EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000008608 (Gene tree)
Gene ID: 101076679
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 5772 bases
Position: chr22:5555754-5561525
Accession: 101076679
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000050830	RRM_5	PF13893.6	2.1e-06	1	2
ENSTRUP00000050830	RRM_5	PF13893.6	2.1e-06	2	2
ENSTRUP00000050830	RRM_1	PF00076.22	1e-30	1	2
ENSTRUP00000050830	RRM_1	PF00076.22	1e-30	2	2
ENSTRUP00000021591	RRM_1	PF00076.22	6.3e-29	1	2
ENSTRUP00000021591	RRM_1	PF00076.22	6.3e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000050702	-	2670	XM_003975549	ENSTRUP00000050830	341 (aa)	XP_003975598	UPI0005D1FD93
ENSTRUT00000021679	-	879	-	ENSTRUP00000021591	292 (aa)	-	H2TAA1

Gene Model

Click here to download ENSTRUG00000008608's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000008608's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000008608	trnau1apb	94	41.369	ENSTRUG00000003352	trnau1apa	92	40.179

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000008608	trnau1apb	100	75.410	ENSAPOG00000010086	trnau1apb	100	75.000	Acanthochromis_polyacanthus
ENSTRUG00000008608	trnau1apb	99	78.592	ENSACIG00000001863	trnau1apb	100	77.713	Amphilophus_citrinellus
ENSTRUG00000008608	trnau1apb	99	81.050	ENSAOCG00000011891	trnau1apb	100	80.409	Amphiprion_ocellaris
ENSTRUG00000008608	trnau1apb	100	77.027	ENSAPEG00000008029	trnau1apb	100	80.117	Amphiprion_percula
ENSTRUG00000008608	trnau1apb	99	79.539	ENSATEG00000002196	trnau1apb	100	80.409	Anabas_testudineus
ENSTRUG00000008608	trnau1apb	99	77.326	ENSACLG00000003016	trnau1apb	100	76.163	Astatotilapia_calliptera
ENSTRUG00000008608	trnau1apb	99	60.588	ENSAMXG00000001805	trnau1apb	99	61.243	Astyanax_mexicanus
ENSTRUG00000008608	trnau1apb	99	77.126	ENSCSEG00000018215	trnau1apb	98	77.910	Cynoglossus_semilaevis
ENSTRUG00000008608	trnau1apb	95	69.605	ENSCVAG00000017866	trnau1apb	100	70.746	Cyprinodon_variegatus
ENSTRUG00000008608	trnau1apb	100	62.222	ENSDARG00000056475	trnau1apb	99	61.404	Danio_rerio
ENSTRUG00000008608	trnau1apb	99	59.942	ENSELUG00000016683	trnau1apb	99	62.682	Esox_lucius
ENSTRUG00000008608	trnau1apb	100	76.657	ENSFHEG00000001267	trnau1apb	100	74.148	Fundulus_heteroclitus
ENSTRUG00000008608	trnau1apb	99	66.573	ENSGMOG00000001160	trnau1apb	100	70.554	Gadus_morhua
ENSTRUG00000008608	trnau1apb	61	89.326	ENSGAFG00000006770	trnau1apb	100	71.885	Gambusia_affinis
ENSTRUG00000008608	trnau1apb	99	74.780	ENSGACG00000014944	trnau1apb	100	75.660	Gasterosteus_aculeatus
ENSTRUG00000008608	trnau1apb	71	38.554	ENSGAGG00000022384	-	78	38.554	Gopherus_agassizii
ENSTRUG00000008608	trnau1apb	100	79.023	ENSHBUG00000018944	trnau1apb	100	79.300	Haplochromis_burtoni
ENSTRUG00000008608	trnau1apb	63	84.324	ENSHCOG00000011350	trnau1apb	77	77.083	Hippocampus_comes
ENSTRUG00000008608	trnau1apb	99	58.176	ENSIPUG00000008843	tsp1l	99	62.130	Ictalurus_punctatus
ENSTRUG00000008608	trnau1apb	69	82.353	ENSKMAG00000010082	trnau1apb	100	76.000	Kryptolebias_marmoratus
