EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000008185 (Gene tree)
Gene ID: 101080079
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 7057 bases
Position: chr20:9562756-9569812
Accession: 101080079
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000020483	RRM_1	PF00076.22	3.2e-60	1	4
ENSTRUP00000020483	RRM_1	PF00076.22	3.2e-60	2	4
ENSTRUP00000020483	RRM_1	PF00076.22	3.2e-60	3	4
ENSTRUP00000020483	RRM_1	PF00076.22	3.2e-60	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000020568	-	4019	XM_011614977	ENSTRUP00000020483	678 (aa)	XP_011613279	H2T744

Gene Model

Click here to download ENSTRUG00000008185's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000008185's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000008185	ncl	54	39.737	ENSTRUG00000023880	-	76	40.108
ENSTRUG00000008185	ncl	51	31.609	ENSTRUG00000011085	pabpc1l	60	31.351

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000008185	ncl	54	84.553	ENSAPOG00000023888	ncl	54	84.722	Acanthochromis_polyacanthus
ENSTRUG00000008185	ncl	60	42.396	ENSAPOG00000014534	-	65	42.257	Acanthochromis_polyacanthus
ENSTRUG00000008185	ncl	54	77.236	ENSACIG00000013234	ncl	60	77.222	Amphilophus_citrinellus
ENSTRUG00000008185	ncl	54	84.282	ENSAOCG00000003133	ncl	60	72.365	Amphiprion_ocellaris
ENSTRUG00000008185	ncl	61	41.163	ENSAOCG00000014792	-	59	41.579	Amphiprion_ocellaris
ENSTRUG00000008185	ncl	61	41.395	ENSAPEG00000013612	-	59	41.842	Amphiprion_percula
ENSTRUG00000008185	ncl	62	43.207	ENSATEG00000019862	-	78	43.915	Anabas_testudineus
ENSTRUG00000008185	ncl	70	77.731	ENSATEG00000013343	ncl	82	72.949	Anabas_testudineus
ENSTRUG00000008185	ncl	56	59.184	ENSACAG00000001006	-	50	60.163	Anolis_carolinensis
ENSTRUG00000008185	ncl	51	42.735	ENSCHIG00000012665	-	51	42.897	Capra_hircus
ENSTRUG00000008185	ncl	63	56.849	ENSCPBG00000016444	-	54	59.836	Chrysemys_picta_bellii
ENSTRUG00000008185	ncl	56	80.347	ENSCSEG00000015089	ncl	64	78.638	Cynoglossus_semilaevis
ENSTRUG00000008185	ncl	55	76.052	ENSDARG00000002710	ncl	83	76.052	Danio_rerio
ENSTRUG00000008185	ncl	54	44.892	ENSDNOG00000031611	-	64	45.556	Dasypus_novemcinctus
ENSTRUG00000008185	ncl	65	47.577	ENSEBUG00000016173	ncl	55	47.018	Eptatretus_burgeri
ENSTRUG00000008185	ncl	63	72.139	ENSELUG00000006033	ncl	63	73.709	Esox_lucius
ENSTRUG00000008185	ncl	62	46.462	ENSELUG00000022826	-	78	48.895	Esox_lucius
ENSTRUG00000008185	ncl	55	56.464	ENSFALG00000007592	-	52	57.377	Ficedula_albicollis
ENSTRUG00000008185	ncl	80	76.596	ENSFHEG00000018000	ncl	73	73.660	Fundulus_heteroclitus
ENSTRUG00000008185	ncl	56	70.312	ENSGMOG00000001341	ncl	66	67.606	Gadus_morhua
ENSTRUG00000008185	ncl	55	56.614	ENSGALG00000032930	NCL	63	55.936	Gallus_gallus
ENSTRUG00000008185	ncl	87	69.157	ENSGACG00000008970	ncl	63	75.229	Gasterosteus_aculeatus
ENSTRUG00000008185	ncl	63	57.241	ENSGAGG00000013330	-	54	60.109	Gopherus_agassizii
ENSTRUG00000008185	ncl	55	80.054	ENSHCOG00000010234	ncl	60	77.103	Hippocampus_comes
ENSTRUG00000008185	ncl	55	72.222	ENSIPUG00000024556	ncl	81	72.549	Ictalurus_punctatus
ENSTRUG00000008185	ncl	62	79.147	ENSKMAG00000008111	ncl	59	76.540	Kryptolebias_marmoratus
ENSTRUG00000008185	ncl	58	41.667	ENSLBEG00000014278	-	81	43.802	Labrus_bergylta
ENSTRUG00000008185	ncl	62	81.043	ENSLBEG00000019073	ncl	88	68.333	Labrus_bergylta
ENSTRUG00000008185	ncl	61	42.326	ENSLBEG00000007915	-	64	44.415	Labrus_bergylta
ENSTRUG00000008185	ncl	62	62.763	ENSLACG00000009328	ncl	62	62.353	Latimeria_chalumnae
