EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000007519 (Gene tree)
Gene ID: 101067492
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 8555 bases
Position: chr18:1722959-1731513
Accession: 101067492
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000018623	Upf2	PF04050.14	1.2e-32	1	1
ENSTRUP00000018623	MIF4G	PF02854.19	3.3e-73	1	3
ENSTRUP00000018623	MIF4G	PF02854.19	3.3e-73	2	3
ENSTRUP00000018623	MIF4G	PF02854.19	3.3e-73	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000018699	UPF2-201	3906	XM_003972727	ENSTRUP00000018623	1287 (aa)	XP_003972776	H2T1T5

Gene Model

Click here to download ENSTRUG00000007519's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03013	RNA transport	KEGG
tru03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000007519's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000007519	UPF2	99	81.995	ENSG00000151461	UPF2	100	81.634	Homo_sapiens
ENSTRUG00000007519	UPF2	99	88.323	ENSAPOG00000015837	UPF2	100	87.931	Acanthochromis_polyacanthus
ENSTRUG00000007519	UPF2	99	82.527	ENSAMEG00000004586	UPF2	100	82.555	Ailuropoda_melanoleuca
ENSTRUG00000007519	UPF2	99	93.887	ENSACIG00000018078	UPF2	100	93.887	Amphilophus_citrinellus
ENSTRUG00000007519	UPF2	99	93.505	ENSAOCG00000016766	UPF2	100	93.349	Amphiprion_ocellaris
ENSTRUG00000007519	UPF2	99	93.584	ENSAPEG00000019084	UPF2	100	93.427	Amphiprion_percula
ENSTRUG00000007519	UPF2	99	93.901	ENSATEG00000021677	UPF2	99	93.901	Anabas_testudineus
ENSTRUG00000007519	UPF2	99	78.098	ENSAPLG00000010287	UPF2	90	82.373	Anas_platyrhynchos
ENSTRUG00000007519	UPF2	99	82.449	ENSACAG00000009259	UPF2	100	82.321	Anolis_carolinensis
ENSTRUG00000007519	UPF2	97	76.160	ENSANAG00000028451	UPF2	93	78.693	Aotus_nancymaae
ENSTRUG00000007519	UPF2	99	93.740	ENSACLG00000012696	UPF2	100	93.740	Astatotilapia_calliptera
ENSTRUG00000007519	UPF2	99	87.656	ENSAMXG00000013700	UPF2	99	87.500	Astyanax_mexicanus
ENSTRUG00000007519	UPF2	99	82.215	ENSBTAG00000000288	UPF2	100	82.243	Bos_taurus
ENSTRUG00000007519	UPF2	99	81.747	ENSCJAG00000020685	UPF2	100	81.075	Callithrix_jacchus
ENSTRUG00000007519	UPF2	99	82.527	ENSCAFG00000004839	UPF2	100	82.555	Canis_familiaris
ENSTRUG00000007519	UPF2	94	84.848	ENSCAFG00020005882	UPF2	100	84.500	Canis_lupus_dingo
ENSTRUG00000007519	UPF2	99	82.059	ENSCHIG00000020359	UPF2	100	82.087	Capra_hircus
ENSTRUG00000007519	UPF2	99	82.215	ENSTSYG00000000935	UPF2	100	82.243	Carlito_syrichta
ENSTRUG00000007519	UPF2	91	74.552	ENSCAPG00000016658	UPF2	95	74.131	Cavia_aperea
ENSTRUG00000007519	UPF2	98	79.717	ENSCPOG00000008809	UPF2	100	79.749	Cavia_porcellus
