EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000007759 (Gene tree)
Gene ID: 101075097
Gene Symbol: hnrnpub
Alias: hnrnpu|hnrpu|wu:fa66f11|wu:fc18b08|wu:fi89c08|zgc:111835|zgc:136480
Full Name: heterogeneous nuclear ribonucleoprotein U
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 8467 bases
Position: chr16:2042966-2051432
Accession: 101075097
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000019293	SAP	PF02037.27	2.8e-11	1	1
ENSTRUP00000048922	SAP	PF02037.27	3.1e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000054320	-	4725	-	ENSTRUP00000048922	858 (aa)	-	-
ENSTRUT00000019371	-	4334	XM_003971486	ENSTRUP00000019293	816 (aa)	XP_003971535	H2T3Q5
ENSTRUT00000019372	-	1719	-	ENSTRUP00000019294	572 (aa)	-	H2T3Q6

Gene Model

Click here to download ENSTRUG00000007759's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000007759's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000007759	hnrnpub	75	44.805	ENSTRUG00000015154	HNRNPUL1	79	42.313

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000007759	hnrnpub	85	64.706	ENSG00000153187	HNRNPU	99	65.333	Homo_sapiens
ENSTRUG00000007759	hnrnpub	100	81.395	ENSAPOG00000017400	hnrnpub	100	81.785	Acanthochromis_polyacanthus
ENSTRUG00000007759	hnrnpub	85	64.706	ENSAMEG00000009145	HNRNPU	78	61.796	Ailuropoda_melanoleuca
ENSTRUG00000007759	hnrnpub	100	77.428	ENSACIG00000012138	hnrnpub	96	86.207	Amphilophus_citrinellus
ENSTRUG00000007759	hnrnpub	100	82.252	ENSAOCG00000015843	hnrnpub	100	82.152	Amphiprion_ocellaris
ENSTRUG00000007759	hnrnpub	100	82.252	ENSAPEG00000014679	hnrnpub	100	82.152	Amphiprion_percula
ENSTRUG00000007759	hnrnpub	98	81.219	ENSATEG00000016178	hnrnpub	97	81.118	Anabas_testudineus
ENSTRUG00000007759	hnrnpub	85	69.048	ENSACAG00000004511	HNRNPU	77	69.048	Anolis_carolinensis
ENSTRUG00000007759	hnrnpub	79	57.740	ENSANAG00000033895	-	99	55.541	Aotus_nancymaae
ENSTRUG00000007759	hnrnpub	100	79.121	ENSACLG00000008165	hnrnpub	100	78.007	Astatotilapia_calliptera
ENSTRUG00000007759	hnrnpub	85	64.706	ENSBTAG00000007606	HNRNPU	84	57.738	Bos_taurus
ENSTRUG00000007759	hnrnpub	85	64.706	ENSCJAG00000016914	HNRNPU	99	55.405	Callithrix_jacchus
ENSTRUG00000007759	hnrnpub	77	58.599	ENSCAFG00020000918	HNRNPU	75	57.549	Canis_lupus_dingo
ENSTRUG00000007759	hnrnpub	79	57.895	ENSCHIG00000004900	HNRNPU	75	57.698	Capra_hircus
ENSTRUG00000007759	hnrnpub	85	66.667	ENSCPOG00000011887	HNRNPU	85	57.504	Cavia_porcellus
ENSTRUG00000007759	hnrnpub	85	64.706	ENSCCAG00000037859	-	99	55.405	Cebus_capucinus
ENSTRUG00000007759	hnrnpub	85	64.706	ENSCATG00000035273	HNRNPU	99	55.541	Cercocebus_atys
ENSTRUG00000007759	hnrnpub	85	66.667	ENSCLAG00000007100	HNRNPU	85	57.504	Chinchilla_lanigera
ENSTRUG00000007759	hnrnpub	79	57.740	ENSCSAG00000009219	HNRNPU	75	57.271	Chlorocebus_sabaeus
ENSTRUG00000007759	hnrnpub	85	64.706	ENSCHOG00000001387	HNRNPU	77	64.706	Choloepus_hoffmanni
