EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSTRUG00000010645 (Gene tree)
Gene ID
101071745
Gene Symbol
upf3b
Alias
zgc:174674|zgc:66390
Full Name
UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type
protein_coding
Species
Takifugu_rubripes
Status
putative
Strand
Plus strand
Length
5546 bases
Position
chr14:8429188-8434733
Accession
101071745
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSTRUP00000051364Smg4_UPF3PF03467.157.7e-5311
ENSTRUP00000026872Smg4_UPF3PF03467.158.1e-5311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSTRUT00000057162-4479-ENSTRUP00000051364424 (aa)--
ENSTRUT00000026981-4408XM_003970606ENSTRUP00000026872452 (aa)XP_003970655H2TQB5
Gene Model
Click here to download ENSTRUG00000010645's gene model file
Pathways
Pathway IDPathway NameSource
tru03013RNA transportKEGG
tru03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000010645's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSTRUG00000010645upf3b9049.180ENSTRUG00000012730upf3a8349.024
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSTRUG00000010645upf3b8949.515ENSG00000169062UPF3A8249.510Homo_sapiens
ENSTRUG00000010645upf3b6169.767ENSG00000125351UPF3B7475.155Homo_sapiens
ENSTRUG00000010645upf3b10078.431ENSAPOG00000012775upf3b10078.431Acanthochromis_polyacanthus
ENSTRUG00000010645upf3b9955.756ENSAMEG00000000163UPF3B8757.590Ailuropoda_melanoleuca
ENSTRUG00000010645upf3b9546.682ENSAMEG00000004259UPF3A8648.418Ailuropoda_melanoleuca
ENSTRUG00000010645upf3b10072.258ENSACIG00000013582upf3b10076.989Amphilophus_citrinellus
ENSTRUG00000010645upf3b10076.906ENSAOCG00000000706upf3b10076.906Amphiprion_ocellaris
ENSTRUG00000010645upf3b10077.560ENSAPEG00000005545upf3b10078.214Amphiprion_percula
ENSTRUG00000010645upf3b10077.754ENSATEG00000018742upf3b10077.754Anabas_testudineus
ENSTRUG00000010645upf3b9859.130ENSACAG00000003625UPF3B9759.348Anolis_carolinensis
ENSTRUG00000010645upf3b9149.242ENSACAG00000001540UPF3A9350.620Anolis_carolinensis
ENSTRUG00000010645upf3b9458.411ENSANAG00000021894-7475.000Aotus_nancymaae
ENSTRUG00000010645upf3b9852.575ENSANAG00000025598-7472.308Aotus_nancymaae
ENSTRUG00000010645upf3b10078.091ENSACLG00000001649upf3b10078.742Astatotilapia_calliptera
ENSTRUG00000010645upf3b6777.992ENSAMXG00000000199upf3b9577.992Astyanax_mexicanus
ENSTRUG00000010645upf3b5665.314ENSBTAG00000035615UPF3B5374.691Bos_taurus
ENSTRUG00000010645upf3b9458.080ENSCJAG00000004975UPF3B7474.375Callithrix_jacchus
ENSTRUG00000010645upf3b9856.838ENSCAFG00000018426UPF3B8957.831Canis_familiaris
ENSTRUG00000010645upf3b9854.915ENSCAFG00020004074UPF3B7478.261Canis_lupus_dingo
ENSTRUG00000010645upf3b9456.591ENSCHIG00000018011-8955.841Capra_hircus
ENSTRUG00000010645upf3b9854.393ENSCHIG00000000247-8755.841Capra_hircus
ENSTRUG00000010645upf3b9242.271ENSCHIG00000011454-8741.119Capra_hircus
ENSTRUG00000010645upf3b9856.009ENSTSYG00000014690UPF3B9658.605Carlito_syrichta
ENSTRUG00000010645upf3b9248.380ENSCCAG00000018406UPF3A8548.000Cebus_capucinus
ENSTRUG00000010645upf3b8841.235ENSCCAG00000029813-5159.740Cebus_capucinus
ENSTRUG00000010645upf3b6864.261ENSCATG00000017506UPF3B7475.000Cercocebus_atys
ENSTRUG00000010645upf3b9347.772ENSCATG00000029733UPF3A8149.386Cercocebus_atys
ENSTRUG00000010645upf3b6664.189ENSCLAG00000003260UPF3B8757.349Chinchilla_lanigera
ENSTRUG00000010645upf3b8948.792ENSCSAG00000017388UPF3A8248.780Chlorocebus_sabaeus
ENSTRUG00000010645upf3b6166.421ENSCSAG00000018348UPF3B8855.116Chlorocebus_sabaeus
ENSTRUG00000010645upf3b9756.706ENSCPBG00000020685UPF3B9356.364Chrysemys_picta_bellii
ENSTRUG00000010645upf3b7256.037ENSCGRG00001013643-8258.882Cricetulus_griseus_chok1gshd
