EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000008828 (Gene tree)
Gene ID: 101068593
Gene Symbol: ALYREF
Alias: ALY|ALY/REF|BEF|REF|THOC4
Full Name: THO complex subunit 4-like
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 3551 bases
Position: chr5:4124198-4127748
Accession: 101068593
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000022188	RRM_1	PF00076.22	1.6e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000022278	ALYREF-201	1891	XM_003964478	ENSTRUP00000022188	265 (aa)	XP_003964527	H2TBZ6

Gene Model

Click here to download ENSTRUG00000008828's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03013	RNA transport	KEGG
tru03015	mRNA surveillance pathway	KEGG
tru03040	Spliceosome	KEGG
tru05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000008828's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000008828	ALYREF	100	51.812	ENSTRUG00000003051	-	100	44.816

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000008828	ALYREF	100	67.897	ENSG00000183684	ALYREF	97	69.118	Homo_sapiens
ENSTRUG00000008828	ALYREF	100	77.574	ENSAPOG00000018455	ALYREF	100	84.559	Acanthochromis_polyacanthus
ENSTRUG00000008828	ALYREF	74	74.490	ENSAMEG00000017463	ALYREF	74	76.804	Ailuropoda_melanoleuca
ENSTRUG00000008828	ALYREF	100	63.941	ENSACAG00000010526	ALYREF	100	65.056	Anolis_carolinensis
ENSTRUG00000008828	ALYREF	71	73.797	ENSANAG00000022638	-	75	75.936	Aotus_nancymaae
ENSTRUG00000008828	ALYREF	100	61.538	ENSANAG00000028229	-	78	63.235	Aotus_nancymaae
ENSTRUG00000008828	ALYREF	100	68.266	ENSBTAG00000008498	ALYREF	100	69.485	Bos_taurus
ENSTRUG00000008828	ALYREF	100	68.132	ENSCJAG00000039942	ALYREF	97	69.118	Callithrix_jacchus
ENSTRUG00000008828	ALYREF	100	68.266	ENSCAFG00000005877	ALYREF	100	69.853	Canis_familiaris
ENSTRUG00000008828	ALYREF	100	68.266	ENSCAFG00020009815	ALYREF	100	69.853	Canis_lupus_dingo
ENSTRUG00000008828	ALYREF	100	68.015	ENSCHIG00000017396	ALYREF	97	68.864	Capra_hircus
ENSTRUG00000008828	ALYREF	85	64.655	ENSTSYG00000002272	ALYREF	74	74.093	Carlito_syrichta
ENSTRUG00000008828	ALYREF	51	73.723	ENSCAPG00000014727	-	100	75.735	Cavia_aperea
ENSTRUG00000008828	ALYREF	100	69.231	ENSCPOG00000013710	ALYREF	100	68.750	Cavia_porcellus
ENSTRUG00000008828	ALYREF	100	69.004	ENSCCAG00000020578	-	97	69.485	Cebus_capucinus
ENSTRUG00000008828	ALYREF	100	60.526	ENSCCAG00000030237	-	100	59.925	Cebus_capucinus
ENSTRUG00000008828	ALYREF	100	68.266	ENSCATG00000033169	ALYREF	97	69.485	Cercocebus_atys
ENSTRUG00000008828	ALYREF	100	66.292	ENSCLAG00000015026	ALYREF	100	67.164	Chinchilla_lanigera
ENSTRUG00000008828	ALYREF	100	68.266	ENSCSAG00000002216	ALYREF	97	69.485	Chlorocebus_sabaeus
ENSTRUG00000008828	ALYREF	84	65.652	ENSCANG00000034056	ALYREF	94	72.449	Colobus_angolensis_palliatus
ENSTRUG00000008828	ALYREF	100	64.906	ENSCGRG00001018191	-	100	67.897	Cricetulus_griseus_chok1gshd
ENSTRUG00000008828	ALYREF	74	72.727	ENSCGRG00000015871	-	100	67.431	Cricetulus_griseus_crigri
