EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000010187 (Gene tree)
Gene ID: 101074746
Gene Symbol: cirbpa
Alias: cirbp|wu:fb12c11|wu:fi20g12|zgc:136559
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 6383 bases
Position: chr22:7784236-7790618
Accession: 101074746
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000056514	RRM_1	PF00076.22	1.4e-25	1	1
ENSTRUP00000025659	RRM_1	PF00076.22	2.3e-25	1	1
ENSTRUP00000050175	RRM_1	PF00076.22	2.3e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000049169	-	411	-	ENSTRUP00000056514	136 (aa)	-	-
ENSTRUT00000054965	-	5483	XM_003975626	ENSTRUP00000050175	170 (aa)	XP_003975675	UPI000298C377
ENSTRUT00000025763	-	750	-	ENSTRUP00000025659	168 (aa)	-	H2TLV4

Gene Model

Click here to download ENSTRUG00000010187's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000010187's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000010187	cirbpa	79	41.818	ENSTRUG00000015168	tra2b	57	42.308
ENSTRUG00000010187	cirbpa	60	41.463	ENSTRUG00000015362	hnrnpa0b	58	41.463
ENSTRUG00000010187	cirbpa	89	52.632	ENSTRUG00000020491	-	54	52.632
ENSTRUG00000010187	cirbpa	65	36.471	ENSTRUG00000000523	elavl4	61	36.471
ENSTRUG00000010187	cirbpa	92	37.838	ENSTRUG00000008411	-	68	37.838
ENSTRUG00000010187	cirbpa	74	37.500	ENSTRUG00000007296	-	72	37.500
ENSTRUG00000010187	cirbpa	57	39.189	ENSTRUG00000025954	hnrnpaba	56	39.189
ENSTRUG00000010187	cirbpa	56	34.211	ENSTRUG00000023965	-	57	34.211
ENSTRUG00000010187	cirbpa	54	45.333	ENSTRUG00000021586	-	74	45.333
ENSTRUG00000010187	cirbpa	57	38.889	ENSTRUG00000023704	elavl1a	64	38.889
ENSTRUG00000010187	cirbpa	53	33.333	ENSTRUG00000025286	sf3b6	55	33.333
ENSTRUG00000010187	cirbpa	66	37.500	ENSTRUG00000010719	elavl3	66	37.500
ENSTRUG00000010187	cirbpa	56	32.895	ENSTRUG00000021397	-	74	32.895

