EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000007057 (Gene tree)
Gene ID: 101070733
Gene Symbol: srp54
Alias: zgc:55842|zgc:85713
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 5186 bases
Position: chr2:10348966-10354151
Accession: 101070733
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000017337	SRP54	PF00448.22	5e-77	1	1
ENSTRUP00000017337	SRP54_N	PF02881.19	4.1e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000017411	-	2637	XM_003962793	ENSTRUP00000017337	504 (aa)	XP_003962842	H2SY48

Gene Model

Click here to download ENSTRUG00000007057's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000007057's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000007057	srp54	100	95.040	ENSG00000100883	SRP54	100	97.674	Homo_sapiens
ENSTRUG00000007057	srp54	100	98.810	ENSAPOG00000011314	srp54	100	98.810	Acanthochromis_polyacanthus
ENSTRUG00000007057	srp54	100	95.040	ENSAMEG00000015544	SRP54	100	95.040	Ailuropoda_melanoleuca
ENSTRUG00000007057	srp54	89	97.996	ENSACIG00000022831	srp54	97	97.996	Amphilophus_citrinellus
ENSTRUG00000007057	srp54	100	98.810	ENSAOCG00000019401	srp54	100	98.810	Amphiprion_ocellaris
ENSTRUG00000007057	srp54	100	98.810	ENSAPEG00000001977	srp54	100	98.810	Amphiprion_percula
ENSTRUG00000007057	srp54	100	98.611	ENSATEG00000013877	srp54	100	98.611	Anabas_testudineus
ENSTRUG00000007057	srp54	94	94.515	ENSAPLG00000010125	SRP54	95	94.515	Anas_platyrhynchos
ENSTRUG00000007057	srp54	65	78.852	ENSACAG00000001124	-	100	78.852	Anolis_carolinensis
ENSTRUG00000007057	srp54	86	91.475	ENSACAG00000010631	-	100	91.475	Anolis_carolinensis
ENSTRUG00000007057	srp54	100	94.444	ENSACAG00000002103	-	100	94.444	Anolis_carolinensis
ENSTRUG00000007057	srp54	100	95.040	ENSANAG00000022133	SRP54	100	95.040	Aotus_nancymaae
ENSTRUG00000007057	srp54	100	98.810	ENSACLG00000015866	srp54	100	98.810	Astatotilapia_calliptera
ENSTRUG00000007057	srp54	100	97.619	ENSAMXG00000032669	SRP54	100	97.619	Astyanax_mexicanus
ENSTRUG00000007057	srp54	100	95.040	ENSBTAG00000019085	SRP54	100	95.040	Bos_taurus
ENSTRUG00000007057	srp54	98	72.691	WBGene00009012	F21D5.7	100	72.691	Caenorhabditis_elegans
ENSTRUG00000007057	srp54	100	95.040	ENSCJAG00000006581	SRP54	100	95.040	Callithrix_jacchus
ENSTRUG00000007057	srp54	100	95.040	ENSCAFG00000013331	SRP54	100	95.040	Canis_familiaris
ENSTRUG00000007057	srp54	100	95.040	ENSCAFG00020023427	SRP54	100	95.040	Canis_lupus_dingo
ENSTRUG00000007057	srp54	100	95.040	ENSCHIG00000026345	SRP54	100	95.040	Capra_hircus
ENSTRUG00000007057	srp54	100	94.841	ENSTSYG00000002680	-	100	94.841	Carlito_syrichta
ENSTRUG00000007057	srp54	94	83.579	ENSTSYG00000035333	-	93	83.579	Carlito_syrichta
ENSTRUG00000007057	srp54	94	61.020	ENSCAPG00000008780	SRP54	100	61.020	Cavia_aperea
ENSTRUG00000007057	srp54	100	94.643	ENSCPOG00000003691	SRP54	100	94.643	Cavia_porcellus
ENSTRUG00000007057	srp54	90	94.524	ENSCCAG00000024179	SRP54	100	94.749	Cebus_capucinus