ENSTRUG00000007519	UPF2	99	75.585	ENSCCAG00000035991	UPF2	100	75.000	Cebus_capucinus
ENSTRUG00000007519	UPF2	99	82.151	ENSCATG00000032679	UPF2	100	81.790	Cercocebus_atys
ENSTRUG00000007519	UPF2	99	81.655	ENSCLAG00000011434	UPF2	100	81.684	Chinchilla_lanigera
ENSTRUG00000007519	UPF2	99	82.151	ENSCSAG00000013372	UPF2	100	81.790	Chlorocebus_sabaeus
ENSTRUG00000007519	UPF2	78	88.889	ENSCHOG00000000422	UPF2	80	91.101	Choloepus_hoffmanni
ENSTRUG00000007519	UPF2	99	80.516	ENSCPBG00000027823	UPF2	100	80.938	Chrysemys_picta_bellii
ENSTRUG00000007519	UPF2	78	48.728	ENSCSAVG00000007772	-	99	47.941	Ciona_savignyi
ENSTRUG00000007519	UPF2	99	76.995	ENSCANG00000040396	UPF2	100	76.989	Colobus_angolensis_palliatus
ENSTRUG00000007519	UPF2	99	82.059	ENSCGRG00001019347	Upf2	100	82.009	Cricetulus_griseus_chok1gshd
ENSTRUG00000007519	UPF2	99	82.059	ENSCGRG00000017993	Upf2	100	82.009	Cricetulus_griseus_crigri
ENSTRUG00000007519	UPF2	99	83.112	ENSCSEG00000003520	UPF2	99	83.881	Cynoglossus_semilaevis
ENSTRUG00000007519	UPF2	98	91.798	ENSCVAG00000006167	UPF2	100	91.325	Cyprinodon_variegatus
ENSTRUG00000007519	UPF2	99	82.215	ENSDNOG00000018160	UPF2	100	82.243	Dasypus_novemcinctus
ENSTRUG00000007519	UPF2	99	82.137	ENSDORG00000002478	Upf2	100	82.165	Dipodomys_ordii
ENSTRUG00000007519	UPF2	72	92.647	ENSETEG00000011583	-	62	92.647	Echinops_telfairi
ENSTRUG00000007519	UPF2	64	70.861	ENSEBUG00000012448	-	93	69.208	Eptatretus_burgeri
ENSTRUG00000007519	UPF2	99	81.733	ENSEASG00005019274	UPF2	100	81.216	Equus_asinus_asinus
ENSTRUG00000007519	UPF2	99	81.733	ENSECAG00000017022	UPF2	100	81.761	Equus_caballus
ENSTRUG00000007519	UPF2	81	74.062	ENSEEUG00000007819	UPF2	74	74.281	Erinaceus_europaeus
ENSTRUG00000007519	UPF2	99	86.583	ENSELUG00000012014	UPF2	100	87.832	Esox_lucius
ENSTRUG00000007519	UPF2	99	84.153	ENSFCAG00000005785	UPF2	100	82.477	Felis_catus
ENSTRUG00000007519	UPF2	99	82.572	ENSFALG00000001889	UPF2	98	82.494	Ficedula_albicollis
ENSTRUG00000007519	UPF2	99	81.187	ENSFDAG00000014348	UPF2	100	81.187	Fukomys_damarensis
ENSTRUG00000007519	UPF2	98	91.871	ENSFHEG00000009826	UPF2	100	91.555	Fundulus_heteroclitus
ENSTRUG00000007519	UPF2	90	88.352	ENSGMOG00000005557	UPF2	100	86.781	Gadus_morhua
ENSTRUG00000007519	UPF2	99	83.009	ENSGALG00000033772	UPF2	100	82.737	Gallus_gallus
ENSTRUG00000007519	UPF2	99	91.236	ENSGAFG00000020867	UPF2	100	90.923	Gambusia_affinis
ENSTRUG00000007519	UPF2	99	90.888	ENSGACG00000001080	UPF2	100	91.335	Gasterosteus_aculeatus