ENSTRUG00000008185	ncl	74	52.972	ENSLACG00000022167	-	76	54.722	Latimeria_chalumnae
ENSTRUG00000008185	ncl	53	67.039	ENSLOCG00000004828	ncl	57	66.981	Lepisosteus_oculatus
ENSTRUG00000008185	ncl	69	74.947	ENSMAMG00000002086	ncl	51	79.433	Mastacembelus_armatus
ENSTRUG00000008185	ncl	62	40.275	ENSMAMG00000003479	-	68	41.333	Mastacembelus_armatus
ENSTRUG00000008185	ncl	54	57.297	ENSMGAG00000008147	-	84	59.389	Meleagris_gallopavo
ENSTRUG00000008185	ncl	51	88.889	ENSMMOG00000008553	ncl	85	88.889	Mola_mola
ENSTRUG00000008185	ncl	54	55.091	ENSMODG00000002470	-	67	51.775	Monodelphis_domestica
ENSTRUG00000008185	ncl	87	67.293	ENSMALG00000014827	ncl	94	63.125	Monopterus_albus
ENSTRUG00000008185	ncl	51	43.831	ENSMPUG00000001663	-	57	43.831	Mustela_putorius_furo
ENSTRUG00000008185	ncl	52	77.431	ENSNBRG00000000146	-	86	76.950	Neolamprologus_brichardi
ENSTRUG00000008185	ncl	51	76.950	ENSNBRG00000001232	ncl	82	76.950	Neolamprologus_brichardi
ENSTRUG00000008185	ncl	54	55.968	ENSMEUG00000012335	-	52	57.104	Notamacropus_eugenii
ENSTRUG00000008185	ncl	54	36.559	ENSONIG00000010631	-	92	37.430	Oreochromis_niloticus
ENSTRUG00000008185	ncl	54	58.793	ENSOANG00000008732	-	58	59.946	Ornithorhynchus_anatinus
ENSTRUG00000008185	ncl	60	35.252	ENSORLG00000004645	-	80	36.927	Oryzias_latipes
ENSTRUG00000008185	ncl	53	81.717	ENSORLG00000007055	ncl	57	78.487	Oryzias_latipes
ENSTRUG00000008185	ncl	55	81.671	ENSORLG00020017943	ncl	57	78.487	Oryzias_latipes_hni
ENSTRUG00000008185	ncl	62	34.676	ENSORLG00020003497	-	72	36.927	Oryzias_latipes_hni
ENSTRUG00000008185	ncl	60	35.817	ENSORLG00015006613	-	75	36.927	Oryzias_latipes_hsok
ENSTRUG00000008185	ncl	53	79.456	ENSORLG00015013815	ncl	87	81.046	Oryzias_latipes_hsok
ENSTRUG00000008185	ncl	57	37.783	ENSOMEG00000015864	-	80	38.544	Oryzias_melastigma
ENSTRUG00000008185	ncl	55	79.679	ENSOMEG00000020786	ncl	57	76.832	Oryzias_melastigma
ENSTRUG00000008185	ncl	63	73.176	ENSPKIG00000002604	ncl	59	73.050	Paramormyrops_kingsleyae
ENSTRUG00000008185	ncl	55	60.733	ENSPSIG00000002361	-	64	60.811	Pelodiscus_sinensis
ENSTRUG00000008185	ncl	62	75.650	ENSPMGG00000004709	ncl	83	79.153	Periophthalmus_magnuspinnatus
ENSTRUG00000008185	ncl	54	55.091	ENSPCIG00000003293	-	52	56.183	Phascolarctos_cinereus
ENSTRUG00000008185	ncl	57	52.510	ENSSHAG00000007489	-	63	50.150	Sarcophilus_harrisii
ENSTRUG00000008185	ncl	54	53.298	ENSSHAG00000002702	-	57	54.076	Sarcophilus_harrisii
ENSTRUG00000008185	ncl	53	44.681	ENSSFOG00015013153	-	78	45.631	Scleropages_formosus
ENSTRUG00000008185	ncl	55	75.806	ENSSFOG00015008583	ncl	67	72.979	Scleropages_formosus
ENSTRUG00000008185	ncl	62	80.282	ENSSMAG00000021241	ncl	60	80.047	Scophthalmus_maximus
ENSTRUG00000008185	ncl	62	43.596	ENSSMAG00000007582	-	60	44.474	Scophthalmus_maximus
ENSTRUG00000008185	ncl	68	40.084	ENSSDUG00000010922	-	79	42.933	Seriola_dumerili
ENSTRUG00000008185	ncl	75	73.674	ENSSDUG00000006128	ncl	82	84.167	Seriola_dumerili
ENSTRUG00000008185	ncl	60	42.211	ENSSLDG00000015784	-	63	42.588	Seriola_lalandi_dorsalis
ENSTRUG00000008185	ncl	70	54.365	ENSSPUG00000008244	-	54	59.894	Sphenodon_punctatus
ENSTRUG00000008185	ncl	85	42.373	ENSSPAG00000001859	-	60	42.246	Stegastes_partitus
ENSTRUG00000008185	ncl	51	84.752	ENSSPAG00000002637	ncl	82	84.752	Stegastes_partitus
ENSTRUG00000008185	ncl	80	63.228	ENSXETG00000009517	ncl	52	64.286	Xenopus_tropicalis
ENSTRUG00000008185	ncl	55	39.791	ENSXCOG00000007369	-	87	39.084	Xiphophorus_couchianus
ENSTRUG00000008185	ncl	67	53.829	ENSXCOG00000003524	ncl	87	59.283	Xiphophorus_couchianus