EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSTRUG00000007030 (Gene tree)
Gene ID
101075419
Gene Symbol
cpsf3
Alias
si:dkey-81b15.1|wu:fc32f10|zgc:101655
Full Name
cleavage and polyadenylation specificity factor subunit 3-like
Gene Type
protein_coding
Species
Takifugu_rubripes
Status
putative
Strand
Plus strand
Length
7272 bases
Position
chrHE591725.1:174905-182176
Accession
101075419
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSTRUP00000017267CPSF73-100_CPF11718.81.8e-5011
ENSTRUP00000056849CPSF73-100_CPF11718.83e-4611
ENSTRUP00000017267Beta-CaspPF10996.87.5e-3411
ENSTRUP00000056849Beta-CaspPF10996.83.2e-1911
ENSTRUP00000017267Lactamase_BPF00753.272.2e-1811
ENSTRUP00000056849RMMBLPF07521.122.7e-2111
ENSTRUP00000017267RMMBLPF07521.125.2e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSTRUT00000051112-1227-ENSTRUP00000056849408 (aa)--
ENSTRUT00000017341-2206XM_003977462ENSTRUP00000017267696 (aa)XP_003977511H2SXX9
Gene Model
Click here to download ENSTRUG00000007030's gene model file
Pathways
Pathway IDPathway NameSource
tru03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000007030's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSTRUG00000007030cpsf36738.316ENSTRUG00000005523ints118340.517
ENSTRUG00000007030cpsf39772.139ENSTRUG00000013905CPSF39972.139
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSTRUG00000007030cpsf39784.853ENSG00000119203CPSF310099.265Homo_sapiens
ENSTRUG00000007030cpsf37396.450ENSAPOG00000012241CPSF39196.450Acanthochromis_polyacanthus
ENSTRUG00000007030cpsf39892.409ENSAPOG00000022087cpsf39992.409Acanthochromis_polyacanthus
ENSTRUG00000007030cpsf39785.294ENSAMEG00000008493CPSF39985.294Ailuropoda_melanoleuca
ENSTRUG00000007030cpsf39783.750ENSACIG00000009846cpsf39981.050Amphilophus_citrinellus
ENSTRUG00000007030cpsf39779.703ENSACIG00000023663CPSF39980.261Amphilophus_citrinellus
ENSTRUG00000007030cpsf39887.645ENSAOCG00000010077CPSF39987.645Amphiprion_ocellaris
ENSTRUG00000007030cpsf39892.409ENSAOCG00000022056cpsf39992.409Amphiprion_ocellaris
ENSTRUG00000007030cpsf39887.645ENSAPEG00000021167CPSF39987.645Amphiprion_percula
ENSTRUG00000007030cpsf39892.409ENSAPEG00000019526cpsf39992.409Amphiprion_percula
ENSTRUG00000007030cpsf39884.157ENSATEG00000014525CPSF39984.157Anabas_testudineus
ENSTRUG00000007030cpsf39893.285ENSATEG00000003959cpsf39993.285Anabas_testudineus
ENSTRUG00000007030cpsf39585.075ENSAPLG00000006941CPSF39885.075Anas_platyrhynchos
ENSTRUG00000007030cpsf39082.390ENSACAG00000001759CPSF39982.390Anolis_carolinensis
ENSTRUG00000007030cpsf39780.000ENSANAG00000031254CPSF39980.480Aotus_nancymaae
ENSTRUG00000007030cpsf39591.982ENSACLG00000014484cpsf39991.982Astatotilapia_calliptera
ENSTRUG00000007030cpsf39779.950ENSACLG00000018846CPSF39979.971Astatotilapia_calliptera
ENSTRUG00000007030cpsf39886.192ENSAMXG00000004786cpsf39986.192Astyanax_mexicanus
ENSTRUG00000007030cpsf39785.147ENSBTAG00000019735CPSF39985.147Bos_taurus
ENSTRUG00000007030cpsf38957.729WBGene00013460cpsf-38957.729Caenorhabditis_elegans
ENSTRUG00000007030cpsf39784.853ENSCJAG00000006276CPSF39984.853Callithrix_jacchus
