EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000007121 (Gene tree)
Gene ID: 101062221
Gene Symbol: lsm12b
Alias: lsm12|wu:fe01f11|zgc:66039
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 4948 bases
Position: chr1:556101-561048
Accession: 101062221
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000017503	AD	PF09793.9	4e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000017577	-	1428	XM_003961005	ENSTRUP00000017503	196 (aa)	XP_003961054	H2SYL5

Gene Model

Click here to download ENSTRUG00000007121's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000007121's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000007121	lsm12b	100	84.184	ENSG00000161654	LSM12	100	84.184	Homo_sapiens
ENSTRUG00000007121	lsm12b	100	97.959	ENSAPOG00000007907	lsm12b	100	97.959	Acanthochromis_polyacanthus
ENSTRUG00000007121	lsm12b	100	82.412	ENSAMEG00000018321	LSM12	100	82.412	Ailuropoda_melanoleuca
ENSTRUG00000007121	lsm12b	100	96.429	ENSACIG00000008538	lsm12b	100	96.429	Amphilophus_citrinellus
ENSTRUG00000007121	lsm12b	100	98.469	ENSAOCG00000021847	lsm12b	88	98.469	Amphiprion_ocellaris
ENSTRUG00000007121	lsm12b	100	98.469	ENSAPEG00000002252	lsm12b	100	98.469	Amphiprion_percula
ENSTRUG00000007121	lsm12b	100	97.449	ENSATEG00000005705	lsm12b	100	97.449	Anabas_testudineus
ENSTRUG00000007121	lsm12b	100	83.673	ENSACAG00000004618	LSM12	100	83.673	Anolis_carolinensis
ENSTRUG00000007121	lsm12b	100	84.184	ENSANAG00000029011	LSM12	100	84.545	Aotus_nancymaae
ENSTRUG00000007121	lsm12b	100	96.939	ENSACLG00000026332	lsm12b	100	96.939	Astatotilapia_calliptera
ENSTRUG00000007121	lsm12b	100	85.204	ENSAMXG00000036117	lsm12a	91	85.204	Astyanax_mexicanus
ENSTRUG00000007121	lsm12b	100	92.857	ENSAMXG00000032952	lsm12b	100	92.857	Astyanax_mexicanus
ENSTRUG00000007121	lsm12b	100	84.184	ENSBTAG00000016252	LSM12	100	84.184	Bos_taurus
ENSTRUG00000007121	lsm12b	100	84.184	ENSCJAG00000048480	LSM12	100	84.545	Callithrix_jacchus
ENSTRUG00000007121	lsm12b	100	84.184	ENSCAFG00000014379	LSM12	92	84.184	Canis_familiaris
ENSTRUG00000007121	lsm12b	100	84.184	ENSCAFG00020012173	LSM12	100	84.184	Canis_lupus_dingo
ENSTRUG00000007121	lsm12b	100	84.184	ENSCHIG00000018175	LSM12	100	84.184	Capra_hircus
ENSTRUG00000007121	lsm12b	100	84.184	ENSTSYG00000036361	LSM12	100	84.184	Carlito_syrichta
ENSTRUG00000007121	lsm12b	83	79.630	ENSCAPG00000009647	LSM12	89	79.630	Cavia_aperea
ENSTRUG00000007121	lsm12b	100	83.163	ENSCPOG00000012860	LSM12	100	83.636	Cavia_porcellus
ENSTRUG00000007121	lsm12b	100	84.184	ENSCCAG00000032905	LSM12	100	84.545	Cebus_capucinus
ENSTRUG00000007121	lsm12b	100	84.184	ENSCATG00000030577	-	100	84.545	Cercocebus_atys
ENSTRUG00000007121	lsm12b	100	83.673	ENSCLAG00000015759	LSM12	100	83.673	Chinchilla_lanigera
ENSTRUG00000007121	lsm12b	100	84.694	ENSCSAG00000003486	LSM12	100	84.694	Chlorocebus_sabaeus
ENSTRUG00000007121	lsm12b	56	84.404	ENSCHOG00000001198	LSM12	100	84.404	Choloepus_hoffmanni
