EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000007706 (Gene tree)
Gene ID: 101071290
Gene Symbol: exosc1
Alias: -
Full Name: exosome component 1
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 4578 bases
Position: chr17:2302140-2306717
Accession: 101071290
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000053240	EXOSC1	PF10447.9	1e-15	1	1
ENSTRUP00000053240	ECR1_N	PF14382.6	4.4e-10	1	1
ENSTRUP00000019138	ECR1_N	PF14382.6	3.4e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000019216	-	540	-	ENSTRUP00000019138	179 (aa)	-	H2T3A0
ENSTRUT00000049585	-	3528	XM_003972026	ENSTRUP00000053240	193 (aa)	XP_003972075	UPI0002990AEC

Gene Model

Click here to download ENSTRUG00000007706's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000007706's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000007706	exosc1	98	74.074	ENSG00000171311	EXOSC1	97	74.074	Homo_sapiens
ENSTRUG00000007706	exosc1	98	83.158	ENSAPOG00000007822	exosc1	98	83.158	Acanthochromis_polyacanthus
ENSTRUG00000007706	exosc1	98	74.603	ENSAMEG00000000129	EXOSC1	97	74.603	Ailuropoda_melanoleuca
ENSTRUG00000007706	exosc1	96	84.865	ENSACIG00000018956	exosc1	91	84.865	Amphilophus_citrinellus
ENSTRUG00000007706	exosc1	98	82.632	ENSAOCG00000010699	exosc1	98	82.632	Amphiprion_ocellaris
ENSTRUG00000007706	exosc1	91	79.755	ENSAPEG00000012690	exosc1	97	79.755	Amphiprion_percula
ENSTRUG00000007706	exosc1	98	82.632	ENSATEG00000018683	exosc1	98	82.632	Anabas_testudineus
ENSTRUG00000007706	exosc1	99	71.204	ENSACAG00000002101	EXOSC1	98	71.204	Anolis_carolinensis
ENSTRUG00000007706	exosc1	98	74.074	ENSANAG00000034669	EXOSC1	97	74.074	Aotus_nancymaae
ENSTRUG00000007706	exosc1	98	84.211	ENSACLG00000021243	exosc1	98	84.211	Astatotilapia_calliptera
ENSTRUG00000007706	exosc1	98	80.526	ENSAMXG00000011116	exosc1	98	80.526	Astyanax_mexicanus
ENSTRUG00000007706	exosc1	98	74.603	ENSBTAG00000012699	EXOSC1	97	74.603	Bos_taurus
ENSTRUG00000007706	exosc1	94	34.031	WBGene00012966	exos-1	92	34.031	Caenorhabditis_elegans
ENSTRUG00000007706	exosc1	98	73.545	ENSCJAG00000016586	EXOSC1	97	73.545	Callithrix_jacchus
ENSTRUG00000007706	exosc1	98	74.074	ENSCAFG00000009068	EXOSC1	91	74.074	Canis_familiaris
ENSTRUG00000007706	exosc1	98	74.074	ENSCAFG00020006002	EXOSC1	91	74.074	Canis_lupus_dingo
ENSTRUG00000007706	exosc1	98	74.603	ENSCHIG00000015253	EXOSC1	97	74.603	Capra_hircus
ENSTRUG00000007706	exosc1	98	73.545	ENSTSYG00000000760	EXOSC1	97	73.545	Carlito_syrichta
ENSTRUG00000007706	exosc1	98	74.074	ENSCPOG00000001173	EXOSC1	97	74.074	Cavia_porcellus
ENSTRUG00000007706	exosc1	98	39.062	ENSCCAG00000023986	EXOSC1	94	42.353	Cebus_capucinus
ENSTRUG00000007706	exosc1	98	74.074	ENSCATG00000034114	EXOSC1	97	74.074	Cercocebus_atys
ENSTRUG00000007706	exosc1	98	74.074	ENSCLAG00000002463	EXOSC1	97	74.074	Chinchilla_lanigera