ENSTRUG00000007057	srp54	100	95.040	ENSCATG00000034083	SRP54	100	95.040	Cercocebus_atys
ENSTRUG00000007057	srp54	100	95.040	ENSCLAG00000015076	SRP54	100	95.040	Chinchilla_lanigera
ENSTRUG00000007057	srp54	100	95.040	ENSCSAG00000015575	SRP54	100	95.040	Chlorocebus_sabaeus
ENSTRUG00000007057	srp54	95	84.407	ENSCHOG00000008986	SRP54	100	84.407	Choloepus_hoffmanni
ENSTRUG00000007057	srp54	100	95.040	ENSCPBG00000026195	SRP54	100	95.040	Chrysemys_picta_bellii
ENSTRUG00000007057	srp54	100	82.143	ENSCING00000007380	-	100	82.143	Ciona_intestinalis
ENSTRUG00000007057	srp54	100	95.040	ENSCANG00000028532	SRP54	100	95.040	Colobus_angolensis_palliatus
ENSTRUG00000007057	srp54	100	95.437	ENSCGRG00001009525	-	100	95.437	Cricetulus_griseus_chok1gshd
ENSTRUG00000007057	srp54	76	95.844	ENSCGRG00000009453	-	89	95.844	Cricetulus_griseus_crigri
ENSTRUG00000007057	srp54	100	98.016	ENSCSEG00000012392	srp54	100	98.016	Cynoglossus_semilaevis
ENSTRUG00000007057	srp54	100	98.413	ENSCVAG00000010395	srp54	100	98.413	Cyprinodon_variegatus
ENSTRUG00000007057	srp54	100	97.817	ENSDARG00000098367	srp54	100	97.817	Danio_rerio
ENSTRUG00000007057	srp54	100	95.040	ENSDNOG00000032525	SRP54	100	95.040	Dasypus_novemcinctus
ENSTRUG00000007057	srp54	89	80.310	ENSDORG00000005159	-	98	80.310	Dipodomys_ordii
ENSTRUG00000007057	srp54	96	79.175	FBgn0010747	Srp54k	99	78.443	Drosophila_melanogaster
ENSTRUG00000007057	srp54	100	94.246	ENSETEG00000016307	-	100	94.246	Echinops_telfairi
ENSTRUG00000007057	srp54	83	55.502	ENSETEG00000012102	-	99	55.502	Echinops_telfairi
ENSTRUG00000007057	srp54	100	88.095	ENSEBUG00000009437	-	100	88.095	Eptatretus_burgeri
ENSTRUG00000007057	srp54	100	95.040	ENSEASG00005002057	SRP54	100	95.040	Equus_asinus_asinus
ENSTRUG00000007057	srp54	99	94.980	ENSECAG00000018042	SRP54	98	94.980	Equus_caballus
ENSTRUG00000007057	srp54	100	79.365	ENSEEUG00000001511	SRP54	100	79.365	Erinaceus_europaeus
ENSTRUG00000007057	srp54	100	97.024	ENSELUG00000003395	srp54	100	97.024	Esox_lucius
ENSTRUG00000007057	srp54	100	95.238	ENSFCAG00000032033	SRP54	100	95.238	Felis_catus
ENSTRUG00000007057	srp54	100	94.643	ENSFALG00000005995	SRP54	100	94.643	Ficedula_albicollis
ENSTRUG00000007057	srp54	100	95.040	ENSFDAG00000016767	SRP54	100	95.040	Fukomys_damarensis
ENSTRUG00000007057	srp54	100	98.810	ENSFHEG00000004263	srp54	100	98.810	Fundulus_heteroclitus
ENSTRUG00000007057	srp54	95	91.632	ENSGMOG00000011391	srp54	100	91.632	Gadus_morhua
ENSTRUG00000007057	srp54	100	94.643	ENSGALG00000023135	SRP54	100	94.643	Gallus_gallus
ENSTRUG00000007057	srp54	100	98.611	ENSGAFG00000011586	srp54	100	98.611	Gambusia_affinis
ENSTRUG00000007057	srp54	100	98.413	ENSGACG00000004181	srp54	100	98.413	Gasterosteus_aculeatus
ENSTRUG00000007057	srp54	100	95.040	ENSGAGG00000014766	SRP54	100	95.040	Gopherus_agassizii
ENSTRUG00000007057	srp54	100	95.040	ENSGGOG00000002926	SRP54	100	95.040	Gorilla_gorilla
