EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000008853 (Gene tree)
Gene ID: 101073816
Gene Symbol: prpf4
Alias: mg:ab03a02|zgc:65943
Full Name: pre-mRNA processing factor 4
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 3151 bases
Position: chr6:9170847-9173997
Accession: 101073816
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000022246	PRP4	PF08799.11	3.2e-14	1	1
ENSTRUP00000022247	PRP4	PF08799.11	1.7e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000022338	-	1428	-	ENSTRUP00000022247	475 (aa)	-	H2TC55
ENSTRUT00000022337	-	1562	XM_003965599	ENSTRUP00000022246	509 (aa)	XP_003965648	H2TC54

Gene Model

Click here to download ENSTRUG00000008853's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000008853's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000008853	prpf4	60	31.875	ENSTRUG00000007900	POC1A	88	31.875
ENSTRUG00000008853	prpf4	62	30.418	ENSTRUG00000005982	wdr5	90	30.418
ENSTRUG00000008853	prpf4	64	31.250	ENSTRUG00000007010	tbl3	66	31.250
ENSTRUG00000008853	prpf4	69	30.952	ENSTRUG00000000550	rack1	95	30.952

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000008853	prpf4	99	75.494	ENSG00000136875	PRPF4	97	75.494	Homo_sapiens
ENSTRUG00000008853	prpf4	99	88.820	ENSAPOG00000014132	prpf4	99	88.820	Acanthochromis_polyacanthus
ENSTRUG00000008853	prpf4	99	75.494	ENSAMEG00000013048	PRPF4	95	75.494	Ailuropoda_melanoleuca
ENSTRUG00000008853	prpf4	100	88.235	ENSACIG00000005579	prpf4	100	88.235	Amphilophus_citrinellus
ENSTRUG00000008853	prpf4	100	89.020	ENSAOCG00000005457	prpf4	100	89.020	Amphiprion_ocellaris
ENSTRUG00000008853	prpf4	100	88.824	ENSAPEG00000000776	prpf4	100	88.824	Amphiprion_percula
ENSTRUG00000008853	prpf4	100	90.000	ENSATEG00000023013	prpf4	100	90.000	Anabas_testudineus
ENSTRUG00000008853	prpf4	99	75.889	ENSAPLG00000006534	PRPF4	94	75.889	Anas_platyrhynchos
ENSTRUG00000008853	prpf4	99	75.686	ENSACAG00000015110	PRPF4	98	75.686	Anolis_carolinensis
ENSTRUG00000008853	prpf4	99	75.494	ENSANAG00000022464	PRPF4	93	75.494	Aotus_nancymaae
ENSTRUG00000008853	prpf4	100	87.843	ENSACLG00000019031	prpf4	100	87.843	Astatotilapia_calliptera
ENSTRUG00000008853	prpf4	99	62.644	ENSAMXG00000006756	prpf4	99	74.308	Astyanax_mexicanus
ENSTRUG00000008853	prpf4	99	75.692	ENSBTAG00000004571	PRPF4	97	75.692	Bos_taurus
ENSTRUG00000008853	prpf4	92	45.299	WBGene00007972	prp-4	94	41.880	Caenorhabditis_elegans
ENSTRUG00000008853	prpf4	99	75.494	ENSCJAG00000017856	PRPF4	97	75.494	Callithrix_jacchus
ENSTRUG00000008853	prpf4	99	75.494	ENSCAFG00000003224	PRPF4	94	75.494	Canis_familiaris
ENSTRUG00000008853	prpf4	99	75.494	ENSCAFG00020022637	PRPF4	97	75.494	Canis_lupus_dingo
ENSTRUG00000008853	prpf4	99	75.296	ENSCHIG00000024648	-	97	75.296	Capra_hircus
