EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000009984 (Gene tree)
Gene ID: 101071353
Gene Symbol: lig4
Alias: zgc:165595
Full Name: DNA ligase 4
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 4304 bases
Position: chr8:4051418-4055721
Accession: 101071353
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000025119	RNA_ligase	PF09414.10	3.7e-10	1	1
ENSTRUP00000054202	RNA_ligase	PF09414.10	3.7e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000052103	-	3338	XM_011606149	ENSTRUP00000054202	908 (aa)	XP_011604451	UPI00016E6842
ENSTRUT00000025222	-	3335	XM_003966459	ENSTRUP00000025119	908 (aa)	XP_003966508	H2TKB5

Gene Model

Click here to download ENSTRUG00000009984's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000009984's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000009984	lig4	99	65.714	ENSG00000174405	LIG4	100	66.351	Homo_sapiens
ENSTRUG00000009984	lig4	100	87.033	ENSAPOG00000000866	lig4	100	87.033	Acanthochromis_polyacanthus
ENSTRUG00000009984	lig4	99	63.706	ENSAMEG00000019685	LIG4	99	63.706	Ailuropoda_melanoleuca
ENSTRUG00000009984	lig4	99	86.689	ENSACIG00000018309	lig4	99	86.689	Amphilophus_citrinellus
ENSTRUG00000009984	lig4	100	87.033	ENSAOCG00000011768	lig4	100	87.033	Amphiprion_ocellaris
ENSTRUG00000009984	lig4	100	87.253	ENSAPEG00000017815	lig4	100	87.253	Amphiprion_percula
ENSTRUG00000009984	lig4	100	87.143	ENSATEG00000005583	lig4	100	87.143	Anabas_testudineus
ENSTRUG00000009984	lig4	96	67.009	ENSAPLG00000001673	LIG4	99	67.009	Anas_platyrhynchos
ENSTRUG00000009984	lig4	99	66.851	ENSACAG00000014566	LIG4	99	66.851	Anolis_carolinensis
ENSTRUG00000009984	lig4	99	65.604	ENSANAG00000012446	LIG4	99	65.604	Aotus_nancymaae
ENSTRUG00000009984	lig4	99	84.488	ENSACLG00000027051	lig4	99	84.488	Astatotilapia_calliptera
ENSTRUG00000009984	lig4	100	78.190	ENSAMXG00000008192	lig4	95	78.190	Astyanax_mexicanus
ENSTRUG00000009984	lig4	99	65.055	ENSBTAG00000015868	LIG4	99	65.055	Bos_taurus
ENSTRUG00000009984	lig4	99	65.165	ENSCJAG00000014689	LIG4	99	65.165	Callithrix_jacchus
ENSTRUG00000009984	lig4	99	64.895	ENSCAFG00000006031	LIG4	99	64.895	Canis_familiaris
ENSTRUG00000009984	lig4	99	64.895	ENSCAFG00020021230	LIG4	99	64.895	Canis_lupus_dingo
ENSTRUG00000009984	lig4	99	64.615	ENSCHIG00000001019	LIG4	99	64.615	Capra_hircus
ENSTRUG00000009984	lig4	99	64.230	ENSCAPG00000006284	LIG4	99	64.230	Cavia_aperea
ENSTRUG00000009984	lig4	99	63.956	ENSCPOG00000014266	LIG4	99	63.956	Cavia_porcellus
ENSTRUG00000009984	lig4	99	65.385	ENSCCAG00000019971	LIG4	99	65.385	Cebus_capucinus
ENSTRUG00000009984	lig4	99	65.714	ENSCATG00000021075	LIG4	99	65.714	Cercocebus_atys
ENSTRUG00000009984	lig4	99	65.116	ENSCLAG00000003376	LIG4	99	65.116	Chinchilla_lanigera
ENSTRUG00000009984	lig4	99	65.495	ENSCSAG00000000211	LIG4	99	65.495	Chlorocebus_sabaeus
ENSTRUG00000009984	lig4	99	68.182	ENSCPBG00000023291	LIG4	100	67.541	Chrysemys_picta_bellii
ENSTRUG00000009984	lig4	69	47.717	ENSCING00000009536	-	97	47.717	Ciona_intestinalis
ENSTRUG00000009984	lig4	83	45.059	ENSCSAVG00000010336	-	98	45.059	Ciona_savignyi