ENSTRUG00000007759	hnrnpub	79	60.531	ENSCPBG00000009415	HNRNPU	86	61.179	Chrysemys_picta_bellii
ENSTRUG00000007759	hnrnpub	85	64.706	ENSCANG00000022780	HNRNPU	99	55.570	Colobus_angolensis_palliatus
ENSTRUG00000007759	hnrnpub	84	79.070	ENSCGRG00001020525	Hnrnpu	73	79.070	Cricetulus_griseus_chok1gshd
ENSTRUG00000007759	hnrnpub	100	76.019	ENSCSEG00000010804	hnrnpub	100	77.698	Cynoglossus_semilaevis
ENSTRUG00000007759	hnrnpub	88	86.275	ENSCVAG00000004280	hnrnpub	97	95.833	Cyprinodon_variegatus
ENSTRUG00000007759	hnrnpub	78	64.230	ENSDARG00000015206	hnrnpua	100	58.103	Danio_rerio
ENSTRUG00000007759	hnrnpub	80	63.730	ENSDARG00000004735	hnrnpub	100	56.840	Danio_rerio
ENSTRUG00000007759	hnrnpub	99	49.641	ENSDNOG00000000215	HNRNPU	86	66.667	Dasypus_novemcinctus
ENSTRUG00000007759	hnrnpub	79	57.895	ENSDORG00000015491	Hnrnpu	99	49.767	Dipodomys_ordii
ENSTRUG00000007759	hnrnpub	85	64.706	ENSETEG00000014565	HNRNPU	84	57.692	Echinops_telfairi
ENSTRUG00000007759	hnrnpub	80	55.157	ENSEASG00005003017	HNRNPU	75	57.504	Equus_asinus_asinus
ENSTRUG00000007759	hnrnpub	80	55.007	ENSECAG00000007955	HNRNPU	75	57.355	Equus_caballus
ENSTRUG00000007759	hnrnpub	100	69.319	ENSELUG00000010733	hnrnpub	100	69.535	Esox_lucius
ENSTRUG00000007759	hnrnpub	100	58.866	ENSELUG00000011966	hnrnpua	95	65.679	Esox_lucius
ENSTRUG00000007759	hnrnpub	77	58.439	ENSFCAG00000002156	HNRNPU	70	61.140	Felis_catus
ENSTRUG00000007759	hnrnpub	89	66.667	ENSFDAG00000006026	HNRNPU	99	56.729	Fukomys_damarensis
ENSTRUG00000007759	hnrnpub	100	73.628	ENSFHEG00000022639	hnrnpub	100	74.136	Fundulus_heteroclitus
ENSTRUG00000007759	hnrnpub	100	67.962	ENSGMOG00000001755	hnrnpub	99	67.133	Gadus_morhua
ENSTRUG00000007759	hnrnpub	71	68.519	ENSGALG00000010671	HNRNPU	78	68.519	Gallus_gallus
ENSTRUG00000007759	hnrnpub	100	74.762	ENSGAFG00000009369	hnrnpub	100	76.766	Gambusia_affinis
ENSTRUG00000007759	hnrnpub	90	83.636	ENSGACG00000004679	hnrnpub	99	71.429	Gasterosteus_aculeatus
ENSTRUG00000007759	hnrnpub	85	64.706	ENSGGOG00000004061	HNRNPU	99	55.676	Gorilla_gorilla
ENSTRUG00000007759	hnrnpub	100	79.243	ENSHBUG00000012290	hnrnpub	100	78.007	Haplochromis_burtoni
ENSTRUG00000007759	hnrnpub	85	66.667	ENSHGLG00000010594	-	82	58.218	Heterocephalus_glaber_female
ENSTRUG00000007759	hnrnpub	90	66.667	ENSHGLG00100015093	HNRNPU	99	58.462	Heterocephalus_glaber_male
ENSTRUG00000007759	hnrnpub	100	70.036	ENSHCOG00000020091	hnrnpub	100	71.239	Hippocampus_comes
ENSTRUG00000007759	hnrnpub	76	84.783	ENSIPUG00000007749	hnrnpu	100	64.988	Ictalurus_punctatus
ENSTRUG00000007759	hnrnpub	84	79.070	ENSJJAG00000011371	Hnrnpu	79	79.070	Jaculus_jaculus
ENSTRUG00000007759	hnrnpub	100	75.957	ENSKMAG00000004532	hnrnpub	100	77.778	Kryptolebias_marmoratus
ENSTRUG00000007759	hnrnpub	100	79.612	ENSLBEG00000022520	hnrnpub	100	80.579	Labrus_bergylta