ENSTRUG00000007121	lsm12b	100	84.694	ENSCPBG00000027105	LSM12	100	84.694	Chrysemys_picta_bellii
ENSTRUG00000007121	lsm12b	100	84.184	ENSCANG00000043328	LSM12	100	84.545	Colobus_angolensis_palliatus
ENSTRUG00000007121	lsm12b	100	84.184	ENSCGRG00001002094	Lsm12	100	84.545	Cricetulus_griseus_chok1gshd
ENSTRUG00000007121	lsm12b	89	75.862	ENSCGRG00000004316	Lsm12	98	75.862	Cricetulus_griseus_crigri
ENSTRUG00000007121	lsm12b	100	96.939	ENSCSEG00000008434	lsm12b	100	96.939	Cynoglossus_semilaevis
ENSTRUG00000007121	lsm12b	100	96.429	ENSCVAG00000008755	lsm12b	100	96.429	Cyprinodon_variegatus
ENSTRUG00000007121	lsm12b	100	86.224	ENSDARG00000028848	lsm12a	100	86.224	Danio_rerio
ENSTRUG00000007121	lsm12b	100	93.878	ENSDARG00000109510	lsm12b	100	93.878	Danio_rerio
ENSTRUG00000007121	lsm12b	100	84.184	ENSDNOG00000002418	LSM12	91	84.184	Dasypus_novemcinctus
ENSTRUG00000007121	lsm12b	100	84.184	ENSDORG00000016381	Lsm12	100	84.545	Dipodomys_ordii
ENSTRUG00000007121	lsm12b	73	32.911	FBgn0036057	CG14164	83	32.911	Drosophila_melanogaster
ENSTRUG00000007121	lsm12b	83	33.133	FBgn0030364	Lsm12	76	33.133	Drosophila_melanogaster
ENSTRUG00000007121	lsm12b	88	75.145	ENSETEG00000011012	-	99	75.145	Echinops_telfairi
ENSTRUG00000007121	lsm12b	100	83.673	ENSETEG00000008374	LSM12	100	83.673	Echinops_telfairi
ENSTRUG00000007121	lsm12b	85	66.467	ENSEBUG00000016299	lsm12a	92	66.467	Eptatretus_burgeri
ENSTRUG00000007121	lsm12b	100	84.184	ENSEASG00005010155	LSM12	100	84.184	Equus_asinus_asinus
ENSTRUG00000007121	lsm12b	100	84.184	ENSECAG00000009071	LSM12	100	84.545	Equus_caballus
ENSTRUG00000007121	lsm12b	78	83.660	ENSEEUG00000002419	-	100	83.660	Erinaceus_europaeus
ENSTRUG00000007121	lsm12b	100	92.347	ENSELUG00000000256	-	100	92.347	Esox_lucius
ENSTRUG00000007121	lsm12b	100	95.918	ENSELUG00000015538	lsm12b	100	91.327	Esox_lucius
ENSTRUG00000007121	lsm12b	100	84.184	ENSFCAG00000037021	LSM12	100	84.184	Felis_catus
ENSTRUG00000007121	lsm12b	80	80.128	ENSFDAG00000008954	LSM12	91	80.128	Fukomys_damarensis
ENSTRUG00000007121	lsm12b	100	96.429	ENSFHEG00000019913	lsm12b	100	96.429	Fundulus_heteroclitus
ENSTRUG00000007121	lsm12b	81	96.835	ENSGMOG00000015449	lsm12b	100	96.835	Gadus_morhua
ENSTRUG00000007121	lsm12b	78	84.967	ENSGALG00000039803	LSM12	100	84.967	Gallus_gallus
ENSTRUG00000007121	lsm12b	100	96.429	ENSGAFG00000011829	lsm12b	100	96.429	Gambusia_affinis
ENSTRUG00000007121	lsm12b	81	98.734	ENSGACG00000003428	lsm12b	100	98.734	Gasterosteus_aculeatus
ENSTRUG00000007121	lsm12b	100	83.673	ENSGAGG00000021965	LSM12	100	83.673	Gopherus_agassizii
ENSTRUG00000007121	lsm12b	100	84.184	ENSGGOG00000010589	-	100	84.545	Gorilla_gorilla
ENSTRUG00000007121	lsm12b	85	96.407	ENSHBUG00000007667	lsm12b	74	96.407	Haplochromis_burtoni
ENSTRUG00000007121	lsm12b	100	84.184	ENSHGLG00000011411	LSM12	100	84.545	Heterocephalus_glaber_female
ENSTRUG00000007121	lsm12b	79	83.117	ENSHGLG00100000241	LSM12	82	83.117	Heterocephalus_glaber_male