ENSTRUG00000007057	srp54	100	98.810	ENSHBUG00000005678	srp54	100	98.810	Haplochromis_burtoni
ENSTRUG00000007057	srp54	100	95.040	ENSHGLG00000002850	SRP54	100	95.040	Heterocephalus_glaber_female
ENSTRUG00000007057	srp54	100	95.040	ENSHGLG00100005263	SRP54	100	95.040	Heterocephalus_glaber_male
ENSTRUG00000007057	srp54	100	66.337	ENSHGLG00100007281	-	100	66.337	Heterocephalus_glaber_male
ENSTRUG00000007057	srp54	100	97.421	ENSHCOG00000021127	srp54	100	97.421	Hippocampus_comes
ENSTRUG00000007057	srp54	100	97.024	ENSIPUG00000001420	srp54	100	97.024	Ictalurus_punctatus
ENSTRUG00000007057	srp54	100	95.040	ENSSTOG00000016023	SRP54	100	95.040	Ictidomys_tridecemlineatus
ENSTRUG00000007057	srp54	100	90.675	ENSJJAG00000013417	-	100	90.675	Jaculus_jaculus
ENSTRUG00000007057	srp54	87	74.091	ENSJJAG00000016404	-	100	74.091	Jaculus_jaculus
ENSTRUG00000007057	srp54	100	98.016	ENSKMAG00000007707	srp54	100	98.016	Kryptolebias_marmoratus
ENSTRUG00000007057	srp54	100	98.810	ENSLBEG00000018690	srp54	100	98.810	Labrus_bergylta
ENSTRUG00000007057	srp54	100	98.810	ENSLBEG00000021122	srp54	100	98.810	Labrus_bergylta
ENSTRUG00000007057	srp54	100	95.238	ENSLACG00000017890	SRP54	100	95.238	Latimeria_chalumnae
ENSTRUG00000007057	srp54	100	97.222	ENSLOCG00000009440	srp54	100	97.222	Lepisosteus_oculatus
ENSTRUG00000007057	srp54	100	95.040	ENSLAFG00000012007	SRP54	100	95.040	Loxodonta_africana
ENSTRUG00000007057	srp54	100	95.040	ENSMFAG00000044371	SRP54	100	95.040	Macaca_fascicularis
ENSTRUG00000007057	srp54	100	95.040	ENSMMUG00000015073	FAM177A1	100	95.040	Macaca_mulatta
ENSTRUG00000007057	srp54	100	95.040	ENSMNEG00000006947	SRP54	100	95.040	Macaca_nemestrina
ENSTRUG00000007057	srp54	100	95.040	ENSMLEG00000042251	SRP54	100	95.040	Mandrillus_leucophaeus
ENSTRUG00000007057	srp54	100	98.810	ENSMAMG00000004803	srp54	100	98.810	Mastacembelus_armatus
ENSTRUG00000007057	srp54	100	98.810	ENSMZEG00005027528	srp54	100	98.810	Maylandia_zebra
ENSTRUG00000007057	srp54	100	90.316	ENSMGAG00000012481	SRP54	100	90.316	Meleagris_gallopavo
ENSTRUG00000007057	srp54	100	95.238	ENSMAUG00000014447	-	100	95.238	Mesocricetus_auratus
ENSTRUG00000007057	srp54	100	95.040	ENSMICG00000010270	SRP54	100	95.040	Microcebus_murinus
ENSTRUG00000007057	srp54	87	95.000	ENSMOCG00000000948	-	100	95.000	Microtus_ochrogaster
ENSTRUG00000007057	srp54	90	96.256	ENSMMOG00000020303	srp54	99	96.256	Mola_mola
ENSTRUG00000007057	srp54	100	95.040	ENSMODG00000012925	-	100	95.040	Monodelphis_domestica
ENSTRUG00000007057	srp54	100	95.040	ENSMODG00000023150	-	100	95.040	Monodelphis_domestica
ENSTRUG00000007057	srp54	88	98.420	ENSMALG00000009163	srp54	98	98.420	Monopterus_albus
ENSTRUG00000007057	srp54	100	95.238	MGP_CAROLIEiJ_G0017754	-	100	95.238	Mus_caroli
ENSTRUG00000007057	srp54	100	95.238	ENSMUSG00000073079	Srp54a	100	96.364	Mus_musculus
ENSTRUG00000007057	srp54	100	94.444	ENSMUSG00000079108	Srp54c	100	94.444	Mus_musculus