ENSTRUG00000007030cpsf39785.294ENSCAFG00000003375CPSF39585.294Canis_familiaris
ENSTRUG00000007030cpsf38988.006ENSCAFG00020026799CPSF39988.006Canis_lupus_dingo
ENSTRUG00000007030cpsf39785.147ENSCHIG00000013973CPSF39985.147Capra_hircus
ENSTRUG00000007030cpsf39784.853ENSTSYG00000002967CPSF39984.853Carlito_syrichta
ENSTRUG00000007030cpsf39585.113ENSCAPG00000013851CPSF39985.113Cavia_aperea
ENSTRUG00000007030cpsf39785.147ENSCPOG00000011299CPSF39985.147Cavia_porcellus
ENSTRUG00000007030cpsf39784.706ENSCCAG00000036730CPSF39984.706Cebus_capucinus
ENSTRUG00000007030cpsf39783.382ENSCATG00000014770CPSF39990.846Cercocebus_atys
ENSTRUG00000007030cpsf39785.294ENSCLAG00000002727CPSF39985.294Chinchilla_lanigera
ENSTRUG00000007030cpsf39776.912ENSCSAG00000007125CPSF39976.912Chlorocebus_sabaeus
ENSTRUG00000007030cpsf384100.000ENSCHOG00000000180CPSF38561.268Choloepus_hoffmanni
ENSTRUG00000007030cpsf39885.341ENSCPBG00000014074CPSF39985.341Chrysemys_picta_bellii
ENSTRUG00000007030cpsf39666.910ENSCING00000007214-9766.910Ciona_intestinalis
ENSTRUG00000007030cpsf39775.439ENSCANG00000034435CPSF39975.439Colobus_angolensis_palliatus
ENSTRUG00000007030cpsf39784.853ENSCGRG00001013134Cpsf39984.853Cricetulus_griseus_chok1gshd
ENSTRUG00000007030cpsf39784.853ENSCGRG00000018319Cpsf39984.853Cricetulus_griseus_crigri
ENSTRUG00000007030cpsf39886.792ENSCSEG00000002021CPSF39986.792Cynoglossus_semilaevis
ENSTRUG00000007030cpsf37676.527ENSCVAG00000022039-9477.707Cyprinodon_variegatus
ENSTRUG00000007030cpsf39886.919ENSCVAG00000015067CPSF39986.919Cyprinodon_variegatus
ENSTRUG00000007030cpsf39885.756ENSDARG00000027649cpsf39985.756Danio_rerio
ENSTRUG00000007030cpsf39784.141ENSDNOG00000008940CPSF39584.141Dasypus_novemcinctus
ENSTRUG00000007030cpsf39386.133ENSDORG00000014263Cpsf39986.133Dipodomys_ordii
ENSTRUG00000007030cpsf39766.174FBgn0261065Cpsf739966.174Drosophila_melanogaster
ENSTRUG00000007030cpsf39077.005ENSETEG00000003893CPSF39973.765Echinops_telfairi
ENSTRUG00000007030cpsf39874.294ENSEBUG00000009018cpsf39974.294Eptatretus_burgeri
ENSTRUG00000007030cpsf39785.294ENSEASG00005003970CPSF39985.294Equus_asinus_asinus
ENSTRUG00000007030cpsf39785.294ENSECAG00000019911CPSF39690.556Equus_caballus
ENSTRUG00000007030cpsf39770.588ENSEEUG00000015422CPSF39970.588Erinaceus_europaeus
ENSTRUG00000007030cpsf39888.696ENSELUG00000013775cpsf310088.696Esox_lucius
ENSTRUG00000007030cpsf39785.147ENSFCAG00000007852CPSF39985.147Felis_catus
ENSTRUG00000007030cpsf39284.961ENSFALG00000006572CPSF39984.961Ficedula_albicollis
ENSTRUG00000007030cpsf39784.457ENSFDAG00000006317CPSF39984.457Fukomys_damarensis
ENSTRUG00000007030cpsf39765.196ENSFHEG00000012186CPSF39966.422Fundulus_heteroclitus
ENSTRUG00000007030cpsf39889.489ENSFHEG00000014774cpsf39989.489Fundulus_heteroclitus
ENSTRUG00000007030cpsf39889.504ENSGMOG00000003157cpsf39989.504Gadus_morhua
ENSTRUG00000007030cpsf39885.153ENSGALG00000016424CPSF39985.153Gallus_gallus
ENSTRUG00000007030cpsf39781.818ENSGAFG00000019449cpsf39981.579Gambusia_affinis
ENSTRUG00000007030cpsf39887.373ENSGAFG00000008016CPSF39987.373Gambusia_affinis