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000010187	cirbpa	80	69.630	ENSAPOG00000004458	cirbpa	77	68.750	Acanthochromis_polyacanthus
ENSTRUG00000010187	cirbpa	99	75.581	ENSACIG00000016116	cirbpa	100	74.432	Amphilophus_citrinellus
ENSTRUG00000010187	cirbpa	100	67.016	ENSAOCG00000016212	cirbpa	100	67.553	Amphiprion_ocellaris
ENSTRUG00000010187	cirbpa	100	67.895	ENSAPEG00000011989	cirbpa	100	69.355	Amphiprion_percula
ENSTRUG00000010187	cirbpa	100	70.166	ENSATEG00000014985	cirbpa	100	68.508	Anabas_testudineus
ENSTRUG00000010187	cirbpa	100	77.841	ENSACLG00000002094	-	100	77.841	Astatotilapia_calliptera
ENSTRUG00000010187	cirbpa	100	53.431	ENSAMXG00000015612	cirbpb	82	61.798	Astyanax_mexicanus
ENSTRUG00000010187	cirbpa	61	73.494	ENSAMXG00000002894	cirbpa	84	65.152	Astyanax_mexicanus
ENSTRUG00000010187	cirbpa	100	61.616	ENSCSEG00000014344	cirbpa	100	64.433	Cynoglossus_semilaevis
ENSTRUG00000010187	cirbpa	100	68.108	ENSCVAG00000004853	cirbpa	100	69.189	Cyprinodon_variegatus
ENSTRUG00000010187	cirbpa	61	71.084	ENSDARG00000103672	cirbpa	100	54.054	Danio_rerio
ENSTRUG00000010187	cirbpa	63	77.647	ENSDARG00000013351	cirbpb	92	58.738	Danio_rerio
ENSTRUG00000010187	cirbpa	61	74.699	ENSELUG00000004675	-	87	63.780	Esox_lucius
ENSTRUG00000010187	cirbpa	60	82.716	ENSELUG00000009891	cirbpa	100	59.898	Esox_lucius
ENSTRUG00000010187	cirbpa	99	70.115	ENSFHEG00000002580	cirbpa	100	74.713	Fundulus_heteroclitus
ENSTRUG00000010187	cirbpa	61	73.494	ENSGMOG00000020447	-	72	63.780	Gadus_morhua
ENSTRUG00000010187	cirbpa	99	51.562	ENSGMOG00000007179	cirbpb	98	49.746	Gadus_morhua
ENSTRUG00000010187	cirbpa	60	77.778	ENSGMOG00000012137	cirbpa	100	60.000	Gadus_morhua
ENSTRUG00000010187	cirbpa	100	69.189	ENSGAFG00000008654	cirbpa	100	71.892	Gambusia_affinis
ENSTRUG00000010187	cirbpa	61	79.518	ENSGACG00000014978	-	100	49.462	Gasterosteus_aculeatus
ENSTRUG00000010187	cirbpa	100	59.375	ENSGACG00000015206	cirbpa	100	62.632	Gasterosteus_aculeatus
ENSTRUG00000010187	cirbpa	100	71.038	ENSHBUG00000022060	cirbpa	100	73.224	Haplochromis_burtoni
ENSTRUG00000010187	cirbpa	60	86.420	ENSHCOG00000001170	cirbpa	90	76.852	Hippocampus_comes
ENSTRUG00000010187	cirbpa	61	79.518	ENSIPUG00000000698	cirbpb	100	59.113	Ictalurus_punctatus
ENSTRUG00000010187	cirbpa	100	69.714	ENSKMAG00000005905	cirbpa	100	68.571	Kryptolebias_marmoratus
ENSTRUG00000010187	cirbpa	61	84.337	ENSLBEG00000027731	-	93	69.231	Labrus_bergylta
ENSTRUG00000010187	cirbpa	100	64.368	ENSLBEG00000000292	cirbpa	100	65.027	Labrus_bergylta
ENSTRUG00000010187	cirbpa	100	67.033	ENSMAMG00000010168	cirbpa	100	70.330	Mastacembelus_armatus
ENSTRUG00000010187	cirbpa	100	71.038	ENSMZEG00005025577	-	100	73.224	Maylandia_zebra
ENSTRUG00000010187	cirbpa	51	91.429	ENSMMOG00000010696	cirbpa	84	91.429	Mola_mola
ENSTRUG00000010187	cirbpa	100	65.556	ENSMALG00000020092	cirbpa	100	69.444	Monopterus_albus
ENSTRUG00000010187	cirbpa	100	71.038	ENSNBRG00000019658	cirbpa	100	73.224	Neolamprologus_brichardi
ENSTRUG00000010187	cirbpa	99	77.326	ENSONIG00000010169	cirbpa	100	76.136	Oreochromis_niloticus
ENSTRUG00000010187	cirbpa	100	73.563	ENSORLG00000015433	cirbpa	100	73.563	Oryzias_latipes
ENSTRUG00000010187	cirbpa	100	73.563	ENSORLG00020016909	cirbpa	100	73.563	Oryzias_latipes_hni
ENSTRUG00000010187	cirbpa	100	73.563	ENSORLG00015016636	cirbpa	100	73.563	Oryzias_latipes_hsok
ENSTRUG00000010187	cirbpa	100	75.145	ENSOMEG00000021469	cirbpa	73	79.191	Oryzias_melastigma
ENSTRUG00000010187	cirbpa	59	80.000	ENSPKIG00000010561	cirbpa	100	59.474	Paramormyrops_kingsleyae
ENSTRUG00000010187	cirbpa	99	63.043	ENSPMGG00000017342	cirbpa	95	64.130	Periophthalmus_magnuspinnatus
ENSTRUG00000010187	cirbpa	100	69.519	ENSPFOG00000015653	cirbpa	100	71.658	Poecilia_formosa
ENSTRUG00000010187	cirbpa	99	69.730	ENSPLAG00000011125	cirbpa	100	71.892	Poecilia_latipinna
ENSTRUG00000010187	cirbpa	100	69.892	ENSPMEG00000013878	cirbpa	100	72.043	Poecilia_mexicana
ENSTRUG00000010187	cirbpa	99	72.067	ENSPREG00000018042	cirbpa	98	71.429	Poecilia_reticulata
ENSTRUG00000010187	cirbpa	100	71.038	ENSPNYG00000007198	-	100	73.224	Pundamilia_nyererei
ENSTRUG00000010187	cirbpa	100	55.941	ENSPNAG00000019997	cirbpb	100	59.204	Pygocentrus_nattereri
ENSTRUG00000010187	cirbpa	60	72.840	ENSPNAG00000024569	cirbpa	100	57.692	Pygocentrus_nattereri
ENSTRUG00000010187	cirbpa	59	76.250	ENSSFOG00015009951	cirbpa	100	59.788	Scleropages_formosus
ENSTRUG00000010187	cirbpa	100	57.754	ENSSFOG00015005346	cirbpb	100	65.241	Scleropages_formosus
ENSTRUG00000010187	cirbpa	100	62.000	ENSSMAG00000002412	cirbpa	100	58.586	Scophthalmus_maximus
ENSTRUG00000010187	cirbpa	100	66.082	ENSSDUG00000016099	cirbpa	100	60.989	Seriola_dumerili
ENSTRUG00000010187	cirbpa	66	91.111	ENSSLDG00000011320	cirbpa	54	79.279	Seriola_lalandi_dorsalis
ENSTRUG00000010187	cirbpa	99	67.470	ENSSPAG00000023037	cirbpa	99	62.857	Stegastes_partitus
ENSTRUG00000010187	cirbpa	100	72.826	ENSTNIG00000000450	cirbpa	100	79.444	Tetraodon_nigroviridis
ENSTRUG00000010187	cirbpa	99	72.067	ENSXCOG00000008262	cirbpa	92	89.041	Xiphophorus_couchianus
ENSTRUG00000010187	cirbpa	100	72.678	ENSXMAG00000019336	cirbpa	100	73.770	Xiphophorus_maculatus