ENSTRUG00000008853	prpf4	99	75.296	ENSTSYG00000010366	PRPF4	97	75.296	Carlito_syrichta
ENSTRUG00000008853	prpf4	90	68.258	ENSCAPG00000008935	PRPF4	97	68.258	Cavia_aperea
ENSTRUG00000008853	prpf4	99	74.901	ENSCPOG00000010747	-	97	74.901	Cavia_porcellus
ENSTRUG00000008853	prpf4	99	70.356	ENSCPOG00000014729	-	97	70.356	Cavia_porcellus
ENSTRUG00000008853	prpf4	99	75.296	ENSCCAG00000028990	PRPF4	97	75.296	Cebus_capucinus
ENSTRUG00000008853	prpf4	99	75.494	ENSCATG00000021552	PRPF4	97	75.494	Cercocebus_atys
ENSTRUG00000008853	prpf4	99	75.296	ENSCLAG00000013448	PRPF4	97	75.296	Chinchilla_lanigera
ENSTRUG00000008853	prpf4	89	75.221	ENSCHOG00000007233	PRPF4	100	75.221	Choloepus_hoffmanni
ENSTRUG00000008853	prpf4	100	75.246	ENSCPBG00000019136	PRPF4	73	75.246	Chrysemys_picta_bellii
ENSTRUG00000008853	prpf4	97	60.000	ENSCING00000001299	-	95	60.000	Ciona_intestinalis
ENSTRUG00000008853	prpf4	98	59.127	ENSCSAVG00000009178	-	99	60.606	Ciona_savignyi
ENSTRUG00000008853	prpf4	99	75.494	ENSCANG00000003246	PRPF4	97	75.494	Colobus_angolensis_palliatus
ENSTRUG00000008853	prpf4	99	75.692	ENSCGRG00001016992	Prpf4	97	75.692	Cricetulus_griseus_chok1gshd
ENSTRUG00000008853	prpf4	99	75.692	ENSCGRG00000017560	Prpf4	97	75.692	Cricetulus_griseus_crigri
ENSTRUG00000008853	prpf4	100	87.033	ENSCSEG00000020451	prpf4	100	87.033	Cynoglossus_semilaevis
ENSTRUG00000008853	prpf4	99	81.028	ENSDARG00000067639	prpf4	99	81.028	Danio_rerio
ENSTRUG00000008853	prpf4	99	75.099	ENSDNOG00000013203	PRPF4	97	75.099	Dasypus_novemcinctus
ENSTRUG00000008853	prpf4	99	75.494	ENSDORG00000026275	Prpf4	97	75.494	Dipodomys_ordii
ENSTRUG00000008853	prpf4	99	49.728	FBgn0036733	U4-U6-60K	99	50.091	Drosophila_melanogaster
ENSTRUG00000008853	prpf4	99	75.889	ENSETEG00000020389	PRPF4	97	75.889	Echinops_telfairi
ENSTRUG00000008853	prpf4	99	69.595	ENSEBUG00000015229	prpf4	88	70.495	Eptatretus_burgeri
ENSTRUG00000008853	prpf4	99	75.494	ENSEASG00005022678	PRPF4	97	75.494	Equus_asinus_asinus
ENSTRUG00000008853	prpf4	99	75.494	ENSECAG00000007072	PRPF4	97	75.494	Equus_caballus
ENSTRUG00000008853	prpf4	87	81.172	ENSEEUG00000007480	PRPF4	77	81.172	Erinaceus_europaeus
ENSTRUG00000008853	prpf4	99	80.632	ENSELUG00000007510	prpf4	99	80.632	Esox_lucius
ENSTRUG00000008853	prpf4	99	75.494	ENSFCAG00000005514	PRPF4	97	75.494	Felis_catus
ENSTRUG00000008853	prpf4	99	73.756	ENSFALG00000005423	PRPF4	85	73.756	Ficedula_albicollis
ENSTRUG00000008853	prpf4	99	75.296	ENSFDAG00000005839	PRPF4	97	75.296	Fukomys_damarensis
ENSTRUG00000008853	prpf4	100	87.059	ENSFHEG00000001300	prpf4	100	87.059	Fundulus_heteroclitus
ENSTRUG00000008853	prpf4	99	75.692	ENSGALG00000008857	PRPF4	94	75.692	Gallus_gallus