ENSTRUG00000009984	lig4	99	65.385	ENSCANG00000005805	LIG4	99	65.385	Colobus_angolensis_palliatus
ENSTRUG00000009984	lig4	99	65.155	ENSCGRG00001012072	Lig4	99	65.155	Cricetulus_griseus_chok1gshd
ENSTRUG00000009984	lig4	99	65.155	ENSCGRG00000013417	Lig4	99	65.155	Cricetulus_griseus_crigri
ENSTRUG00000009984	lig4	97	83.540	ENSCSEG00000013905	lig4	96	83.540	Cynoglossus_semilaevis
ENSTRUG00000009984	lig4	100	87.157	ENSCVAG00000007896	lig4	100	87.157	Cyprinodon_variegatus
ENSTRUG00000009984	lig4	100	78.571	ENSDARG00000060620	lig4	100	78.571	Danio_rerio
ENSTRUG00000009984	lig4	99	64.403	ENSDNOG00000000513	LIG4	99	64.403	Dasypus_novemcinctus
ENSTRUG00000009984	lig4	99	65.559	ENSDORG00000027303	Lig4	99	65.559	Dipodomys_ordii
ENSTRUG00000009984	lig4	83	31.995	FBgn0030506	Lig4	85	31.995	Drosophila_melanogaster
ENSTRUG00000009984	lig4	98	63.304	ENSETEG00000015563	LIG4	100	63.415	Echinops_telfairi
ENSTRUG00000009984	lig4	99	44.838	ENSEBUG00000014243	lig4	99	44.838	Eptatretus_burgeri
ENSTRUG00000009984	lig4	99	64.505	ENSEASG00005022073	LIG4	99	64.505	Equus_asinus_asinus
ENSTRUG00000009984	lig4	99	64.286	ENSECAG00000003257	LIG4	99	64.286	Equus_caballus
ENSTRUG00000009984	lig4	98	81.201	ENSELUG00000006787	lig4	99	81.313	Esox_lucius
ENSTRUG00000009984	lig4	99	64.009	ENSFCAG00000031985	LIG4	99	64.009	Felis_catus
ENSTRUG00000009984	lig4	89	68.317	ENSFALG00000004214	LIG4	98	68.317	Ficedula_albicollis
ENSTRUG00000009984	lig4	99	64.286	ENSFDAG00000008973	LIG4	99	64.286	Fukomys_damarensis
ENSTRUG00000009984	lig4	100	86.608	ENSFHEG00000007398	lig4	91	86.608	Fundulus_heteroclitus
ENSTRUG00000009984	lig4	85	77.022	ENSGMOG00000012843	lig4	99	77.022	Gadus_morhua
ENSTRUG00000009984	lig4	100	65.899	ENSGALG00000016854	LIG4	100	65.899	Gallus_gallus
ENSTRUG00000009984	lig4	99	85.433	ENSGAFG00000019779	lig4	96	85.980	Gambusia_affinis
ENSTRUG00000009984	lig4	99	82.340	ENSGACG00000014135	lig4	99	82.340	Gasterosteus_aculeatus
ENSTRUG00000009984	lig4	99	65.495	ENSGGOG00000027771	LIG4	99	65.495	Gorilla_gorilla
ENSTRUG00000009984	lig4	99	84.268	ENSHBUG00000006245	lig4	99	84.268	Haplochromis_burtoni
ENSTRUG00000009984	lig4	99	64.505	ENSHGLG00000000718	LIG4	99	64.505	Heterocephalus_glaber_female
ENSTRUG00000009984	lig4	99	64.505	ENSHGLG00100003265	LIG4	99	64.505	Heterocephalus_glaber_male
ENSTRUG00000009984	lig4	100	81.140	ENSHCOG00000012010	lig4	100	81.140	Hippocampus_comes
ENSTRUG00000009984	lig4	100	78.242	ENSIPUG00000013748	lig4	100	78.242	Ictalurus_punctatus
ENSTRUG00000009984	lig4	99	65.670	ENSSTOG00000024303	LIG4	99	65.670	Ictidomys_tridecemlineatus
ENSTRUG00000009984	lig4	99	64.427	ENSJJAG00000006750	Lig4	99	64.427	Jaculus_jaculus
ENSTRUG00000009984	lig4	100	83.187	ENSKMAG00000001149	lig4	100	83.187	Kryptolebias_marmoratus
ENSTRUG00000009984	lig4	91	87.304	ENSLBEG00000014578	lig4	100	87.304	Labrus_bergylta
ENSTRUG00000009984	lig4	100	67.398	ENSLACG00000003282	LIG4	100	67.398	Latimeria_chalumnae
ENSTRUG00000009984	lig4	100	71.162	ENSLOCG00000008901	lig4	99	71.162	Lepisosteus_oculatus
ENSTRUG00000009984	lig4	99	64.286	ENSLAFG00000031152	LIG4	99	64.286	Loxodonta_africana