ENSTRUG00000007759	hnrnpub	82	50.595	ENSLACG00000017463	HNRNPU	74	51.135	Latimeria_chalumnae
ENSTRUG00000007759	hnrnpub	87	84.783	ENSLOCG00000016652	hnrnpua	99	62.857	Lepisosteus_oculatus
ENSTRUG00000007759	hnrnpub	86	64.706	ENSLAFG00000021377	HNRNPU	79	66.667	Loxodonta_africana
ENSTRUG00000007759	hnrnpub	85	64.706	ENSMFAG00000037308	HNRNPU	99	55.541	Macaca_fascicularis
ENSTRUG00000007759	hnrnpub	79	57.740	ENSMMUG00000021098	HNRNPU	75	57.271	Macaca_mulatta
ENSTRUG00000007759	hnrnpub	85	64.706	ENSMNEG00000043645	HNRNPU	99	55.541	Macaca_nemestrina
ENSTRUG00000007759	hnrnpub	100	83.800	ENSMAMG00000007196	hnrnpub	100	81.730	Mastacembelus_armatus
ENSTRUG00000007759	hnrnpub	100	79.243	ENSMZEG00005003185	hnrnpub	100	78.250	Maylandia_zebra
ENSTRUG00000007759	hnrnpub	86	79.070	ENSMAUG00000008842	Hnrnpu	79	79.070	Mesocricetus_auratus
ENSTRUG00000007759	hnrnpub	85	64.706	ENSMICG00000004616	HNRNPU	84	57.738	Microcebus_murinus
ENSTRUG00000007759	hnrnpub	86	79.070	ENSMOCG00000015623	Hnrnpu	79	79.070	Microtus_ochrogaster
ENSTRUG00000007759	hnrnpub	85	67.308	ENSMODG00000006515	HNRNPU	84	56.204	Monodelphis_domestica
ENSTRUG00000007759	hnrnpub	96	80.479	ENSMALG00000018243	hnrnpub	99	78.788	Monopterus_albus
ENSTRUG00000007759	hnrnpub	79	55.539	MGP_CAROLIEiJ_G0014962	Hnrnpu	71	61.034	Mus_caroli
ENSTRUG00000007759	hnrnpub	77	58.280	ENSMUSG00000039630	Hnrnpu	71	61.034	Mus_musculus
ENSTRUG00000007759	hnrnpub	79	54.795	MGP_PahariEiJ_G0028193	Hnrnpu	75	56.805	Mus_pahari
ENSTRUG00000007759	hnrnpub	79	55.539	MGP_SPRETEiJ_G0015761	Hnrnpu	71	61.034	Mus_spretus
ENSTRUG00000007759	hnrnpub	86	66.667	ENSMLUG00000000475	HNRNPU	87	57.402	Myotis_lucifugus
ENSTRUG00000007759	hnrnpub	79	57.740	ENSNGAG00000019075	Hnrnpu	75	57.164	Nannospalax_galili
ENSTRUG00000007759	hnrnpub	100	78.999	ENSNBRG00000017855	hnrnpub	100	77.886	Neolamprologus_brichardi
ENSTRUG00000007759	hnrnpub	73	67.308	ENSMEUG00000000541	HNRNPU	78	69.388	Notamacropus_eugenii
ENSTRUG00000007759	hnrnpub	100	78.117	ENSONIG00000001260	hnrnpub	100	76.801	Oreochromis_niloticus
ENSTRUG00000007759	hnrnpub	78	64.706	ENSOCUG00000014469	HNRNPU	76	61.263	Oryctolagus_cuniculus
ENSTRUG00000007759	hnrnpub	100	78.224	ENSORLG00000016114	hnrnpub	100	77.616	Oryzias_latipes
ENSTRUG00000007759	hnrnpub	83	83.895	ENSORLG00020005363	hnrnpub	100	77.859	Oryzias_latipes_hni
ENSTRUG00000007759	hnrnpub	83	83.748	ENSORLG00015001190	hnrnpub	100	77.007	Oryzias_latipes_hsok
ENSTRUG00000007759	hnrnpub	83	83.455	ENSOMEG00000014951	hnrnpub	100	77.737	Oryzias_melastigma
ENSTRUG00000007759	hnrnpub	79	55.319	ENSOGAG00000014024	HNRNPU	75	57.549	Otolemur_garnettii
ENSTRUG00000007759	hnrnpub	85	64.706	ENSOARG00000004985	HNRNPU	86	64.706	Ovis_aries
ENSTRUG00000007759	hnrnpub	85	64.706	ENSPPAG00000038652	HNRNPU	99	55.541	Pan_paniscus
ENSTRUG00000007759	hnrnpub	87	64.706	ENSPPRG00000002662	HNRNPU	80	61.207	Panthera_pardus