ENSTRUG00000007519	UPF2	99	81.903	ENSGAGG00000002700	UPF2	100	81.620	Gopherus_agassizii
ENSTRUG00000007519	UPF2	99	81.995	ENSGGOG00000001479	UPF2	100	81.634	Gorilla_gorilla
ENSTRUG00000007519	UPF2	99	93.809	ENSHBUG00000004249	UPF2	100	93.809	Haplochromis_burtoni
ENSTRUG00000007519	UPF2	99	81.187	ENSHGLG00000015176	-	100	81.216	Heterocephalus_glaber_female
ENSTRUG00000007519	UPF2	99	72.400	ENSHGLG00000003822	-	99	72.478	Heterocephalus_glaber_female
ENSTRUG00000007519	UPF2	99	78.890	ENSHGLG00100010036	UPF2	100	78.845	Heterocephalus_glaber_male
ENSTRUG00000007519	UPF2	100	89.490	ENSHCOG00000004025	UPF2	100	89.490	Hippocampus_comes
ENSTRUG00000007519	UPF2	99	86.984	ENSIPUG00000015524	UPF2	100	86.427	Ictalurus_punctatus
ENSTRUG00000007519	UPF2	99	82.137	ENSSTOG00000013075	UPF2	100	81.931	Ictidomys_tridecemlineatus
ENSTRUG00000007519	UPF2	99	79.235	ENSJJAG00000004913	Upf2	100	81.591	Jaculus_jaculus
ENSTRUG00000007519	UPF2	98	92.350	ENSKMAG00000001071	UPF2	100	92.350	Kryptolebias_marmoratus
ENSTRUG00000007519	UPF2	79	90.597	ENSLBEG00000000728	-	93	91.296	Labrus_bergylta
ENSTRUG00000007519	UPF2	100	92.940	ENSLBEG00000016394	-	100	92.940	Labrus_bergylta
ENSTRUG00000007519	UPF2	99	76.815	ENSLACG00000015945	UPF2	100	76.893	Latimeria_chalumnae
ENSTRUG00000007519	UPF2	98	87.874	ENSLOCG00000015698	UPF2	100	87.480	Lepisosteus_oculatus
ENSTRUG00000007519	UPF2	99	82.151	ENSMFAG00000043865	UPF2	100	81.790	Macaca_fascicularis
ENSTRUG00000007519	UPF2	99	82.151	ENSMMUG00000008241	UPF2	100	81.790	Macaca_mulatta
ENSTRUG00000007519	UPF2	79	82.910	ENSMNEG00000008062	UPF2	99	82.422	Macaca_nemestrina
ENSTRUG00000007519	UPF2	99	80.109	ENSMLEG00000036120	UPF2	100	79.657	Mandrillus_leucophaeus
ENSTRUG00000007519	UPF2	99	92.958	ENSMAMG00000018276	UPF2	100	91.706	Mastacembelus_armatus
ENSTRUG00000007519	UPF2	99	93.740	ENSMZEG00005021595	UPF2	100	93.740	Maylandia_zebra
ENSTRUG00000007519	UPF2	99	82.381	ENSMGAG00000004573	UPF2	99	82.109	Meleagris_gallopavo
ENSTRUG00000007519	UPF2	99	80.109	ENSMAUG00000016512	Upf2	100	80.062	Mesocricetus_auratus
ENSTRUG00000007519	UPF2	94	84.848	ENSMICG00000001716	UPF2	100	78.159	Microcebus_murinus
ENSTRUG00000007519	UPF2	99	81.109	ENSMOCG00000008263	Upf2	100	81.216	Microtus_ochrogaster
ENSTRUG00000007519	UPF2	99	89.734	ENSMMOG00000006528	UPF2	100	89.107	Mola_mola
ENSTRUG00000007519	UPF2	99	80.031	ENSMODG00000016794	UPF2	100	82.087	Monodelphis_domestica
ENSTRUG00000007519	UPF2	99	91.850	ENSMALG00000002663	UPF2	100	91.223	Monopterus_albus
ENSTRUG00000007519	UPF2	99	81.747	MGP_CAROLIEiJ_G0023157	Upf2	99	84.069	Mus_caroli
