererei
ENSTRUG00000006264	polr1c	100	78.917	ENSPNAG00000008443	polr1c	100	78.917	Pygocentrus_nattereri
ENSTRUG00000006264	polr1c	99	69.253	ENSRNOG00000019079	Polr1c	99	69.253	Rattus_norvegicus
ENSTRUG00000006264	polr1c	99	69.540	ENSRBIG00000007155	POLR1C	99	69.540	Rhinopithecus_bieti
ENSTRUG00000006264	polr1c	99	69.828	ENSRROG00000000257	POLR1C	99	69.828	Rhinopithecus_roxellana
ENSTRUG00000006264	polr1c	92	47.077	YPR110C	RPC40	95	47.077	Saccharomyces_cerevisiae
ENSTRUG00000006264	polr1c	99	69.253	ENSSBOG00000025735	POLR1C	99	69.032	Saimiri_boliviensis_boliviensis
ENSTRUG00000006264	polr1c	99	65.812	ENSSHAG00000014456	POLR1C	99	65.812	Sarcophilus_harrisii
ENSTRUG00000006264	polr1c	100	77.778	ENSSFOG00015019860	polr1c	100	77.778	Scleropages_formosus
ENSTRUG00000006264	polr1c	100	84.900	ENSSMAG00000018865	polr1c	100	84.900	Scophthalmus_maximus
ENSTRUG00000006264	polr1c	100	86.895	ENSSDUG00000015745	polr1c	100	86.242	Seriola_dumerili
ENSTRUG00000006264	polr1c	100	86.325	ENSSLDG00000018285	polr1c	100	85.570	Seriola_lalandi_dorsalis
ENSTRUG00000006264	polr1c	99	68.481	ENSSPUG00000011822	POLR1C	99	68.481	Sphenodon_punctatus
ENSTRUG00000006264	polr1c	100	85.470	ENSSPAG00000022369	polr1c	100	85.470	Stegastes_partitus
ENSTRUG00000006264	polr1c	99	69.828	ENSSSCG00000028007	POLR1C	98	69.828	Sus_scrofa
ENSTRUG00000006264	polr1c	96	70.238	ENSTGUG00000009159	POLR1C	99	70.238	Taeniopygia_guttata
ENSTRUG00000006264	polr1c	50	70.621	ENSTBEG00000002254	POLR1C	99	70.621	Tupaia_belangeri
ENSTRUG00000006264	polr1c	76	70.301	ENSTTRG00000006344	POLR1C	75	70.301	Tursiops_truncatus
ENSTRUG00000006264	polr1c	99	70.115	ENSUAMG00000025602	POLR1C	99	70.115	Ursus_americanus
ENSTRUG00000006264	polr1c	99	70.115	ENSUMAG00000005938	POLR1C	99	70.115	Ursus_maritimus
ENSTRUG00000006264	polr1c	99	68.814	ENSVVUG00000028922	POLR1C	99	68.814	Vulpes_vulpes
ENSTRUG00000006264	polr1c	99	65.330	ENSXETG00000010882	polr1c	99	65.330	Xenopus_tropicalis
ENSTRUG00000006264	polr1c	100	82.906	ENSXCOG00000014185	polr1c	100	82.906	Xiphophorus_couchianus
ENSTRUG00000006264	polr1c	100	83.761	ENSXMAG00000015076	polr1c	100	83.761	Xiphophorus_maculatus