ENSTRUG00000009984	lig4	99	65.495	ENSMFAG00000037235	LIG4	99	65.495	Macaca_fascicularis
ENSTRUG00000009984	lig4	99	65.385	ENSMMUG00000008874	LIG4	99	65.385	Macaca_mulatta
ENSTRUG00000009984	lig4	99	65.495	ENSMNEG00000023575	LIG4	99	65.495	Macaca_nemestrina
ENSTRUG00000009984	lig4	99	65.385	ENSMLEG00000026720	LIG4	99	65.385	Mandrillus_leucophaeus
ENSTRUG00000009984	lig4	100	87.033	ENSMAMG00000008472	lig4	99	87.033	Mastacembelus_armatus
ENSTRUG00000009984	lig4	99	84.488	ENSMZEG00005001855	lig4	99	84.488	Maylandia_zebra
ENSTRUG00000009984	lig4	100	65.899	ENSMGAG00000015532	LIG4	100	65.899	Meleagris_gallopavo
ENSTRUG00000009984	lig4	99	64.341	ENSMOCG00000019000	Lig4	99	64.341	Microtus_ochrogaster
ENSTRUG00000009984	lig4	100	87.582	ENSMMOG00000004390	lig4	100	87.582	Mola_mola
ENSTRUG00000009984	lig4	99	64.544	ENSMODG00000025064	LIG4	99	64.693	Monodelphis_domestica
ENSTRUG00000009984	lig4	100	86.154	ENSMALG00000008555	lig4	100	86.154	Monopterus_albus
ENSTRUG00000009984	lig4	99	65.116	MGP_CAROLIEiJ_G0030809	Lig4	99	65.116	Mus_caroli
ENSTRUG00000009984	lig4	99	64.895	ENSMUSG00000049717	Lig4	99	64.895	Mus_musculus
ENSTRUG00000009984	lig4	99	65.116	MGP_PahariEiJ_G0021270	Lig4	99	65.116	Mus_pahari
ENSTRUG00000009984	lig4	99	65.116	MGP_SPRETEiJ_G0031917	Lig4	99	65.116	Mus_spretus
ENSTRUG00000009984	lig4	99	64.097	ENSMPUG00000018675	LIG4	99	64.097	Mustela_putorius_furo
ENSTRUG00000009984	lig4	99	64.945	ENSMLUG00000001267	LIG4	99	64.945	Myotis_lucifugus
ENSTRUG00000009984	lig4	99	64.895	ENSNGAG00000013258	Lig4	99	64.895	Nannospalax_galili
ENSTRUG00000009984	lig4	99	84.378	ENSNBRG00000021252	lig4	99	84.378	Neolamprologus_brichardi
ENSTRUG00000009984	lig4	99	64.945	ENSNLEG00000007888	LIG4	99	64.945	Nomascus_leucogenys
ENSTRUG00000009984	lig4	99	64.230	ENSOPRG00000005765	LIG4	99	64.230	Ochotona_princeps
ENSTRUG00000009984	lig4	99	64.009	ENSODEG00000019683	LIG4	99	64.009	Octodon_degus
ENSTRUG00000009984	lig4	99	84.598	ENSONIG00000011969	lig4	99	84.598	Oreochromis_niloticus
ENSTRUG00000009984	lig4	99	64.673	ENSOCUG00000015734	LIG4	99	64.673	Oryctolagus_cuniculus
ENSTRUG00000009984	lig4	99	82.566	ENSORLG00000004041	lig4	99	82.566	Oryzias_latipes
ENSTRUG00000009984	lig4	99	82.785	ENSORLG00020019607	lig4	99	82.785	Oryzias_latipes_hni
ENSTRUG00000009984	lig4	99	82.675	ENSORLG00015017754	lig4	99	82.675	Oryzias_latipes_hsok
ENSTRUG00000009984	lig4	75	86.608	ENSOMEG00000003459	lig4	99	86.608	Oryzias_melastigma
ENSTRUG00000009984	lig4	99	65.608	ENSOGAG00000032120	LIG4	99	65.608	Otolemur_garnettii
ENSTRUG00000009984	lig4	81	69.607	ENSOARG00000005590	LIG4	97	69.607	Ovis_aries
ENSTRUG00000009984	lig4	99	65.275	ENSPPAG00000032998	LIG4	99	65.275	Pan_paniscus
ENSTRUG00000009984	lig4	99	64.341	ENSPPRG00000017804	LIG4	99	64.341	Panthera_pardus
ENSTRUG00000009984	lig4	99	64.452	ENSPTIG00000010051	LIG4	99	64.452	Panthera_tigris_altaica
ENSTRUG00000009984	lig4	99	65.385	ENSPTRG00000006025	LIG4	99	65.385	Pan_troglodytes
ENSTRUG00000009984	lig4	99	65.824	ENSPANG00000007562	LIG4	99	65.824	Papio_anubis
ENSTRUG00000009984	lig4	100	76.593	ENSPKIG00000011645	lig4	99	76.593	Paramormyrops_kingsleyae