ENSTRUG00000007030cpsf39876.961ENSGAGG00000025583CPSF39479.830Gopherus_agassizii
ENSTRUG00000007030cpsf39782.734ENSGGOG00000001757CPSF39196.996Gorilla_gorilla
ENSTRUG00000007030cpsf39891.825ENSHBUG00000001188cpsf39991.825Haplochromis_burtoni
ENSTRUG00000007030cpsf39781.000ENSHBUG00000014332CPSF39981.000Haplochromis_burtoni
ENSTRUG00000007030cpsf39785.000ENSHGLG00000000666CPSF39985.000Heterocephalus_glaber_female
ENSTRUG00000007030cpsf39785.000ENSHGLG00100007765CPSF39985.000Heterocephalus_glaber_male
ENSTRUG00000007030cpsf39986.331ENSHCOG00000015957CPSF39986.331Hippocampus_comes
ENSTRUG00000007030cpsf39891.813ENSHCOG00000007251cpsf39991.813Hippocampus_comes
ENSTRUG00000007030cpsf39885.901ENSIPUG00000023488cpsf39985.901Ictalurus_punctatus
ENSTRUG00000007030cpsf39785.147ENSSTOG00000004476CPSF39985.147Ictidomys_tridecemlineatus
ENSTRUG00000007030cpsf39785.000ENSJJAG00000023415Cpsf39985.000Jaculus_jaculus
ENSTRUG00000007030cpsf39886.773ENSKMAG00000007317CPSF39986.773Kryptolebias_marmoratus
ENSTRUG00000007030cpsf39891.387ENSKMAG00000002806cpsf39991.387Kryptolebias_marmoratus
ENSTRUG00000007030cpsf39488.432ENSLBEG00000013492CPSF39988.432Labrus_bergylta
ENSTRUG00000007030cpsf39986.127ENSLBEG00000020569cpsf39786.127Labrus_bergylta
ENSTRUG00000007030cpsf39088.441ENSLBEG00000015018-9988.710Labrus_bergylta
ENSTRUG00000007030cpsf39880.463ENSLACG00000008308CPSF39980.463Latimeria_chalumnae
ENSTRUG00000007030cpsf39887.139ENSLOCG00000016823cpsf39987.139Lepisosteus_oculatus
ENSTRUG00000007030cpsf39683.947ENSLAFG00000009467CPSF39983.947Loxodonta_africana
ENSTRUG00000007030cpsf39784.706ENSMFAG00000001339CPSF39494.179Macaca_fascicularis
ENSTRUG00000007030cpsf39284.186ENSMMUG00000018038CPSF39294.179Macaca_mulatta
ENSTRUG00000007030cpsf38896.813ENSMNEG00000039447CPSF39996.813Macaca_nemestrina
ENSTRUG00000007030cpsf39784.853ENSMLEG00000026825CPSF39296.788Mandrillus_leucophaeus
ENSTRUG00000007030cpsf39891.533ENSMAMG00000003076cpsf39991.533Mastacembelus_armatus
ENSTRUG00000007030cpsf39779.500ENSMAMG00000008835CPSF39979.420Mastacembelus_armatus
ENSTRUG00000007030cpsf39891.825ENSMZEG00005014358cpsf39991.825Maylandia_zebra
ENSTRUG00000007030cpsf39888.227ENSMZEG00005006258CPSF39988.227Maylandia_zebra
ENSTRUG00000007030cpsf39585.263ENSMGAG00000013995CPSF39985.263Meleagris_gallopavo
ENSTRUG00000007030cpsf38973.333ENSMAUG00000000166Cpsf39974.332Mesocricetus_auratus
ENSTRUG00000007030cpsf39780.645ENSMICG00000002363CPSF39980.645Microcebus_murinus
ENSTRUG00000007030cpsf39783.086ENSMOCG00000020067Cpsf39983.086Microtus_ochrogaster
ENSTRUG00000007030cpsf39386.503ENSMMOG00000018212CPSF310086.503Mola_mola
ENSTRUG00000007030cpsf36392.157ENSMMOG00000011923CPSF38477.500Mola_mola
ENSTRUG00000007030cpsf39784.134ENSMODG00000014703CPSF39984.134Monodelphis_domestica
ENSTRUG00000007030cpsf39084.044ENSMALG00000011474CPSF39984.044Monopterus_albus
ENSTRUG00000007030cpsf39892.555ENSMALG00000016416cpsf39992.555Monopterus_albus
ENSTRUG00000007030cpsf39785.000MGP_CAROLIEiJ_G0017640Cpsf39985.000Mus_caroli
ENSTRUG00000007030cpsf39785.000ENSMUSG00000054309Cpsf39697.458Mus_musculus
ENSTRUG00000007030cpsf39784.853MGP_PahariEiJ_G0029397Cpsf39984.853Mus_pahari