ENSTRUG00000008608	trnau1apb	99	81.341	ENSLBEG00000020480	trnau1apb	100	81.232	Labrus_bergylta
ENSTRUG00000008608	trnau1apb	100	51.899	ENSLOCG00000013175	trnau1apb	99	51.290	Lepisosteus_oculatus
ENSTRUG00000008608	trnau1apb	99	79.765	ENSMAMG00000012192	trnau1apb	100	80.645	Mastacembelus_armatus
ENSTRUG00000008608	trnau1apb	100	79.023	ENSMZEG00005014852	trnau1apb	100	79.300	Maylandia_zebra
ENSTRUG00000008608	trnau1apb	71	36.546	ENSMGAG00000003234	-	98	38.462	Meleagris_gallopavo
ENSTRUG00000008608	trnau1apb	96	72.414	ENSMMOG00000021521	trnau1apb	100	70.809	Mola_mola
ENSTRUG00000008608	trnau1apb	99	73.312	ENSMALG00000003772	trnau1apb	100	71.609	Monopterus_albus
ENSTRUG00000008608	trnau1apb	97	77.844	ENSNBRG00000000751	trnau1apb	99	76.647	Neolamprologus_brichardi
ENSTRUG00000008608	trnau1apb	99	72.189	ENSONIG00000016639	trnau1apb	100	70.796	Oreochromis_niloticus
ENSTRUG00000008608	trnau1apb	68	83.838	ENSORLG00000013265	trnau1apb	100	77.971	Oryzias_latipes
ENSTRUG00000008608	trnau1apb	100	78.198	ENSORLG00020004464	trnau1apb	100	77.233	Oryzias_latipes_hni
ENSTRUG00000008608	trnau1apb	100	77.907	ENSORLG00015021098	trnau1apb	100	76.945	Oryzias_latipes_hsok
ENSTRUG00000008608	trnau1apb	68	83.838	ENSOMEG00000016531	trnau1apb	100	76.638	Oryzias_melastigma
ENSTRUG00000008608	trnau1apb	99	53.779	ENSPKIG00000007995	trnau1apb	99	57.714	Paramormyrops_kingsleyae
ENSTRUG00000008608	trnau1apb	71	40.486	ENSPSIG00000004189	-	78	39.683	Pelodiscus_sinensis
ENSTRUG00000008608	trnau1apb	99	67.687	ENSPMGG00000018509	trnau1apb	98	76.250	Periophthalmus_magnuspinnatus
ENSTRUG00000008608	trnau1apb	100	76.945	ENSPFOG00000003938	trnau1apb	100	76.012	Poecilia_formosa
ENSTRUG00000008608	trnau1apb	100	76.945	ENSPLAG00000015480	trnau1apb	100	76.012	Poecilia_latipinna
ENSTRUG00000008608	trnau1apb	100	76.945	ENSPMEG00000012743	trnau1apb	100	76.012	Poecilia_mexicana
ENSTRUG00000008608	trnau1apb	100	74.640	ENSPREG00000015035	trnau1apb	100	75.145	Poecilia_reticulata
ENSTRUG00000008608	trnau1apb	99	75.000	ENSPNYG00000012127	trnau1apb	100	73.837	Pundamilia_nyererei
ENSTRUG00000008608	trnau1apb	99	60.819	ENSPNAG00000019138	trnau1apb	98	63.018	Pygocentrus_nattereri
ENSTRUG00000008608	trnau1apb	99	56.725	ENSSFOG00015014158	trnau1apb	99	57.803	Scleropages_formosus
ENSTRUG00000008608	trnau1apb	99	77.941	ENSSMAG00000001745	trnau1apb	99	77.126	Scophthalmus_maximus
ENSTRUG00000008608	trnau1apb	99	80.925	ENSSDUG00000011109	trnau1apb	99	81.818	Seriola_dumerili
ENSTRUG00000008608	trnau1apb	99	80.636	ENSSLDG00000012947	trnau1apb	99	81.525	Seriola_lalandi_dorsalis
ENSTRUG00000008608	trnau1apb	70	35.249	ENSSPUG00000016701	-	82	35.573	Sphenodon_punctatus
ENSTRUG00000008608	trnau1apb	99	80.115	ENSSPAG00000006917	trnau1apb	100	80.347	Stegastes_partitus
ENSTRUG00000008608	trnau1apb	99	72.700	ENSTNIG00000000916	trnau1apb	100	72.054	Tetraodon_nigroviridis
ENSTRUG00000008608	trnau1apb	93	70.990	ENSXCOG00000007974	trnau1apb	94	68.562	Xiphophorus_couchianus
ENSTRUG00000008608	trnau1apb	100	75.216	ENSXMAG00000029918	trnau1apb	100	75.723	Xiphophorus_maculatus