ENSTRUG00000007759	hnrnpub	85	64.706	ENSPTRG00000002182	HNRNPU	99	55.541	Pan_troglodytes
ENSTRUG00000007759	hnrnpub	79	57.740	ENSPANG00000011643	HNRNPU	99	55.541	Papio_anubis
ENSTRUG00000007759	hnrnpub	100	64.970	ENSPKIG00000022332	hnrnpub	100	64.364	Paramormyrops_kingsleyae
ENSTRUG00000007759	hnrnpub	100	65.259	ENSPKIG00000006885	hnrnpua	100	64.130	Paramormyrops_kingsleyae
ENSTRUG00000007759	hnrnpub	85	67.308	ENSPCIG00000008657	HNRNPU	76	69.388	Phascolarctos_cinereus
ENSTRUG00000007759	hnrnpub	100	74.251	ENSPFOG00000002908	hnrnpub	100	75.899	Poecilia_formosa
ENSTRUG00000007759	hnrnpub	100	73.772	ENSPLAG00000004160	hnrnpub	100	76.110	Poecilia_latipinna
ENSTRUG00000007759	hnrnpub	85	64.706	ENSPCOG00000018655	-	84	57.738	Propithecus_coquereli
ENSTRUG00000007759	hnrnpub	79	56.211	ENSPCOG00000003883	-	99	49.416	Propithecus_coquereli
ENSTRUG00000007759	hnrnpub	85	64.706	ENSPVAG00000002581	HNRNPU	84	57.440	Pteropus_vampyrus
ENSTRUG00000007759	hnrnpub	100	79.365	ENSPNYG00000021642	hnrnpub	100	78.250	Pundamilia_nyererei
ENSTRUG00000007759	hnrnpub	100	65.505	ENSPNAG00000001055	hnrnpub	100	64.149	Pygocentrus_nattereri
ENSTRUG00000007759	hnrnpub	79	55.539	ENSRNOG00000033790	Hnrnpu	71	61.207	Rattus_norvegicus
ENSTRUG00000007759	hnrnpub	79	56.966	ENSRBIG00000031519	HNRNPU	99	54.865	Rhinopithecus_bieti
ENSTRUG00000007759	hnrnpub	81	57.057	ENSRROG00000041642	HNRNPU	99	55.376	Rhinopithecus_roxellana
ENSTRUG00000007759	hnrnpub	100	65.865	ENSSFOG00015001124	hnrnpub	100	65.625	Scleropages_formosus
ENSTRUG00000007759	hnrnpub	100	64.106	ENSSFOG00015019004	hnrnpu	100	63.669	Scleropages_formosus
ENSTRUG00000007759	hnrnpub	100	78.121	ENSSMAG00000003607	hnrnpub	100	79.905	Scophthalmus_maximus
ENSTRUG00000007759	hnrnpub	100	82.282	ENSSDUG00000005912	hnrnpub	100	81.630	Seriola_dumerili
ENSTRUG00000007759	hnrnpub	100	81.851	ENSSLDG00000004899	hnrnpub	100	81.752	Seriola_lalandi_dorsalis
ENSTRUG00000007759	hnrnpub	86	73.171	ENSSPUG00000011393	HNRNPU	87	58.284	Sphenodon_punctatus
ENSTRUG00000007759	hnrnpub	83	86.823	ENSSPAG00000011853	hnrnpub	100	82.051	Stegastes_partitus
ENSTRUG00000007759	hnrnpub	85	64.706	ENSSSCG00000010877	HNRNPU	84	57.589	Sus_scrofa
ENSTRUG00000007759	hnrnpub	100	83.272	ENSTNIG00000009725	hnrnpub	100	81.775	Tetraodon_nigroviridis
ENSTRUG00000007759	hnrnpub	85	64.706	ENSUAMG00000021120	HNRNPU	84	57.738	Ursus_americanus
ENSTRUG00000007759	hnrnpub	85	59.615	ENSUMAG00000012322	HNRNPU	85	63.063	Ursus_maritimus
ENSTRUG00000007759	hnrnpub	78	64.706	ENSVPAG00000010520	HNRNPU	88	53.769	Vicugna_pacos
ENSTRUG00000007759	hnrnpub	77	58.599	ENSVVUG00000026524	HNRNPU	73	60.213	Vulpes_vulpes
ENSTRUG00000007759	hnrnpub	99	48.829	ENSXETG00000011386	hnrnpu	99	49.943	Xenopus_tropicalis
ENSTRUG00000007759	hnrnpub	100	74.371	ENSXMAG00000010356	hnrnpub	100	75.718	Xiphophorus_maculatus