ENSTRUG00000007706	exosc1	98	73.545	ENSCSAG00000005870	EXOSC1	97	73.545	Chlorocebus_sabaeus
ENSTRUG00000007706	exosc1	94	62.637	ENSCHOG00000006477	EXOSC1	97	62.637	Choloepus_hoffmanni
ENSTRUG00000007706	exosc1	60	65.421	ENSCPBG00000011949	EXOSC1	88	66.038	Chrysemys_picta_bellii
ENSTRUG00000007706	exosc1	97	52.660	ENSCING00000022734	-	90	52.660	Ciona_intestinalis
ENSTRUG00000007706	exosc1	97	55.319	ENSCSAVG00000010865	-	96	55.319	Ciona_savignyi
ENSTRUG00000007706	exosc1	98	74.074	ENSCANG00000034159	EXOSC1	97	74.074	Colobus_angolensis_palliatus
ENSTRUG00000007706	exosc1	98	73.016	ENSCGRG00001000335	Exosc1	97	73.016	Cricetulus_griseus_chok1gshd
ENSTRUG00000007706	exosc1	98	73.016	ENSCGRG00000011602	Exosc1	97	73.016	Cricetulus_griseus_crigri
ENSTRUG00000007706	exosc1	98	69.474	ENSCSEG00000007895	exosc1	94	69.474	Cynoglossus_semilaevis
ENSTRUG00000007706	exosc1	98	78.947	ENSCVAG00000016748	exosc1	98	78.947	Cyprinodon_variegatus
ENSTRUG00000007706	exosc1	98	80.526	ENSDARG00000059841	exosc1	98	80.526	Danio_rerio
ENSTRUG00000007706	exosc1	74	72.727	ENSDNOG00000007983	EXOSC1	97	72.727	Dasypus_novemcinctus
ENSTRUG00000007706	exosc1	98	73.545	ENSDORG00000016528	Exosc1	97	73.545	Dipodomys_ordii
ENSTRUG00000007706	exosc1	94	49.198	FBgn0032346	Csl4	91	49.198	Drosophila_melanogaster
ENSTRUG00000007706	exosc1	98	71.429	ENSETEG00000002469	-	97	71.429	Echinops_telfairi
ENSTRUG00000007706	exosc1	98	61.458	ENSEBUG00000008164	exosc1	96	61.458	Eptatretus_burgeri
ENSTRUG00000007706	exosc1	98	65.608	ENSEASG00005008684	EXOSC1	97	65.608	Equus_asinus_asinus
ENSTRUG00000007706	exosc1	69	51.969	ENSECAG00000010621	EXOSC1	76	51.969	Equus_caballus
ENSTRUG00000007706	exosc1	98	73.545	ENSEEUG00000005647	EXOSC1	97	73.545	Erinaceus_europaeus
ENSTRUG00000007706	exosc1	98	79.167	ENSELUG00000017369	exosc1	85	79.167	Esox_lucius
ENSTRUG00000007706	exosc1	98	74.603	ENSFCAG00000040563	EXOSC1	95	72.189	Felis_catus
ENSTRUG00000007706	exosc1	98	70.000	ENSFALG00000008450	EXOSC1	97	70.000	Ficedula_albicollis
ENSTRUG00000007706	exosc1	98	73.545	ENSFDAG00000000846	EXOSC1	97	73.545	Fukomys_damarensis
ENSTRUG00000007706	exosc1	98	80.000	ENSFHEG00000009154	exosc1	98	80.000	Fundulus_heteroclitus
ENSTRUG00000007706	exosc1	98	80.526	ENSGMOG00000008993	exosc1	98	80.526	Gadus_morhua
ENSTRUG00000007706	exosc1	98	58.947	ENSGALG00000039917	EXOSC1	99	73.793	Gallus_gallus
ENSTRUG00000007706	exosc1	98	79.474	ENSGAFG00000010265	exosc1	93	79.474	Gambusia_affinis
ENSTRUG00000007706	exosc1	98	81.053	ENSGACG00000018936	exosc1	98	81.053	Gasterosteus_aculeatus
ENSTRUG00000007706	exosc1	98	70.370	ENSGAGG00000019192	EXOSC1	97	70.370	Gopherus_agassizii
ENSTRUG00000007706	exosc1	98	64.550	ENSGGOG00000003099	EXOSC1	96	64.550	Gorilla_gorilla
ENSTRUG00000007706	exosc1	98	84.211	ENSHBUG00000017857	exosc1	98	84.211	Haplochromis_burtoni