ENSTRUG00000007057	srp54	100	95.238	ENSMUSG00000112449	Srp54b	100	95.238	Mus_musculus
ENSTRUG00000007057	srp54	100	95.238	MGP_PahariEiJ_G0029510	-	100	95.238	Mus_pahari
ENSTRUG00000007057	srp54	100	95.040	ENSMPUG00000016302	SRP54	100	95.040	Mustela_putorius_furo
ENSTRUG00000007057	srp54	100	94.444	ENSMLUG00000008958	SRP54	100	94.444	Myotis_lucifugus
ENSTRUG00000007057	srp54	100	86.111	ENSNGAG00000019806	-	100	86.111	Nannospalax_galili
ENSTRUG00000007057	srp54	87	98.864	ENSNBRG00000006000	srp54	100	98.864	Neolamprologus_brichardi
ENSTRUG00000007057	srp54	100	95.040	ENSNLEG00000003496	SRP54	100	95.040	Nomascus_leucogenys
ENSTRUG00000007057	srp54	67	98.214	ENSMEUG00000000138	-	76	98.214	Notamacropus_eugenii
ENSTRUG00000007057	srp54	58	95.082	ENSOPRG00000014502	-	60	95.082	Ochotona_princeps
ENSTRUG00000007057	srp54	100	95.040	ENSODEG00000004865	SRP54	100	95.040	Octodon_degus
ENSTRUG00000007057	srp54	100	98.810	ENSONIG00000011768	srp54	100	98.810	Oreochromis_niloticus
ENSTRUG00000007057	srp54	100	95.040	ENSOANG00000014051	SRP54	100	95.040	Ornithorhynchus_anatinus
ENSTRUG00000007057	srp54	100	94.444	ENSOCUG00000007838	SRP54	100	94.444	Oryctolagus_cuniculus
ENSTRUG00000007057	srp54	100	99.008	ENSORLG00000010027	srp54	100	99.008	Oryzias_latipes
ENSTRUG00000007057	srp54	100	99.008	ENSORLG00020001878	srp54	100	99.008	Oryzias_latipes_hni
ENSTRUG00000007057	srp54	100	99.008	ENSORLG00015021866	srp54	100	99.008	Oryzias_latipes_hsok
ENSTRUG00000007057	srp54	100	99.206	ENSOMEG00000020952	srp54	100	99.206	Oryzias_melastigma
ENSTRUG00000007057	srp54	100	95.040	ENSOGAG00000012188	SRP54	100	95.040	Otolemur_garnettii
ENSTRUG00000007057	srp54	100	95.040	ENSOARG00000007160	SRP54	100	95.040	Ovis_aries
ENSTRUG00000007057	srp54	100	95.040	ENSPPAG00000017434	SRP54	100	95.040	Pan_paniscus
ENSTRUG00000007057	srp54	100	94.444	ENSPPRG00000014047	SRP54	100	94.444	Panthera_pardus
ENSTRUG00000007057	srp54	100	95.238	ENSPTIG00000000744	SRP54	96	95.238	Panthera_tigris_altaica
ENSTRUG00000007057	srp54	100	95.040	ENSPTRG00000006259	FAM177A1	100	95.040	Pan_troglodytes
ENSTRUG00000007057	srp54	100	95.040	ENSPANG00000023853	SRP54	100	95.040	Papio_anubis
ENSTRUG00000007057	srp54	100	97.222	ENSPKIG00000001953	srp54	100	97.222	Paramormyrops_kingsleyae
ENSTRUG00000007057	srp54	100	94.841	ENSPSIG00000006476	SRP54	100	94.841	Pelodiscus_sinensis
ENSTRUG00000007057	srp54	91	95.435	ENSPMGG00000004127	srp54	99	95.435	Periophthalmus_magnuspinnatus
ENSTRUG00000007057	srp54	100	83.135	ENSPEMG00000019634	-	100	83.135	Peromyscus_maniculatus_bairdii
ENSTRUG00000007057	srp54	100	89.683	ENSPMAG00000006078	-	100	89.683	Petromyzon_marinus
ENSTRUG00000007057	srp54	100	95.040	ENSPCIG00000016175	SRP54	100	95.040	Phascolarctos_cinereus
ENSTRUG00000007057	srp54	100	98.611	ENSPFOG00000008870	srp54	100	98.611	Poecilia_formosa
ENSTRUG00000007057	srp54	100	98.611	ENSPLAG00000009889	srp54	100	98.611	Poecilia_latipinna