ENSTRUG00000007519	UPF2	99	82.059	ENSMUSG00000043241	Upf2	99	83.146	Mus_musculus
ENSTRUG00000007519	UPF2	99	82.137	MGP_PahariEiJ_G0019217	Upf2	100	83.146	Mus_pahari
ENSTRUG00000007519	UPF2	99	82.293	MGP_SPRETEiJ_G0024075	Upf2	100	83.146	Mus_spretus
ENSTRUG00000007519	UPF2	99	82.449	ENSMPUG00000001064	UPF2	100	82.477	Mustela_putorius_furo
ENSTRUG00000007519	UPF2	99	81.669	ENSMLUG00000000228	UPF2	100	81.804	Myotis_lucifugus
ENSTRUG00000007519	UPF2	99	93.818	ENSNBRG00000013629	UPF2	100	93.818	Neolamprologus_brichardi
ENSTRUG00000007519	UPF2	99	82.073	ENSNLEG00000012058	UPF2	100	81.712	Nomascus_leucogenys
ENSTRUG00000007519	UPF2	72	93.662	ENSOPRG00000006801	-	73	93.662	Ochotona_princeps
ENSTRUG00000007519	UPF2	99	81.464	ENSODEG00000001290	UPF2	100	81.386	Octodon_degus
ENSTRUG00000007519	UPF2	99	93.662	ENSONIG00000017991	UPF2	100	93.662	Oreochromis_niloticus
ENSTRUG00000007519	UPF2	99	81.012	ENSOCUG00000006230	UPF2	100	80.109	Oryctolagus_cuniculus
ENSTRUG00000007519	UPF2	99	89.977	ENSORLG00000017189	UPF2	100	90.211	Oryzias_latipes
ENSTRUG00000007519	UPF2	99	89.977	ENSORLG00020005969	UPF2	100	90.211	Oryzias_latipes_hni
ENSTRUG00000007519	UPF2	99	89.977	ENSORLG00015005713	UPF2	100	90.211	Oryzias_latipes_hsok
ENSTRUG00000007519	UPF2	99	86.892	ENSOMEG00000023420	UPF2	98	86.892	Oryzias_melastigma
ENSTRUG00000007519	UPF2	99	81.981	ENSOGAG00000005796	UPF2	100	81.620	Otolemur_garnettii
ENSTRUG00000007519	UPF2	99	81.931	ENSOARG00000014587	UPF2	100	81.960	Ovis_aries
ENSTRUG00000007519	UPF2	99	79.563	ENSPPAG00000037953	UPF2	100	79.034	Pan_paniscus
ENSTRUG00000007519	UPF2	99	82.449	ENSPPRG00000000690	UPF2	100	82.477	Panthera_pardus
ENSTRUG00000007519	UPF2	99	82.449	ENSPTIG00000008867	UPF2	100	82.477	Panthera_tigris_altaica
ENSTRUG00000007519	UPF2	99	81.995	ENSPTRG00000002291	UPF2	100	81.634	Pan_troglodytes
ENSTRUG00000007519	UPF2	99	82.151	ENSPANG00000023399	UPF2	100	81.790	Papio_anubis
ENSTRUG00000007519	UPF2	99	86.875	ENSPKIG00000025502	UPF2	100	85.469	Paramormyrops_kingsleyae
ENSTRUG00000007519	UPF2	59	80.261	ENSPSIG00000015158	UPF2	95	80.581	Pelodiscus_sinensis
ENSTRUG00000007519	UPF2	99	88.776	ENSPMGG00000005259	UPF2	100	88.697	Periophthalmus_magnuspinnatus
ENSTRUG00000007519	UPF2	92	75.652	ENSPEMG00000015731	Upf2	99	75.652	Peromyscus_maniculatus_bairdii
ENSTRUG00000007519	UPF2	99	81.946	ENSPCIG00000006656	UPF2	100	82.023	Phascolarctos_cinereus
ENSTRUG00000007519	UPF2	99	91.471	ENSPFOG00000017118	UPF2	100	91.158	Poecilia_formosa
ENSTRUG00000007519	UPF2	99	91.549	ENSPLAG00000005094	UPF2	100	91.236	Poecilia_latipinna