ENSTRUG00000007706	exosc1	98	73.016	ENSHGLG00000016927	EXOSC1	97	73.016	Heterocephalus_glaber_female
ENSTRUG00000007706	exosc1	98	73.016	ENSHGLG00100012208	EXOSC1	97	73.016	Heterocephalus_glaber_male
ENSTRUG00000007706	exosc1	98	81.579	ENSHCOG00000019882	exosc1	98	81.579	Hippocampus_comes
ENSTRUG00000007706	exosc1	98	78.421	ENSIPUG00000007685	exosc1	98	78.421	Ictalurus_punctatus
ENSTRUG00000007706	exosc1	98	73.545	ENSSTOG00000006615	EXOSC1	97	73.545	Ictidomys_tridecemlineatus
ENSTRUG00000007706	exosc1	61	63.636	ENSSTOG00000029860	-	89	61.538	Ictidomys_tridecemlineatus
ENSTRUG00000007706	exosc1	98	74.074	ENSJJAG00000013311	Exosc1	97	74.074	Jaculus_jaculus
ENSTRUG00000007706	exosc1	98	80.000	ENSKMAG00000001202	exosc1	80	80.000	Kryptolebias_marmoratus
ENSTRUG00000007706	exosc1	98	82.105	ENSLBEG00000011448	exosc1	98	82.105	Labrus_bergylta
ENSTRUG00000007706	exosc1	100	57.000	ENSLOCG00000003776	exosc1	100	57.000	Lepisosteus_oculatus
ENSTRUG00000007706	exosc1	98	73.016	ENSLAFG00000015983	EXOSC1	97	73.016	Loxodonta_africana
ENSTRUG00000007706	exosc1	98	74.074	ENSMFAG00000001493	EXOSC1	97	74.074	Macaca_fascicularis
ENSTRUG00000007706	exosc1	98	74.074	ENSMMUG00000020028	EXOSC1	95	71.598	Macaca_mulatta
ENSTRUG00000007706	exosc1	98	74.074	ENSMNEG00000029816	EXOSC1	97	74.074	Macaca_nemestrina
ENSTRUG00000007706	exosc1	98	68.254	ENSMLEG00000027643	EXOSC1	97	68.254	Mandrillus_leucophaeus
ENSTRUG00000007706	exosc1	98	83.158	ENSMAMG00000012200	exosc1	98	83.158	Mastacembelus_armatus
ENSTRUG00000007706	exosc1	98	84.211	ENSMZEG00005007042	exosc1	98	84.211	Maylandia_zebra
ENSTRUG00000007706	exosc1	98	64.021	ENSMAUG00000020462	-	96	64.021	Mesocricetus_auratus
ENSTRUG00000007706	exosc1	98	74.074	ENSMICG00000007664	EXOSC1	95	71.598	Microcebus_murinus
ENSTRUG00000007706	exosc1	97	68.085	ENSMOCG00000017124	-	96	68.085	Microtus_ochrogaster
ENSTRUG00000007706	exosc1	98	73.016	ENSMOCG00000006004	-	97	73.016	Microtus_ochrogaster
ENSTRUG00000007706	exosc1	95	63.934	ENSMMOG00000021403	exosc1	95	63.934	Mola_mola
ENSTRUG00000007706	exosc1	98	73.158	ENSMODG00000004213	EXOSC1	97	73.158	Monodelphis_domestica
ENSTRUG00000007706	exosc1	96	83.243	ENSMALG00000007061	exosc1	93	83.243	Monopterus_albus
ENSTRUG00000007706	exosc1	98	72.487	MGP_CAROLIEiJ_G0022959	Exosc1	97	72.487	Mus_caroli
ENSTRUG00000007706	exosc1	98	72.487	ENSMUSG00000034321	Exosc1	97	72.487	Mus_musculus
ENSTRUG00000007706	exosc1	98	73.016	MGP_PahariEiJ_G0014449	Exosc1	97	73.016	Mus_pahari
ENSTRUG00000007706	exosc1	98	72.487	MGP_SPRETEiJ_G0023880	Exosc1	97	72.487	Mus_spretus
ENSTRUG00000007706	exosc1	98	74.603	ENSMPUG00000017044	EXOSC1	97	74.603	Mustela_putorius_furo
ENSTRUG00000007706	exosc1	98	73.545	ENSMLUG00000009228	EXOSC1	97	73.545	Myotis_lucifugus
ENSTRUG00000007706	exosc1	98	71.429	ENSNGAG00000022033	Exosc1	97	71.429	Nannospalax_galili