ENSTRUG00000007057	srp54	100	98.611	ENSPMEG00000008601	srp54	100	98.611	Poecilia_mexicana
ENSTRUG00000007057	srp54	100	98.611	ENSPREG00000004505	srp54	100	98.611	Poecilia_reticulata
ENSTRUG00000007057	srp54	100	90.278	ENSPPYG00000005739	SRP54	100	90.278	Pongo_abelii
ENSTRUG00000007057	srp54	100	91.667	ENSPCAG00000006268	SRP54	100	91.667	Procavia_capensis
ENSTRUG00000007057	srp54	100	93.069	ENSPCOG00000022473	SRP54	100	93.069	Propithecus_coquereli
ENSTRUG00000007057	srp54	63	96.809	ENSPVAG00000010056	SRP54	82	96.809	Pteropus_vampyrus
ENSTRUG00000007057	srp54	100	98.810	ENSPNYG00000009717	srp54	100	98.810	Pundamilia_nyererei
ENSTRUG00000007057	srp54	100	97.421	ENSPNAG00000008544	srp54	100	97.421	Pygocentrus_nattereri
ENSTRUG00000007057	srp54	100	95.040	ENSRNOG00000032776	Srp54a	100	95.040	Rattus_norvegicus
ENSTRUG00000007057	srp54	100	95.040	ENSRROG00000041292	SRP54	100	95.040	Rhinopithecus_roxellana
ENSTRUG00000007057	srp54	86	51.474	YPR088C	SRP54	96	46.970	Saccharomyces_cerevisiae
ENSTRUG00000007057	srp54	94	94.726	ENSSBOG00000035145	SRP54	100	94.726	Saimiri_boliviensis_boliviensis
ENSTRUG00000007057	srp54	68	93.878	ENSSHAG00000000671	SRP54	100	93.878	Sarcophilus_harrisii
ENSTRUG00000007057	srp54	100	97.619	ENSSFOG00015013920	srp54	100	97.619	Scleropages_formosus
ENSTRUG00000007057	srp54	100	92.884	ENSSMAG00000002441	srp54	100	92.884	Scophthalmus_maximus
ENSTRUG00000007057	srp54	100	98.810	ENSSDUG00000018586	srp54	100	98.810	Seriola_dumerili
ENSTRUG00000007057	srp54	100	98.810	ENSSLDG00000010476	srp54	100	98.810	Seriola_lalandi_dorsalis
ENSTRUG00000007057	srp54	100	95.040	ENSSARG00000002744	SRP54	100	95.040	Sorex_araneus
ENSTRUG00000007057	srp54	100	95.040	ENSSPUG00000013101	SRP54	100	95.040	Sphenodon_punctatus
ENSTRUG00000007057	srp54	100	98.810	ENSSPAG00000002354	srp54	100	98.810	Stegastes_partitus
ENSTRUG00000007057	srp54	100	95.040	ENSSSCG00000001955	SRP54	100	95.040	Sus_scrofa
ENSTRUG00000007057	srp54	94	94.515	ENSTGUG00000011945	-	95	94.515	Taeniopygia_guttata
ENSTRUG00000007057	srp54	100	99.008	ENSTNIG00000002589	srp54	100	99.008	Tetraodon_nigroviridis
ENSTRUG00000007057	srp54	89	86.130	ENSTBEG00000011409	SRP54	100	86.130	Tupaia_belangeri
ENSTRUG00000007057	srp54	100	86.111	ENSTTRG00000000928	SRP54	100	86.111	Tursiops_truncatus
ENSTRUG00000007057	srp54	52	95.802	ENSUAMG00000012385	SRP54	100	95.802	Ursus_americanus
ENSTRUG00000007057	srp54	100	95.040	ENSUMAG00000011234	SRP54	100	95.040	Ursus_maritimus
ENSTRUG00000007057	srp54	94	94.726	ENSVPAG00000005668	SRP54	100	94.726	Vicugna_pacos
ENSTRUG00000007057	srp54	100	95.040	ENSVVUG00000019962	SRP54	100	95.040	Vulpes_vulpes
ENSTRUG00000007057	srp54	100	80.473	ENSXETG00000012290	srp54	100	80.473	Xenopus_tropicalis
ENSTRUG00000007057	srp54	88	98.646	ENSXCOG00000004658	srp54	96	98.646	Xiphophorus_couchianus
ENSTRUG00000007057	srp54	100	98.611	ENSXMAG00000018315	srp54	100	98.611	Xiphophorus_maculatus