ENSTRUG00000007519	UPF2	99	91.393	ENSPMEG00000017009	UPF2	100	91.080	Poecilia_mexicana
ENSTRUG00000007519	UPF2	99	90.517	ENSPREG00000021880	UPF2	100	90.517	Poecilia_reticulata
ENSTRUG00000007519	UPF2	65	84.379	ENSPPYG00000002089	-	100	84.497	Pongo_abelii
ENSTRUG00000007519	UPF2	99	69.969	ENSPCAG00000000684	UPF2	100	69.969	Procavia_capensis
ENSTRUG00000007519	UPF2	99	75.604	ENSPVAG00000017286	UPF2	100	75.642	Pteropus_vampyrus
ENSTRUG00000007519	UPF2	99	91.379	ENSPNYG00000017096	UPF2	100	91.379	Pundamilia_nyererei
ENSTRUG00000007519	UPF2	99	87.285	ENSPNAG00000009357	UPF2	100	86.516	Pygocentrus_nattereri
ENSTRUG00000007519	UPF2	99	78.149	ENSRNOG00000023593	Upf2	100	94.444	Rattus_norvegicus
ENSTRUG00000007519	UPF2	99	80.938	ENSRBIG00000037780	UPF2	100	80.499	Rhinopithecus_bieti
ENSTRUG00000007519	UPF2	99	81.917	ENSRROG00000043547	UPF2	100	81.479	Rhinopithecus_roxellana
ENSTRUG00000007519	UPF2	99	81.591	ENSSBOG00000020012	UPF2	100	80.841	Saimiri_boliviensis_boliviensis
ENSTRUG00000007519	UPF2	99	85.078	ENSSFOG00015023788	upf2	100	85.156	Scleropages_formosus
ENSTRUG00000007519	UPF2	89	90.641	ENSSMAG00000007637	UPF2	100	89.907	Scophthalmus_maximus
ENSTRUG00000007519	UPF2	100	93.095	ENSSDUG00000017244	UPF2	100	93.173	Seriola_dumerili
ENSTRUG00000007519	UPF2	99	90.047	ENSSLDG00000016866	UPF2	100	90.204	Seriola_lalandi_dorsalis
ENSTRUG00000007519	UPF2	99	79.407	ENSSARG00000008615	UPF2	100	81.308	Sorex_araneus
ENSTRUG00000007519	UPF2	99	80.265	ENSSPUG00000014544	UPF2	99	80.109	Sphenodon_punctatus
ENSTRUG00000007519	UPF2	68	84.036	ENSSSCG00000011117	-	99	84.151	Sus_scrofa
ENSTRUG00000007519	UPF2	99	82.721	ENSTGUG00000002163	-	100	82.592	Taeniopygia_guttata
ENSTRUG00000007519	UPF2	99	92.879	ENSTNIG00000004453	UPF2	100	92.801	Tetraodon_nigroviridis
ENSTRUG00000007519	UPF2	92	73.216	ENSTBEG00000012679	UPF2	93	73.931	Tupaia_belangeri
ENSTRUG00000007519	UPF2	99	80.796	ENSTTRG00000016388	UPF2	100	80.826	Tursiops_truncatus
ENSTRUG00000007519	UPF2	86	94.382	ENSUAMG00000023560	UPF2	98	94.382	Ursus_americanus
ENSTRUG00000007519	UPF2	99	82.527	ENSUMAG00000012953	UPF2	95	82.605	Ursus_maritimus
ENSTRUG00000007519	UPF2	82	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSTRUG00000007519	UPF2	99	82.605	ENSVVUG00000006166	UPF2	100	82.477	Vulpes_vulpes
ENSTRUG00000007519	UPF2	99	78.311	ENSXETG00000033103	UPF2	91	83.448	Xenopus_tropicalis
ENSTRUG00000007519	UPF2	99	91.301	ENSXCOG00000011604	UPF2	100	90.987	Xiphophorus_couchianus
ENSTRUG00000007519	UPF2	99	91.393	ENSXMAG00000017209	UPF2	100	91.080	Xiphophorus_maculatus