ENSTRUG00000007706	exosc1	98	64.737	ENSNBRG00000024007	exosc1	97	64.737	Neolamprologus_brichardi
ENSTRUG00000007706	exosc1	98	73.545	ENSNLEG00000013872	EXOSC1	97	73.545	Nomascus_leucogenys
ENSTRUG00000007706	exosc1	59	69.811	ENSMEUG00000002246	EXOSC1	96	68.182	Notamacropus_eugenii
ENSTRUG00000007706	exosc1	98	73.016	ENSOPRG00000005065	EXOSC1	97	73.016	Ochotona_princeps
ENSTRUG00000007706	exosc1	98	73.545	ENSODEG00000016709	EXOSC1	97	73.545	Octodon_degus
ENSTRUG00000007706	exosc1	98	83.158	ENSONIG00000017683	exosc1	97	83.158	Oreochromis_niloticus
ENSTRUG00000007706	exosc1	59	78.947	ENSOANG00000006563	EXOSC1	98	76.423	Ornithorhynchus_anatinus
ENSTRUG00000007706	exosc1	98	67.895	ENSOCUG00000026461	-	97	67.895	Oryctolagus_cuniculus
ENSTRUG00000007706	exosc1	98	72.632	ENSOCUG00000011898	-	97	72.632	Oryctolagus_cuniculus
ENSTRUG00000007706	exosc1	98	79.058	ENSORLG00000011595	exosc1	98	79.058	Oryzias_latipes
ENSTRUG00000007706	exosc1	99	79.167	ENSORLG00020005831	exosc1	98	79.167	Oryzias_latipes_hni
ENSTRUG00000007706	exosc1	98	78.534	ENSORLG00015004317	exosc1	98	78.534	Oryzias_latipes_hsok
ENSTRUG00000007706	exosc1	98	65.263	ENSOMEG00000013907	exosc1	97	65.263	Oryzias_melastigma
ENSTRUG00000007706	exosc1	98	73.545	ENSOGAG00000016259	EXOSC1	97	73.545	Otolemur_garnettii
ENSTRUG00000007706	exosc1	98	74.074	ENSOARG00000010136	EXOSC1	97	74.074	Ovis_aries
ENSTRUG00000007706	exosc1	98	68.063	ENSPPAG00000039842	EXOSC1	97	68.063	Pan_paniscus
ENSTRUG00000007706	exosc1	98	74.603	ENSPPRG00000023366	EXOSC1	97	74.603	Panthera_pardus
ENSTRUG00000007706	exosc1	98	74.603	ENSPTIG00000017701	EXOSC1	97	74.603	Panthera_tigris_altaica
ENSTRUG00000007706	exosc1	98	74.074	ENSPTRG00000002808	EXOSC1	97	74.074	Pan_troglodytes
ENSTRUG00000007706	exosc1	98	74.074	ENSPANG00000021324	EXOSC1	97	74.074	Papio_anubis
ENSTRUG00000007706	exosc1	98	80.526	ENSPKIG00000016037	exosc1	98	80.526	Paramormyrops_kingsleyae
ENSTRUG00000007706	exosc1	76	70.548	ENSPSIG00000013571	EXOSC1	98	69.421	Pelodiscus_sinensis
ENSTRUG00000007706	exosc1	98	70.526	ENSPMGG00000014002	exosc1	98	70.526	Periophthalmus_magnuspinnatus
ENSTRUG00000007706	exosc1	98	73.016	ENSPEMG00000010710	-	97	73.016	Peromyscus_maniculatus_bairdii
ENSTRUG00000007706	exosc1	96	65.054	ENSPMAG00000000195	exosc1	95	65.054	Petromyzon_marinus
ENSTRUG00000007706	exosc1	98	72.105	ENSPCIG00000002210	EXOSC1	96	72.105	Phascolarctos_cinereus
ENSTRUG00000007706	exosc1	98	79.474	ENSPFOG00000006755	exosc1	93	79.474	Poecilia_formosa
ENSTRUG00000007706	exosc1	98	79.474	ENSPLAG00000005880	exosc1	98	79.474	Poecilia_latipinna
ENSTRUG00000007706	exosc1	98	79.474	ENSPMEG00000015598	exosc1	93	79.474	Poecilia_mexicana
ENSTRUG00000007706	exosc1	98	68.421	ENSPREG00000000405	exosc1	92	68.421	Poecilia_reticulata