ENSTRUG00000007121	lsm12b	100	94.388	ENSHCOG00000002094	lsm12b	100	94.388	Hippocampus_comes
ENSTRUG00000007121	lsm12b	100	93.367	ENSIPUG00000014800	lsm12	100	93.367	Ictalurus_punctatus
ENSTRUG00000007121	lsm12b	99	84.021	ENSIPUG00000008936	lsm12a	99	84.021	Ictalurus_punctatus
ENSTRUG00000007121	lsm12b	100	84.184	ENSSTOG00000007403	LSM12	100	84.545	Ictidomys_tridecemlineatus
ENSTRUG00000007121	lsm12b	80	71.698	ENSJJAG00000014652	-	95	71.698	Jaculus_jaculus
ENSTRUG00000007121	lsm12b	100	83.163	ENSJJAG00000004364	-	100	83.636	Jaculus_jaculus
ENSTRUG00000007121	lsm12b	96	74.737	ENSJJAG00000011793	-	100	74.737	Jaculus_jaculus
ENSTRUG00000007121	lsm12b	85	95.808	ENSKMAG00000007704	lsm12b	56	95.808	Kryptolebias_marmoratus
ENSTRUG00000007121	lsm12b	100	97.959	ENSLBEG00000027999	lsm12b	100	97.959	Labrus_bergylta
ENSTRUG00000007121	lsm12b	100	86.735	ENSLACG00000015981	LSM12	100	86.735	Latimeria_chalumnae
ENSTRUG00000007121	lsm12b	100	91.327	ENSLOCG00000013079	lsm12b	99	91.327	Lepisosteus_oculatus
ENSTRUG00000007121	lsm12b	100	84.184	ENSLAFG00000005202	LSM12	100	84.184	Loxodonta_africana
ENSTRUG00000007121	lsm12b	100	84.184	ENSMFAG00000031376	LSM12	100	84.545	Macaca_fascicularis
ENSTRUG00000007121	lsm12b	100	84.184	ENSMMUG00000006804	LSM12	100	84.545	Macaca_mulatta
ENSTRUG00000007121	lsm12b	65	73.563	ENSMMUG00000042106	-	100	73.563	Macaca_mulatta
ENSTRUG00000007121	lsm12b	100	84.184	ENSMNEG00000030594	-	100	84.545	Macaca_nemestrina
ENSTRUG00000007121	lsm12b	100	84.184	ENSMLEG00000039934	LSM12	100	84.545	Mandrillus_leucophaeus
ENSTRUG00000007121	lsm12b	100	97.959	ENSMAMG00000004279	lsm12b	100	97.959	Mastacembelus_armatus
ENSTRUG00000007121	lsm12b	100	96.939	ENSMZEG00005005754	lsm12b	100	96.939	Maylandia_zebra
ENSTRUG00000007121	lsm12b	100	84.694	ENSMICG00000037219	LSM12	100	85.455	Microcebus_murinus
ENSTRUG00000007121	lsm12b	100	71.939	ENSMOCG00000017015	-	86	71.939	Microtus_ochrogaster
ENSTRUG00000007121	lsm12b	100	84.184	ENSMOCG00000019878	-	100	84.545	Microtus_ochrogaster
ENSTRUG00000007121	lsm12b	100	97.959	ENSMMOG00000020848	lsm12b	100	97.959	Mola_mola
ENSTRUG00000007121	lsm12b	100	97.959	ENSMALG00000007578	lsm12b	100	97.959	Monopterus_albus
ENSTRUG00000007121	lsm12b	100	83.673	MGP_CAROLIEiJ_G0017241	Lsm12	100	83.673	Mus_caroli
ENSTRUG00000007121	lsm12b	100	84.184	ENSMUSG00000020922	Lsm12	100	84.545	Mus_musculus
ENSTRUG00000007121	lsm12b	100	77.465	MGP_PahariEiJ_G0018371	Lsm12	100	84.545	Mus_pahari
ENSTRUG00000007121	lsm12b	100	83.673	MGP_SPRETEiJ_G0018084	Lsm12	99	85.185	Mus_spretus
ENSTRUG00000007121	lsm12b	100	84.694	ENSMLUG00000006391	LSM12	100	84.694	Myotis_lucifugus
ENSTRUG00000007121	lsm12b	100	84.184	ENSNGAG00000001870	Lsm12	100	84.545	Nannospalax_galili
ENSTRUG00000007121	lsm12b	100	58.621	ENSNGAG00000015429	-	100	58.621	Nannospalax_galili
ENSTRUG00000007121	lsm12b	100	96.939	ENSNBRG00000006266	lsm12b	100	96.939	Neolamprologus_brichardi
ENSTRUG00000007121	lsm12b	100	84.184	ENSNLEG00000005580	-	100	84.545	Nomascus_leucogenys