ENSTRUG00000008853	prpf4	94	82.979	ENSGAFG00000012164	prpf4	70	82.979	Gambusia_affinis
ENSTRUG00000008853	prpf4	100	78.278	ENSGACG00000015476	prpf4	100	78.082	Gasterosteus_aculeatus
ENSTRUG00000008853	prpf4	100	75.246	ENSGAGG00000025029	PRPF4	94	75.246	Gopherus_agassizii
ENSTRUG00000008853	prpf4	99	75.494	ENSGGOG00000006943	PRPF4	97	75.494	Gorilla_gorilla
ENSTRUG00000008853	prpf4	100	88.039	ENSHBUG00000000562	prpf4	100	88.039	Haplochromis_burtoni
ENSTRUG00000008853	prpf4	99	75.692	ENSHGLG00000015191	PRPF4	97	75.692	Heterocephalus_glaber_female
ENSTRUG00000008853	prpf4	99	60.672	ENSHGLG00000003838	-	97	59.881	Heterocephalus_glaber_female
ENSTRUG00000008853	prpf4	95	65.164	ENSHGLG00000016628	-	95	65.369	Heterocephalus_glaber_female
ENSTRUG00000008853	prpf4	99	60.672	ENSHGLG00100005571	-	97	59.881	Heterocephalus_glaber_male
ENSTRUG00000008853	prpf4	99	80.040	ENSIPUG00000017956	PRPF4	99	80.040	Ictalurus_punctatus
ENSTRUG00000008853	prpf4	99	75.889	ENSSTOG00000027833	PRPF4	97	75.889	Ictidomys_tridecemlineatus
ENSTRUG00000008853	prpf4	99	75.296	ENSJJAG00000008838	Prpf4	97	75.296	Jaculus_jaculus
ENSTRUG00000008853	prpf4	100	86.863	ENSKMAG00000013236	prpf4	100	86.863	Kryptolebias_marmoratus
ENSTRUG00000008853	prpf4	100	89.587	ENSLBEG00000020611	prpf4	100	89.587	Labrus_bergylta
ENSTRUG00000008853	prpf4	100	72.211	ENSLACG00000016317	PRPF4	97	72.211	Latimeria_chalumnae
ENSTRUG00000008853	prpf4	100	80.354	ENSLOCG00000000581	prpf4	100	80.588	Lepisosteus_oculatus
ENSTRUG00000008853	prpf4	99	75.494	ENSLAFG00000018225	PRPF4	97	75.494	Loxodonta_africana
ENSTRUG00000008853	prpf4	99	75.296	ENSMFAG00000039397	PRPF4	97	75.296	Macaca_fascicularis
ENSTRUG00000008853	prpf4	99	75.494	ENSMMUG00000005844	PRPF4	97	75.494	Macaca_mulatta
ENSTRUG00000008853	prpf4	99	66.996	ENSMNEG00000033737	PRPF4	97	66.996	Macaca_nemestrina
ENSTRUG00000008853	prpf4	99	75.494	ENSMLEG00000040284	PRPF4	97	75.494	Mandrillus_leucophaeus
ENSTRUG00000008853	prpf4	100	88.431	ENSMAMG00000020141	prpf4	100	88.431	Mastacembelus_armatus
ENSTRUG00000008853	prpf4	100	87.843	ENSMZEG00005023205	prpf4	100	87.843	Maylandia_zebra
ENSTRUG00000008853	prpf4	99	75.099	ENSMGAG00000001796	PRPF4	94	75.099	Meleagris_gallopavo
ENSTRUG00000008853	prpf4	99	75.692	ENSMAUG00000018022	Prpf4	97	75.692	Mesocricetus_auratus
ENSTRUG00000008853	prpf4	99	75.787	ENSMICG00000015022	PRPF4	97	75.787	Microcebus_murinus
ENSTRUG00000008853	prpf4	99	75.692	ENSMOCG00000018273	Prpf4	97	75.692	Microtus_ochrogaster
ENSTRUG00000008853	prpf4	100	90.570	ENSMMOG00000021177	prpf4	100	90.570	Mola_mola
ENSTRUG00000008853	prpf4	98	75.050	ENSMODG00000004444	-	96	75.050	Monodelphis_domestica
ENSTRUG00000008853	prpf4	98	74.651	ENSMODG00000025096	-	93	74.651	Monodelphis_domestica