ENSTRUG00000008828	ALYREF	73	56.923	ENSCSEG00000015438	-	98	58.462	Cynoglossus_semilaevis
ENSTRUG00000008828	ALYREF	71	77.005	ENSDNOG00000002563	ALYREF	75	76.596	Dasypus_novemcinctus
ENSTRUG00000008828	ALYREF	71	76.064	ENSDORG00000025849	-	73	77.249	Dipodomys_ordii
ENSTRUG00000008828	ALYREF	71	75.936	ENSETEG00000016596	ALYREF	100	76.596	Echinops_telfairi
ENSTRUG00000008828	ALYREF	100	68.266	ENSEASG00005005824	ALYREF	95	69.118	Equus_asinus_asinus
ENSTRUG00000008828	ALYREF	100	68.266	ENSECAG00000018754	ALYREF	95	69.118	Equus_caballus
ENSTRUG00000008828	ALYREF	68	70.811	ENSEEUG00000010164	ALYREF	100	69.730	Erinaceus_europaeus
ENSTRUG00000008828	ALYREF	100	68.635	ENSFCAG00000022549	ALYREF	98	69.853	Felis_catus
ENSTRUG00000008828	ALYREF	87	65.678	ENSFDAG00000001213	ALYREF	90	72.115	Fukomys_damarensis
ENSTRUG00000008828	ALYREF	100	70.037	ENSGALG00000007237	ALYREF	100	70.632	Gallus_gallus
ENSTRUG00000008828	ALYREF	100	78.067	ENSGACG00000013328	ALYREF	100	78.067	Gasterosteus_aculeatus
ENSTRUG00000008828	ALYREF	100	69.663	ENSGAGG00000008536	ALYREF	100	70.260	Gopherus_agassizii
ENSTRUG00000008828	ALYREF	100	68.635	ENSGGOG00000013935	ALYREF	99	68.864	Gorilla_gorilla
ENSTRUG00000008828	ALYREF	100	68.750	ENSHGLG00000008293	ALYREF	100	69.373	Heterocephalus_glaber_female
ENSTRUG00000008828	ALYREF	72	72.917	ENSHGLG00100006949	ALYREF	77	74.869	Heterocephalus_glaber_male
ENSTRUG00000008828	ALYREF	100	80.000	ENSHCOG00000015046	ALYREF	100	80.370	Hippocampus_comes
ENSTRUG00000008828	ALYREF	100	69.708	ENSJJAG00000004134	-	100	69.118	Jaculus_jaculus
ENSTRUG00000008828	ALYREF	100	73.208	ENSLACG00000005694	ALYREF	100	72.593	Latimeria_chalumnae
ENSTRUG00000008828	ALYREF	74	75.377	ENSLAFG00000003083	ALYREF	100	76.768	Loxodonta_africana
ENSTRUG00000008828	ALYREF	100	67.547	ENSMFAG00000001394	ALYREF	97	69.173	Macaca_fascicularis
ENSTRUG00000008828	ALYREF	100	68.266	ENSMMUG00000012884	ALYREF	97	69.485	Macaca_mulatta
ENSTRUG00000008828	ALYREF	100	68.266	ENSMNEG00000043666	ALYREF	97	69.485	Macaca_nemestrina
ENSTRUG00000008828	ALYREF	74	72.864	ENSMLEG00000043353	ALYREF	87	72.362	Mandrillus_leucophaeus
ENSTRUG00000008828	ALYREF	100	62.271	ENSMAUG00000020552	-	100	65.038	Mesocricetus_auratus
ENSTRUG00000008828	ALYREF	100	68.498	ENSMICG00000017403	ALYREF	97	68.750	Microcebus_murinus
ENSTRUG00000008828	ALYREF	100	64.045	ENSMOCG00000016792	-	100	67.910	Microtus_ochrogaster
ENSTRUG00000008828	ALYREF	99	67.647	ENSMODG00000003030	ALYREF	84	68.266	Monodelphis_domestica
ENSTRUG00000008828	ALYREF	100	79.554	ENSMALG00000019408	ALYREF	100	80.669	Monopterus_albus
ENSTRUG00000008828	ALYREF	100	69.485	MGP_CAROLIEiJ_G0017529	Alyref	100	69.373	Mus_caroli
ENSTRUG00000008828	ALYREF	100	60.526	MGP_CAROLIEiJ_G0014874	Alyref2	100	60.300	Mus_caroli
ENSTRUG00000008828	ALYREF	89	55.833	ENSMUSG00000096744	Gm4307	64	55.093	Mus_musculus
ENSTRUG00000008828	ALYREF	100	52.189	ENSMUSG00000097427	Gm6763	98	51.724	Mus_musculus