ENSTRUG00000007121	lsm12b	85	83.735	ENSMEUG00000007501	-	100	83.735	Notamacropus_eugenii
ENSTRUG00000007121	lsm12b	100	84.184	ENSOPRG00000008552	LSM12	100	84.184	Ochotona_princeps
ENSTRUG00000007121	lsm12b	100	76.531	ENSODEG00000007886	-	74	76.531	Octodon_degus
ENSTRUG00000007121	lsm12b	99	84.021	ENSODEG00000017998	-	99	85.455	Octodon_degus
ENSTRUG00000007121	lsm12b	100	96.939	ENSONIG00000007933	lsm12b	100	96.939	Oreochromis_niloticus
ENSTRUG00000007121	lsm12b	99	79.487	ENSOCUG00000027889	-	100	79.487	Oryctolagus_cuniculus
ENSTRUG00000007121	lsm12b	100	82.412	ENSOCUG00000008566	-	100	82.412	Oryctolagus_cuniculus
ENSTRUG00000007121	lsm12b	99	78.974	ENSOCUG00000021254	-	100	78.974	Oryctolagus_cuniculus
ENSTRUG00000007121	lsm12b	99	78.462	ENSOCUG00000024823	-	100	78.462	Oryctolagus_cuniculus
ENSTRUG00000007121	lsm12b	100	96.429	ENSORLG00000011310	lsm12b	100	96.429	Oryzias_latipes
ENSTRUG00000007121	lsm12b	100	96.429	ENSORLG00020002060	lsm12b	92	96.429	Oryzias_latipes_hni
ENSTRUG00000007121	lsm12b	100	96.429	ENSORLG00015001647	lsm12b	92	96.429	Oryzias_latipes_hsok
ENSTRUG00000007121	lsm12b	100	97.449	ENSOMEG00000006184	lsm12b	92	97.449	Oryzias_melastigma
ENSTRUG00000007121	lsm12b	100	84.694	ENSOGAG00000010489	LSM12	100	84.694	Otolemur_garnettii
ENSTRUG00000007121	lsm12b	100	81.188	ENSOARG00000006589	LSM12	100	81.188	Ovis_aries
ENSTRUG00000007121	lsm12b	100	74.490	ENSPPAG00000034974	-	100	74.490	Pan_paniscus
ENSTRUG00000007121	lsm12b	100	84.184	ENSPPRG00000023420	LSM12	100	84.184	Panthera_pardus
ENSTRUG00000007121	lsm12b	72	82.727	ENSPTIG00000014850	-	100	82.727	Panthera_tigris_altaica
ENSTRUG00000007121	lsm12b	78	83.660	ENSPTIG00000012704	-	82	83.660	Panthera_tigris_altaica
ENSTRUG00000007121	lsm12b	100	84.184	ENSPTRG00000009261	LSM12	100	84.545	Pan_troglodytes
ENSTRUG00000007121	lsm12b	100	84.184	ENSPANG00000021315	-	100	84.545	Papio_anubis
ENSTRUG00000007121	lsm12b	100	92.857	ENSPKIG00000021058	lsm12b	100	92.857	Paramormyrops_kingsleyae
ENSTRUG00000007121	lsm12b	100	83.673	ENSPKIG00000017932	-	100	83.673	Paramormyrops_kingsleyae
ENSTRUG00000007121	lsm12b	100	96.939	ENSPMGG00000021344	lsm12b	100	96.939	Periophthalmus_magnuspinnatus
ENSTRUG00000007121	lsm12b	100	84.184	ENSPEMG00000012199	Lsm12	100	84.545	Peromyscus_maniculatus_bairdii
ENSTRUG00000007121	lsm12b	89	68.000	ENSPMAG00000005461	lsm12a	99	68.000	Petromyzon_marinus
ENSTRUG00000007121	lsm12b	100	84.184	ENSPCIG00000020244	LSM12	100	84.184	Phascolarctos_cinereus
ENSTRUG00000007121	lsm12b	100	95.408	ENSPFOG00000015930	lsm12b	100	95.408	Poecilia_formosa
ENSTRUG00000007121	lsm12b	100	95.408	ENSPLAG00000021089	lsm12b	100	95.408	Poecilia_latipinna
ENSTRUG00000007121	lsm12b	100	95.408	ENSPMEG00000012961	lsm12b	100	95.408	Poecilia_mexicana
ENSTRUG00000007121	lsm12b	87	96.491	ENSPREG00000010236	lsm12b	95	96.491	Poecilia_reticulata
ENSTRUG00000007121	lsm12b	100	84.184	ENSPPYG00000008344	LSM12	100	84.184	Pongo_abelii