ENSTRUG00000008853	prpf4	100	88.627	ENSMALG00000013624	prpf4	100	88.627	Monopterus_albus
ENSTRUG00000008853	prpf4	99	75.692	MGP_CAROLIEiJ_G0026078	Prpf4	97	75.692	Mus_caroli
ENSTRUG00000008853	prpf4	99	75.692	ENSMUSG00000066148	Prpf4	97	75.692	Mus_musculus
ENSTRUG00000008853	prpf4	99	75.889	MGP_PahariEiJ_G0028413	Prpf4	97	75.889	Mus_pahari
ENSTRUG00000008853	prpf4	99	75.692	MGP_SPRETEiJ_G0027042	Prpf4	97	75.692	Mus_spretus
ENSTRUG00000008853	prpf4	99	75.494	ENSMPUG00000007883	PRPF4	97	75.494	Mustela_putorius_furo
ENSTRUG00000008853	prpf4	99	74.308	ENSMLUG00000008626	-	94	74.308	Myotis_lucifugus
ENSTRUG00000008853	prpf4	99	75.296	ENSMLUG00000015309	-	94	75.296	Myotis_lucifugus
ENSTRUG00000008853	prpf4	99	70.158	ENSNGAG00000000468	Prpf4	97	70.158	Nannospalax_galili
ENSTRUG00000008853	prpf4	100	87.843	ENSNBRG00000007972	prpf4	100	87.843	Neolamprologus_brichardi
ENSTRUG00000008853	prpf4	99	75.494	ENSNLEG00000016647	PRPF4	97	75.494	Nomascus_leucogenys
ENSTRUG00000008853	prpf4	98	74.850	ENSMEUG00000013256	PRPF4	97	74.850	Notamacropus_eugenii
ENSTRUG00000008853	prpf4	99	75.099	ENSOPRG00000005302	PRPF4	97	75.099	Ochotona_princeps
ENSTRUG00000008853	prpf4	99	75.296	ENSODEG00000018147	PRPF4	97	75.296	Octodon_degus
ENSTRUG00000008853	prpf4	100	87.843	ENSONIG00000012671	prpf4	100	87.843	Oreochromis_niloticus
ENSTRUG00000008853	prpf4	99	75.296	ENSOCUG00000005046	PRPF4	97	75.296	Oryctolagus_cuniculus
ENSTRUG00000008853	prpf4	100	86.444	ENSORLG00000019641	prpf4	100	86.444	Oryzias_latipes
ENSTRUG00000008853	prpf4	100	86.444	ENSORLG00020019438	prpf4	100	86.444	Oryzias_latipes_hni
ENSTRUG00000008853	prpf4	100	85.462	ENSOMEG00000020941	prpf4	100	86.100	Oryzias_melastigma
ENSTRUG00000008853	prpf4	99	71.937	ENSOGAG00000007802	PRPF4	95	71.937	Otolemur_garnettii
ENSTRUG00000008853	prpf4	99	75.296	ENSOARG00000006319	PRPF4	94	75.296	Ovis_aries
ENSTRUG00000008853	prpf4	99	75.494	ENSPPAG00000041797	PRPF4	97	75.494	Pan_paniscus
ENSTRUG00000008853	prpf4	99	75.494	ENSPPRG00000014360	PRPF4	97	75.494	Panthera_pardus
ENSTRUG00000008853	prpf4	99	75.494	ENSPTIG00000009574	PRPF4	97	75.494	Panthera_tigris_altaica
ENSTRUG00000008853	prpf4	99	75.494	ENSPTRG00000021274	PRPF4	97	75.494	Pan_troglodytes
ENSTRUG00000008853	prpf4	99	75.296	ENSPANG00000025776	PRPF4	93	75.296	Papio_anubis
ENSTRUG00000008853	prpf4	100	80.943	ENSPKIG00000017259	prpf4	100	80.943	Paramormyrops_kingsleyae
ENSTRUG00000008853	prpf4	100	75.442	ENSPSIG00000010713	PRPF4	89	75.442	Pelodiscus_sinensis
ENSTRUG00000008853	prpf4	100	63.197	ENSPMGG00000000997	prpf4	98	63.011	Periophthalmus_magnuspinnatus
ENSTRUG00000008853	prpf4	99	75.692	ENSPEMG00000024115	Prpf4	97	75.692	Peromyscus_maniculatus_bairdii