ENSTRUG00000007030cpsf39785.000MGP_SPRETEiJ_G0018481Cpsf39985.000Mus_spretus
ENSTRUG00000007030cpsf39785.169ENSMPUG00000013213CPSF39985.169Mustela_putorius_furo
ENSTRUG00000007030cpsf39784.581ENSMLUG00000010636CPSF39984.581Myotis_lucifugus
ENSTRUG00000007030cpsf39784.853ENSNGAG00000019836Cpsf39984.853Nannospalax_galili
ENSTRUG00000007030cpsf39779.950ENSNBRG00000010525CPSF39979.971Neolamprologus_brichardi
ENSTRUG00000007030cpsf39891.679ENSNBRG00000004770cpsf39991.679Neolamprologus_brichardi
ENSTRUG00000007030cpsf39784.706ENSNLEG00000013359CPSF39196.996Nomascus_leucogenys
ENSTRUG00000007030cpsf39754.639ENSMEUG00000013117-9954.639Notamacropus_eugenii
ENSTRUG00000007030cpsf39776.652ENSOPRG00000008902CPSF39976.652Ochotona_princeps
ENSTRUG00000007030cpsf39785.441ENSODEG00000003129CPSF39985.441Octodon_degus
ENSTRUG00000007030cpsf39892.117ENSONIG00000018812cpsf39992.117Oreochromis_niloticus
ENSTRUG00000007030cpsf39776.238ENSOANG00000008577CPSF39982.206Ornithorhynchus_anatinus
ENSTRUG00000007030cpsf39785.147ENSOCUG00000003728CPSF39985.147Oryctolagus_cuniculus
ENSTRUG00000007030cpsf39890.365ENSORLG00000018854cpsf39990.365Oryzias_latipes
ENSTRUG00000007030cpsf39890.219ENSORLG00020013331cpsf39990.219Oryzias_latipes_hni
ENSTRUG00000007030cpsf39890.365ENSORLG00015011017cpsf39990.365Oryzias_latipes_hsok
ENSTRUG00000007030cpsf39890.511ENSOMEG00000010647cpsf39690.511Oryzias_melastigma
ENSTRUG00000007030cpsf39775.000ENSOGAG00000001680CPSF39975.000Otolemur_garnettii
ENSTRUG00000007030cpsf39785.147ENSOARG00000015073CPSF39985.147Ovis_aries
ENSTRUG00000007030cpsf39784.853ENSPPAG00000042457CPSF39196.996Pan_paniscus
ENSTRUG00000007030cpsf39785.147ENSPPRG00000016790CPSF39985.147Panthera_pardus
ENSTRUG00000007030cpsf39685.398ENSPTIG00000003920CPSF39985.398Panthera_tigris_altaica
ENSTRUG00000007030cpsf39784.853ENSPTRG00000011638CPSF39196.996Pan_troglodytes
ENSTRUG00000007030cpsf39784.853ENSPANG00000016798CPSF39494.179Papio_anubis
ENSTRUG00000007030cpsf39887.373ENSPKIG00000023646cpsf39987.373Paramormyrops_kingsleyae
ENSTRUG00000007030cpsf39784.435ENSPSIG00000016144CPSF39984.435Pelodiscus_sinensis
ENSTRUG00000007030cpsf39779.442ENSPMGG00000006141-9978.446Periophthalmus_magnuspinnatus
ENSTRUG00000007030cpsf39779.250ENSPMGG00000015311CPSF39980.149Periophthalmus_magnuspinnatus
ENSTRUG00000007030cpsf39784.853ENSPEMG00000017668Cpsf39984.853Peromyscus_maniculatus_bairdii
ENSTRUG00000007030cpsf37888.214ENSPMAG00000004841cpsf39988.214Petromyzon_marinus
ENSTRUG00000007030cpsf39584.812ENSPCIG00000009823CPSF39885.429Phascolarctos_cinereus
ENSTRUG00000007030cpsf39886.792ENSPFOG00000010418-9986.792Poecilia_formosa
ENSTRUG00000007030cpsf39889.912ENSPFOG00000015922cpsf39989.912Poecilia_formosa
ENSTRUG00000007030cpsf39889.912ENSPLAG00000000882cpsf39989.912Poecilia_latipinna
ENSTRUG00000007030cpsf39778.713ENSPLAG00000021300-9979.950Poecilia_latipinna
ENSTRUG00000007030cpsf35495.045ENSPMEG00000021555CPSF38795.045Poecilia_mexicana
ENSTRUG00000007030cpsf39889.912ENSPMEG00000018309cpsf39989.912Poecilia_mexicana
ENSTRUG00000007030cpsf39781.566ENSPREG00000014875cpsf39981.287Poecilia_reticulata