ENSTRUG00000007706	exosc1	98	74.074	ENSPPYG00000002531	EXOSC1	97	74.074	Pongo_abelii
ENSTRUG00000007706	exosc1	98	73.016	ENSPCAG00000009135	EXOSC1	97	73.016	Procavia_capensis
ENSTRUG00000007706	exosc1	98	67.725	ENSPCOG00000027539	EXOSC1	97	67.725	Propithecus_coquereli
ENSTRUG00000007706	exosc1	98	74.074	ENSPVAG00000003372	EXOSC1	97	74.074	Pteropus_vampyrus
ENSTRUG00000007706	exosc1	98	84.211	ENSPNYG00000021745	exosc1	98	84.211	Pundamilia_nyererei
ENSTRUG00000007706	exosc1	98	79.474	ENSPNAG00000001944	exosc1	98	79.474	Pygocentrus_nattereri
ENSTRUG00000007706	exosc1	98	73.016	ENSRNOG00000048708	Exosc1	97	73.016	Rattus_norvegicus
ENSTRUG00000007706	exosc1	98	74.074	ENSRBIG00000035618	EXOSC1	97	74.074	Rhinopithecus_bieti
ENSTRUG00000007706	exosc1	98	74.074	ENSRROG00000032589	EXOSC1	95	71.598	Rhinopithecus_roxellana
ENSTRUG00000007706	exosc1	64	36.250	YNL232W	CSL4	54	36.250	Saccharomyces_cerevisiae
ENSTRUG00000007706	exosc1	98	74.074	ENSSBOG00000000359	EXOSC1	97	74.074	Saimiri_boliviensis_boliviensis
ENSTRUG00000007706	exosc1	76	78.231	ENSSHAG00000018219	EXOSC1	100	78.231	Sarcophilus_harrisii
ENSTRUG00000007706	exosc1	98	78.421	ENSSFOG00015016289	-	98	78.421	Scleropages_formosus
ENSTRUG00000007706	exosc1	98	80.526	ENSSFOG00015009069	exosc1	98	80.526	Scleropages_formosus
ENSTRUG00000007706	exosc1	98	82.105	ENSSMAG00000003721	exosc1	98	82.105	Scophthalmus_maximus
ENSTRUG00000007706	exosc1	98	81.579	ENSSDUG00000002993	exosc1	98	81.579	Seriola_dumerili
ENSTRUG00000007706	exosc1	98	81.579	ENSSLDG00000025181	exosc1	98	81.579	Seriola_lalandi_dorsalis
ENSTRUG00000007706	exosc1	98	62.963	ENSSARG00000000162	EXOSC1	97	62.963	Sorex_araneus
ENSTRUG00000007706	exosc1	98	69.841	ENSSPUG00000012263	EXOSC1	97	69.841	Sphenodon_punctatus
ENSTRUG00000007706	exosc1	96	80.814	ENSSPAG00000016792	exosc1	81	80.814	Stegastes_partitus
ENSTRUG00000007706	exosc1	98	74.074	ENSSSCG00000010518	EXOSC1	88	74.074	Sus_scrofa
ENSTRUG00000007706	exosc1	97	70.053	ENSTGUG00000009692	EXOSC1	96	70.053	Taeniopygia_guttata
ENSTRUG00000007706	exosc1	100	93.878	ENSTNIG00000014079	exosc1	99	93.878	Tetraodon_nigroviridis
ENSTRUG00000007706	exosc1	98	69.841	ENSTBEG00000006011	EXOSC1	97	69.841	Tupaia_belangeri
ENSTRUG00000007706	exosc1	95	74.863	ENSTTRG00000009887	EXOSC1	99	74.863	Tursiops_truncatus
ENSTRUG00000007706	exosc1	98	58.730	ENSUAMG00000010266	EXOSC1	97	58.730	Ursus_americanus
ENSTRUG00000007706	exosc1	98	59.259	ENSUMAG00000022002	EXOSC1	97	59.259	Ursus_maritimus
ENSTRUG00000007706	exosc1	98	74.074	ENSVVUG00000023192	EXOSC1	61	74.074	Vulpes_vulpes
ENSTRUG00000007706	exosc1	98	69.312	ENSXETG00000003434	exosc1	97	69.312	Xenopus_tropicalis
ENSTRUG00000007706	exosc1	63	80.992	ENSXCOG00000014499	exosc1	93	80.992	Xiphophorus_couchianus
ENSTRUG00000007706	exosc1	98	68.947	ENSXMAG00000023382	exosc1	92	68.947	Xiphophorus_maculatus