ENSTRUG00000007121	lsm12b	81	84.277	ENSPCAG00000008790	LSM12	100	84.277	Procavia_capensis
ENSTRUG00000007121	lsm12b	100	84.184	ENSPCOG00000027951	LSM12	100	84.545	Propithecus_coquereli
ENSTRUG00000007121	lsm12b	100	84.694	ENSPVAG00000013706	LSM12	100	84.694	Pteropus_vampyrus
ENSTRUG00000007121	lsm12b	100	96.939	ENSPNYG00000003386	lsm12b	100	96.939	Pundamilia_nyererei
ENSTRUG00000007121	lsm12b	100	93.367	ENSPNAG00000004186	lsm12b	100	93.367	Pygocentrus_nattereri
ENSTRUG00000007121	lsm12b	100	84.184	ENSPNAG00000018435	lsm12a	100	84.184	Pygocentrus_nattereri
ENSTRUG00000007121	lsm12b	100	84.184	ENSRNOG00000020894	Lsm12	100	84.184	Rattus_norvegicus
ENSTRUG00000007121	lsm12b	100	84.184	ENSRBIG00000027910	LSM12	100	84.545	Rhinopithecus_bieti
ENSTRUG00000007121	lsm12b	100	84.184	ENSRROG00000045530	-	100	84.545	Rhinopithecus_roxellana
ENSTRUG00000007121	lsm12b	99	53.093	ENSRROG00000000537	-	99	53.093	Rhinopithecus_roxellana
ENSTRUG00000007121	lsm12b	100	84.184	ENSSBOG00000025310	LSM12	100	84.545	Saimiri_boliviensis_boliviensis
ENSTRUG00000007121	lsm12b	81	82.278	ENSSHAG00000014914	LSM12	100	82.278	Sarcophilus_harrisii
ENSTRUG00000007121	lsm12b	100	94.388	ENSSFOG00015009612	lsm12	100	94.388	Scleropages_formosus
ENSTRUG00000007121	lsm12b	100	92.857	ENSSFOG00015020392	lsm12a	100	92.857	Scleropages_formosus
ENSTRUG00000007121	lsm12b	100	97.959	ENSSMAG00000008089	lsm12b	100	97.959	Scophthalmus_maximus
ENSTRUG00000007121	lsm12b	100	97.959	ENSSDUG00000012711	lsm12b	100	97.959	Seriola_dumerili
ENSTRUG00000007121	lsm12b	100	97.959	ENSSLDG00000007404	lsm12b	100	97.959	Seriola_lalandi_dorsalis
ENSTRUG00000007121	lsm12b	78	83.007	ENSSARG00000005537	LSM12	100	83.007	Sorex_araneus
ENSTRUG00000007121	lsm12b	100	84.694	ENSSPUG00000011984	LSM12	100	84.694	Sphenodon_punctatus
ENSTRUG00000007121	lsm12b	100	98.469	ENSSPAG00000017058	lsm12b	100	98.469	Stegastes_partitus
ENSTRUG00000007121	lsm12b	100	84.184	ENSSSCG00000032394	LSM12	100	84.184	Sus_scrofa
ENSTRUG00000007121	lsm12b	100	96.939	ENSTNIG00000014436	lsm12b	100	96.939	Tetraodon_nigroviridis
ENSTRUG00000007121	lsm12b	100	81.633	ENSTBEG00000012392	-	100	81.633	Tupaia_belangeri
ENSTRUG00000007121	lsm12b	100	83.673	ENSTBEG00000012523	-	100	83.673	Tupaia_belangeri
ENSTRUG00000007121	lsm12b	100	84.184	ENSTTRG00000010433	LSM12	100	84.184	Tursiops_truncatus
ENSTRUG00000007121	lsm12b	100	84.184	ENSUAMG00000006313	LSM12	100	84.184	Ursus_americanus
ENSTRUG00000007121	lsm12b	81	81.013	ENSUMAG00000012987	LSM12	90	81.013	Ursus_maritimus
ENSTRUG00000007121	lsm12b	100	79.592	ENSVPAG00000011145	LSM12	100	79.592	Vicugna_pacos
ENSTRUG00000007121	lsm12b	100	84.184	ENSVVUG00000017581	LSM12	100	84.184	Vulpes_vulpes
ENSTRUG00000007121	lsm12b	82	60.625	ENSXETG00000003371	lsm12	77	60.625	Xenopus_tropicalis
ENSTRUG00000007121	lsm12b	100	96.429	ENSXCOG00000003994	lsm12b	100	96.429	Xiphophorus_couchianus
ENSTRUG00000007121	lsm12b	100	96.429	ENSXMAG00000020950	lsm12b	100	96.429	Xiphophorus_maculatus