ENSTRUG00000009984	lig4	99	67.991	ENSPSIG00000001504	LIG4	99	67.991	Pelodiscus_sinensis
ENSTRUG00000009984	lig4	98	78.971	ENSPMGG00000013486	lig4	100	78.470	Periophthalmus_magnuspinnatus
ENSTRUG00000009984	lig4	99	64.270	ENSPEMG00000000076	Lig4	99	64.270	Peromyscus_maniculatus_bairdii
ENSTRUG00000009984	lig4	99	64.764	ENSPCIG00000021882	LIG4	99	64.764	Phascolarctos_cinereus
ENSTRUG00000009984	lig4	100	86.404	ENSPFOG00000000797	lig4	100	86.952	Poecilia_formosa
ENSTRUG00000009984	lig4	100	86.294	ENSPLAG00000001196	lig4	100	86.842	Poecilia_latipinna
ENSTRUG00000009984	lig4	100	86.294	ENSPMEG00000021353	lig4	100	86.952	Poecilia_mexicana
ENSTRUG00000009984	lig4	100	85.855	ENSPREG00000007323	lig4	100	86.513	Poecilia_reticulata
ENSTRUG00000009984	lig4	99	65.055	ENSPPYG00000005540	LIG4	99	65.055	Pongo_abelii
ENSTRUG00000009984	lig4	99	64.505	ENSPVAG00000016403	LIG4	99	64.505	Pteropus_vampyrus
ENSTRUG00000009984	lig4	99	84.488	ENSPNYG00000009660	lig4	99	84.488	Pundamilia_nyererei
ENSTRUG00000009984	lig4	99	80.333	ENSPNAG00000028069	LIG4	99	80.333	Pygocentrus_nattereri
ENSTRUG00000009984	lig4	99	80.333	ENSPNAG00000028056	lig4	99	80.333	Pygocentrus_nattereri
ENSTRUG00000009984	lig4	99	64.286	ENSRNOG00000014605	Lig4	99	64.286	Rattus_norvegicus
ENSTRUG00000009984	lig4	99	64.796	ENSRBIG00000039962	LIG4	99	64.796	Rhinopithecus_bieti
ENSTRUG00000009984	lig4	99	65.604	ENSRROG00000006040	LIG4	99	65.604	Rhinopithecus_roxellana
ENSTRUG00000009984	lig4	99	65.604	ENSSBOG00000019029	LIG4	99	65.604	Saimiri_boliviensis_boliviensis
ENSTRUG00000009984	lig4	99	62.857	ENSSHAG00000009525	LIG4	99	63.008	Sarcophilus_harrisii
ENSTRUG00000009984	lig4	100	77.741	ENSSFOG00015012835	lig4	100	77.741	Scleropages_formosus
ENSTRUG00000009984	lig4	100	81.648	ENSSMAG00000011267	lig4	100	81.648	Scophthalmus_maximus
ENSTRUG00000009984	lig4	100	86.214	ENSSDUG00000010343	lig4	100	86.214	Seriola_dumerili
ENSTRUG00000009984	lig4	100	84.792	ENSSLDG00000003239	lig4	100	84.902	Seriola_lalandi_dorsalis
ENSTRUG00000009984	lig4	99	65.017	ENSSARG00000006573	LIG4	99	65.017	Sorex_araneus
ENSTRUG00000009984	lig4	92	68.690	ENSSPUG00000002444	LIG4	100	68.690	Sphenodon_punctatus
ENSTRUG00000009984	lig4	100	86.923	ENSSPAG00000001609	lig4	100	86.923	Stegastes_partitus
ENSTRUG00000009984	lig4	99	63.837	ENSSSCG00000009540	LIG4	99	63.837	Sus_scrofa
ENSTRUG00000009984	lig4	99	65.962	ENSTGUG00000010795	LIG4	99	65.962	Taeniopygia_guttata
ENSTRUG00000009984	lig4	100	88.669	ENSTNIG00000010348	lig4	100	88.889	Tetraodon_nigroviridis
ENSTRUG00000009984	lig4	99	64.725	ENSTBEG00000017741	LIG4	99	64.725	Tupaia_belangeri
ENSTRUG00000009984	lig4	99	64.066	ENSTTRG00000012660	LIG4	99	64.066	Tursiops_truncatus
ENSTRUG00000009984	lig4	99	63.827	ENSUAMG00000003773	LIG4	99	63.827	Ursus_americanus
ENSTRUG00000009984	lig4	100	67.360	ENSXETG00000002654	lig4	100	67.360	Xenopus_tropicalis
ENSTRUG00000009984	lig4	100	86.184	ENSXCOG00000017401	lig4	100	86.732	Xiphophorus_couchianus
ENSTRUG00000009984	lig4	100	86.184	ENSXMAG00000015142	lig4	99	86.732	Xiphophorus_maculatus