ENSTRUG00000008853	prpf4	98	75.050	ENSPCIG00000003821	PRPF4	97	75.050	Phascolarctos_cinereus
ENSTRUG00000008853	prpf4	100	80.156	ENSPFOG00000013524	prpf4	99	83.587	Poecilia_formosa
ENSTRUG00000008853	prpf4	93	82.298	ENSPLAG00000011620	prpf4	99	79.635	Poecilia_latipinna
ENSTRUG00000008853	prpf4	98	84.071	ENSPMEG00000006813	prpf4	100	84.071	Poecilia_mexicana
ENSTRUG00000008853	prpf4	99	75.494	ENSPCAG00000002561	PRPF4	98	75.494	Procavia_capensis
ENSTRUG00000008853	prpf4	99	75.692	ENSPCOG00000011975	PRPF4	97	75.692	Propithecus_coquereli
ENSTRUG00000008853	prpf4	99	72.332	ENSPVAG00000004708	PRPF4	97	72.332	Pteropus_vampyrus
ENSTRUG00000008853	prpf4	100	88.039	ENSPNYG00000008013	prpf4	100	88.039	Pundamilia_nyererei
ENSTRUG00000008853	prpf4	99	80.632	ENSPNAG00000000697	prpf4	99	80.632	Pygocentrus_nattereri
ENSTRUG00000008853	prpf4	99	75.494	ENSRNOG00000014777	Prpf4	97	75.494	Rattus_norvegicus
ENSTRUG00000008853	prpf4	99	75.494	ENSRBIG00000040221	PRPF4	97	75.494	Rhinopithecus_bieti
ENSTRUG00000008853	prpf4	99	75.494	ENSRROG00000040240	PRPF4	97	75.494	Rhinopithecus_roxellana
ENSTRUG00000008853	prpf4	98	75.050	ENSSHAG00000017658	PRPF4	96	75.050	Sarcophilus_harrisii
ENSTRUG00000008853	prpf4	100	80.354	ENSSFOG00015008963	prpf4	100	80.354	Scleropages_formosus
ENSTRUG00000008853	prpf4	100	87.255	ENSSMAG00000008889	prpf4	100	87.255	Scophthalmus_maximus
ENSTRUG00000008853	prpf4	99	89.027	ENSSDUG00000022083	prpf4	94	89.234	Seriola_dumerili
ENSTRUG00000008853	prpf4	99	88.820	ENSSLDG00000008115	prpf4	94	89.027	Seriola_lalandi_dorsalis
ENSTRUG00000008853	prpf4	99	76.772	ENSSPUG00000015582	PRPF4	97	76.772	Sphenodon_punctatus
ENSTRUG00000008853	prpf4	100	85.804	ENSSPAG00000011286	prpf4	100	85.804	Stegastes_partitus
ENSTRUG00000008853	prpf4	99	75.494	ENSSSCG00000024648	PRPF4	97	75.494	Sus_scrofa
ENSTRUG00000008853	prpf4	97	75.709	ENSTGUG00000002623	PRPF4	100	75.918	Taeniopygia_guttata
ENSTRUG00000008853	prpf4	100	94.106	ENSTNIG00000013250	prpf4	100	94.106	Tetraodon_nigroviridis
ENSTRUG00000008853	prpf4	99	68.182	ENSTBEG00000000821	PRPF4	97	68.182	Tupaia_belangeri
ENSTRUG00000008853	prpf4	89	77.517	ENSTTRG00000003246	PRPF4	85	77.517	Tursiops_truncatus
ENSTRUG00000008853	prpf4	70	66.292	ENSUAMG00000018288	PRPF4	96	66.292	Ursus_americanus
ENSTRUG00000008853	prpf4	99	74.901	ENSUMAG00000019375	PRPF4	97	74.901	Ursus_maritimus
ENSTRUG00000008853	prpf4	99	75.296	ENSVPAG00000005281	PRPF4	97	75.296	Vicugna_pacos
ENSTRUG00000008853	prpf4	99	74.951	ENSVVUG00000002476	PRPF4	99	74.951	Vulpes_vulpes
ENSTRUG00000008853	prpf4	68	66.049	ENSXCOG00000006101	prpf4	93	65.594	Xiphophorus_couchianus
ENSTRUG00000008853	prpf4	91	72.258	ENSXMAG00000002750	prpf4	100	73.922	Xiphophorus_maculatus