ENSTRUG00000007030cpsf39882.003ENSPREG00000004482CPSF39982.003Poecilia_reticulata
ENSTRUG00000007030cpsf39780.588ENSPPYG00000012666CPSF39980.588Pongo_abelii
ENSTRUG00000007030cpsf38365.038ENSPCAG00000015042CPSF38965.038Procavia_capensis
ENSTRUG00000007030cpsf38686.207ENSPCOG00000023016CPSF39986.207Propithecus_coquereli
ENSTRUG00000007030cpsf39785.022ENSPVAG00000005324CPSF39985.022Pteropus_vampyrus
ENSTRUG00000007030cpsf37890.959ENSPNYG00000021047CPSF39183.389Pundamilia_nyererei
ENSTRUG00000007030cpsf39891.825ENSPNYG00000004405cpsf39991.825Pundamilia_nyererei
ENSTRUG00000007030cpsf39886.047ENSPNAG00000023060cpsf39986.047Pygocentrus_nattereri
ENSTRUG00000007030cpsf39785.000ENSRNOG00000052418Cpsf39985.000Rattus_norvegicus
ENSTRUG00000007030cpsf39780.000ENSRBIG00000041615CPSF39980.930Rhinopithecus_bieti
ENSTRUG00000007030cpsf39784.853ENSRROG00000033792CPSF39984.853Rhinopithecus_roxellana
ENSTRUG00000007030cpsf38341.994YLR277CYSH18541.994Saccharomyces_cerevisiae
ENSTRUG00000007030cpsf39581.465ENSSBOG00000027263CPSF39781.465Saimiri_boliviensis_boliviensis
ENSTRUG00000007030cpsf39785.000ENSSHAG00000007024CPSF39985.000Sarcophilus_harrisii
ENSTRUG00000007030cpsf39887.228ENSSFOG00015002108cpsf39987.228Scleropages_formosus
ENSTRUG00000007030cpsf39487.976ENSSMAG00000020534CPSF39787.976Scophthalmus_maximus
ENSTRUG00000007030cpsf39887.936ENSSDUG00000018498CPSF39987.936Seriola_dumerili
ENSTRUG00000007030cpsf39990.831ENSSDUG00000002828cpsf39990.831Seriola_dumerili
ENSTRUG00000007030cpsf39887.936ENSSLDG00000005234CPSF39987.936Seriola_lalandi_dorsalis
ENSTRUG00000007030cpsf39891.679ENSSLDG00000008469cpsf39791.679Seriola_lalandi_dorsalis
ENSTRUG00000007030cpsf38291.016ENSSARG00000005186CPSF38982.895Sorex_araneus
ENSTRUG00000007030cpsf39584.155ENSSPUG00000015525CPSF39784.155Sphenodon_punctatus
ENSTRUG00000007030cpsf39887.209ENSSPAG00000002906CPSF39987.209Stegastes_partitus
ENSTRUG00000007030cpsf39892.263ENSSPAG00000018579cpsf39992.263Stegastes_partitus
ENSTRUG00000007030cpsf39785.294ENSSSCG00000020799CPSF39985.294Sus_scrofa
ENSTRUG00000007030cpsf39785.191ENSTGUG00000013016CPSF39985.191Taeniopygia_guttata
ENSTRUG00000007030cpsf38290.634ENSTBEG00000002707CPSF38490.634Tupaia_belangeri
ENSTRUG00000007030cpsf38473.723ENSTTRG00000000861CPSF38773.723Tursiops_truncatus
ENSTRUG00000007030cpsf39485.976ENSUAMG00000007535CPSF39485.976Ursus_americanus
ENSTRUG00000007030cpsf39284.806ENSUMAG00000003676CPSF39589.261Ursus_maritimus
ENSTRUG00000007030cpsf39185.331ENSVPAG00000008041CPSF310085.331Vicugna_pacos
ENSTRUG00000007030cpsf39785.294ENSVVUG00000002194CPSF39985.294Vulpes_vulpes
ENSTRUG00000007030cpsf39883.671ENSXETG00000008263cpsf39983.671Xenopus_tropicalis
ENSTRUG00000007030cpsf39889.327ENSXCOG00000019695cpsf39989.327Xiphophorus_couchianus
ENSTRUG00000007030cpsf38977.089ENSXCOG00000000957-8778.437Xiphophorus_couchianus
ENSTRUG00000007030cpsf39887.228ENSXMAG00000027291CPSF39987.228Xiphophorus_maculatus
ENSTRUG00000007030cpsf39889.766ENSXMAG00000009784cpsf39989.766Xiphophorus_maculatus

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