ENSTRUG00000008828	ALYREF	89	55.833	ENSMUSG00000112856	Gm4305	64	55.093	Mus_musculus
ENSTRUG00000008828	ALYREF	100	52.727	ENSMUSG00000117091	AC153137.1	100	49.632	Mus_musculus
ENSTRUG00000008828	ALYREF	100	52.189	ENSMUSG00000094144	Gm21312	82	55.157	Mus_musculus
ENSTRUG00000008828	ALYREF	100	52.189	ENSMUSG00000097550	Gm21304	82	55.157	Mus_musculus
ENSTRUG00000008828	ALYREF	100	61.567	ENSMUSG00000060244	Alyref2	100	62.547	Mus_musculus
ENSTRUG00000008828	ALYREF	100	52.189	ENSMUSG00000095022	Gm20765	82	55.157	Mus_musculus
ENSTRUG00000008828	ALYREF	100	51.495	ENSMUSG00000090854	Gm4340	83	54.626	Mus_musculus
ENSTRUG00000008828	ALYREF	100	52.189	ENSMUSG00000091779	Gm21293	82	55.157	Mus_musculus
ENSTRUG00000008828	ALYREF	89	56.485	ENSMUSG00000094314	Gm4301	64	54.630	Mus_musculus
ENSTRUG00000008828	ALYREF	89	55.833	ENSMUSG00000091101	Gm4302	63	55.093	Mus_musculus
ENSTRUG00000008828	ALYREF	100	69.485	ENSMUSG00000025134	Alyref	100	69.373	Mus_musculus
ENSTRUG00000008828	ALYREF	89	56.485	ENSMUSG00000096640	Gm4312	64	54.630	Mus_musculus
ENSTRUG00000008828	ALYREF	89	55.833	ENSMUSG00000112931	Gm4303	64	55.093	Mus_musculus
ENSTRUG00000008828	ALYREF	100	52.189	ENSMUSG00000097878	Gm8764	98	51.724	Mus_musculus
ENSTRUG00000008828	ALYREF	100	52.574	ENSMUSG00000086727	4931428L18Rik	100	50.735	Mus_musculus
ENSTRUG00000008828	ALYREF	82	58.182	MGP_PahariEiJ_G0027254	-	86	55.455	Mus_pahari
ENSTRUG00000008828	ALYREF	82	58.182	MGP_PahariEiJ_G0027255	-	84	55.455	Mus_pahari
ENSTRUG00000008828	ALYREF	74	74.627	MGP_PahariEiJ_G0018656	-	99	73.134	Mus_pahari
ENSTRUG00000008828	ALYREF	100	69.485	MGP_PahariEiJ_G0018655	-	100	69.373	Mus_pahari
ENSTRUG00000008828	ALYREF	60	62.658	MGP_SPRETEiJ_G0016590	-	100	48.291	Mus_spretus
ENSTRUG00000008828	ALYREF	100	61.194	MGP_SPRETEiJ_G0015679	Alyref2	100	61.798	Mus_spretus
ENSTRUG00000008828	ALYREF	100	69.485	MGP_SPRETEiJ_G0018373	Alyref	100	69.373	Mus_spretus
ENSTRUG00000008828	ALYREF	100	45.775	ENSMLUG00000023213	-	74	48.558	Myotis_lucifugus
ENSTRUG00000008828	ALYREF	75	63.861	ENSMLUG00000026271	-	66	61.881	Myotis_lucifugus
ENSTRUG00000008828	ALYREF	76	60.976	ENSMLUG00000024976	-	66	61.084	Myotis_lucifugus
ENSTRUG00000008828	ALYREF	98	54.373	ENSMLUG00000025677	-	77	52.290	Myotis_lucifugus
ENSTRUG00000008828	ALYREF	98	51.331	ENSMLUG00000022869	-	69	57.561	Myotis_lucifugus
ENSTRUG00000008828	ALYREF	75	72.500	ENSMLUG00000009555	-	68	75.758	Myotis_lucifugus
ENSTRUG00000008828	ALYREF	98	49.057	ENSMLUG00000015043	-	84	53.623	Myotis_lucifugus
ENSTRUG00000008828	ALYREF	80	52.055	ENSMLUG00000028343	-	85	55.914	Myotis_lucifugus
ENSTRUG00000008828	ALYREF	98	58.397	ENSMLUG00000027516	-	78	58.397	Myotis_lucifugus
ENSTRUG00000008828	ALYREF	98	53.612	ENSMLUG00000030407	-	77	51.145	Myotis_lucifugus
ENSTRUG00000008828	ALYREF	98	53.817	ENSMLUG00000027352	-	77	53.435	Myotis_lucifugus
ENSTRUG00000008828	ALYREF	98	57.795	ENSMLUG00000002626	-	98	54.104	Myotis_lucifugus
ENSTRUG00000008828	ALYREF	74	61.809	ENSMLUG00000024447	-	65	60.099	Myotis_lucifugus
ENSTRUG00000008828	ALYREF	98	46.816	ENSMLUG00000024471	-	70	53.110	Myotis_lucifugus
ENSTRUG00000008828	ALYREF	100	68.635	ENSNLEG00000010313	ALYREF	97	69.485	Nomascus_leucogenys
ENSTRUG00000008828	ALYREF	51	73.723	ENSMEUG00000002210	ALYREF	59	77.206	Notamacropus_eugenii
ENSTRUG00000008828	ALYREF	51	74.815	ENSOPRG00000005551	-	52	75.735	Ochotona_princeps
ENSTRUG00000008828	ALYREF	100	67.754	ENSODEG00000008359	ALYREF	100	68.727	Octodon_degus
ENSTRUG00000008828	ALYREF	100	82.593	ENSORLG00000012331	ALYREF	100	85.926	Oryzias_latipes
ENSTRUG00000008828	ALYREF	86	67.094	ENSOGAG00000012409	ALYREF	76	75.916	Otolemur_garnettii
ENSTRUG00000008828	ALYREF	71	74.866	ENSOARG00000017932	ALYREF	69	75.635	Ovis_aries
ENSTRUG00000008828	ALYREF	100	68.635	ENSPPRG00000010829	ALYREF	98	69.853	Panthera_pardus
ENSTRUG00000008828	ALYREF	54	78.322	ENSPTIG00000006399	ALYREF	76	81.944	Panthera_tigris_altaica
ENSTRUG00000008828	ALYREF	100	68.635	ENSPTRG00000009774	ALYREF	97	69.485	Pan_troglodytes
ENSTRUG00000008828	ALYREF	100	68.266	ENSPANG00000019265	ALYREF	97	69.485	Papio_anubis
ENSTRUG00000008828	ALYREF	50	73.684	ENSPSIG00000017541	ALYREF	98	75.556	Pelodiscus_sinensis
ENSTRUG00000008828	ALYREF	100	68.266	ENSPPYG00000008749	ALYREF	97	69.485	Pongo_abelii
ENSTRUG00000008828	ALYREF	100	68.498	ENSPCOG00000020874	ALYREF	97	68.750	Propithecus_coquereli
ENSTRUG00000008828	ALYREF	100	60.526	ENSPVAG00000017866	ALYREF	100	62.030	Pteropus_vampyrus
ENSTRUG00000008828	ALYREF	68	70.968	ENSRNOG00000036687	Alyref	91	70.270	Rattus_norvegicus
ENSTRUG00000008828	ALYREF	72	72.917	ENSRBIG00000039651	ALYREF	74	74.869	Rhinopithecus_bieti
ENSTRUG00000008828	ALYREF	89	66.122	ENSRROG00000045364	ALYREF	80	73.023	Rhinopithecus_roxellana
ENSTRUG00000008828	ALYREF	73	73.711	ENSSHAG00000010459	ALYREF	96	75.385	Sarcophilus_harrisii
ENSTRUG00000008828	ALYREF	100	53.214	ENSSDUG00000003992	-	100	51.020	Seriola_dumerili
ENSTRUG00000008828	ALYREF	100	53.430	ENSSLDG00000005386	-	100	51.546	Seriola_lalandi_dorsalis
ENSTRUG00000008828	ALYREF	100	70.037	ENSSPUG00000004600	ALYREF	100	70.260	Sphenodon_punctatus
ENSTRUG00000008828	ALYREF	100	80.952	ENSSPAG00000011178	ALYREF	97	83.150	Stegastes_partitus
ENSTRUG00000008828	ALYREF	100	68.750	ENSSSCG00000032655	ALYREF	100	69.742	Sus_scrofa
ENSTRUG00000008828	ALYREF	50	73.333	ENSTGUG00000003513	ALYREF	100	73.913	Taeniopygia_guttata
ENSTRUG00000008828	ALYREF	71	75.132	ENSTBEG00000005834	ALYREF	100	77.660	Tupaia_belangeri
ENSTRUG00000008828	ALYREF	100	63.370	ENSTTRG00000012275	ALYREF	100	68.015	Tursiops_truncatus
ENSTRUG00000008828	ALYREF	70	66.667	ENSUAMG00000016931	ALYREF	66	67.553	Ursus_americanus
ENSTRUG00000008828	ALYREF	70	65.591	ENSUMAG00000016384	ALYREF	65	64.894	Ursus_maritimus
ENSTRUG00000008828	ALYREF	100	68.519	ENSXETG00000005391	alyref	100	67.647	Xenopus_tropicalis