ENSTRUG00000010645upf3b9553.898ENSCGRG00001006858-8358.897Cricetulus_griseus_chok1gshd
ENSTRUG00000010645upf3b8757.828ENSCGRG00000007627Upf3b9358.734Cricetulus_griseus_crigri
ENSTRUG00000010645upf3b9973.536ENSCSEG00000002046upf3b9971.279Cynoglossus_semilaevis
ENSTRUG00000010645upf3b10073.638ENSCVAG00000005030upf3b10073.856Cyprinodon_variegatus
ENSTRUG00000010645upf3b9967.824ENSDARG00000000489upf3b9767.920Danio_rerio
ENSTRUG00000010645upf3b9854.393ENSDNOG00000008665UPF3B8756.308Dasypus_novemcinctus
ENSTRUG00000010645upf3b5863.600ENSDNOG00000034391UPF3A5065.368Dasypus_novemcinctus
ENSTRUG00000010645upf3b9954.565ENSDORG00000006077Upf3b9854.681Dipodomys_ordii
ENSTRUG00000010645upf3b9342.402ENSETEG00000010110UPF3A8642.361Echinops_telfairi
ENSTRUG00000010645upf3b9457.284ENSEASG00005012919UPF3B7575.385Equus_asinus_asinus
ENSTRUG00000010645upf3b9457.284ENSECAG00000016947UPF3B8756.386Equus_caballus
ENSTRUG00000010645upf3b9961.077ENSELUG00000020389upf3b10065.226Esox_lucius
ENSTRUG00000010645upf3b8949.757ENSFCAG00000014602UPF3A8249.020Felis_catus
ENSTRUG00000010645upf3b9459.016ENSFCAG00000004388UPF3B8757.831Felis_catus
ENSTRUG00000010645upf3b9954.777ENSFALG00000001569UPF3B9754.656Ficedula_albicollis
ENSTRUG00000010645upf3b9955.204ENSFDAG00000018869UPF3B8757.590Fukomys_damarensis
ENSTRUG00000010645upf3b10073.810ENSFHEG00000017895upf3b10073.810Fundulus_heteroclitus
ENSTRUG00000010645upf3b10066.596ENSGMOG00000001621upf3b10066.737Gadus_morhua
ENSTRUG00000010645upf3b9956.823ENSGALG00000008618UPF3B9757.872Gallus_gallus
ENSTRUG00000010645upf3b10071.616ENSGAFG00000000829upf3b10074.017Gambusia_affinis
ENSTRUG00000010645upf3b10074.298ENSGACG00000017435upf3b9486.719Gasterosteus_aculeatus
ENSTRUG00000010645upf3b9760.329ENSGAGG00000001219UPF3B9958.369Gopherus_agassizii
ENSTRUG00000010645upf3b8949.029ENSGGOG00000015428UPF3A8249.020Gorilla_gorilla
ENSTRUG00000010645upf3b8738.250ENSGGOG00000041219-8641.481Gorilla_gorilla
ENSTRUG00000010645upf3b8837.871ENSGGOG00000043074-8141.278Gorilla_gorilla
ENSTRUG00000010645upf3b6169.767ENSGGOG00000023995UPF3B8756.835Gorilla_gorilla
ENSTRUG00000010645upf3b10077.874ENSHBUG00000017393upf3b10078.525Haplochromis_burtoni
ENSTRUG00000010645upf3b9855.484ENSHGLG00000019582-8756.867Heterocephalus_glaber_female
ENSTRUG00000010645upf3b6959.864ENSHGLG00000011189-8154.467Heterocephalus_glaber_female
ENSTRUG00000010645upf3b6959.864ENSHGLG00100001889-8153.026Heterocephalus_glaber_male
ENSTRUG00000010645upf3b9851.828ENSHGLG00100002042-8654.567Heterocephalus_glaber_male
ENSTRUG00000010645upf3b10068.172ENSHCOG00000017004upf3b10068.026Hippocampus_comes
ENSTRUG00000010645upf3b9969.053ENSIPUG00000019249upf3b10066.523Ictalurus_punctatus
ENSTRUG00000010645upf3b9854.428ENSSTOG00000001101UPF3B8756.867Ictidomys_tridecemlineatus
ENSTRUG00000010645upf3b9853.118ENSJJAG00000000053Upf3b8754.699Jaculus_jaculus
ENSTRUG00000010645upf3b10077.948ENSKMAG00000020300upf3b10077.948Kryptolebias_marmoratus
ENSTRUG00000010645upf3b6581.949ENSLBEG00000028689upf3b5784.291Labrus_bergylta
ENSTRUG00000010645upf3b10058.664ENSLACG00000008691UPF3B10059.375Latimeria_chalumnae
ENSTRUG00000010645upf3b9451.448ENSLOCG00000002665upf3a9151.259Lepisosteus_oculatus
ENSTRUG00000010645upf3b9766.219ENSLOCG00000015238upf3b9866.816Lepisosteus_oculatus
ENSTRUG00000010645upf3b9557.931ENSLAFG00000001267UPF3B8857.143Loxodonta_africana
ENSTRUG00000010645upf3b9146.851ENSMFAG00000045016UPF3A8147.407Macaca_fascicularis
ENSTRUG00000010645upf3b6070.079ENSMFAG00000045414UPF3B7475.000Macaca_fascicularis
ENSTRUG00000010645upf3b6070.079ENSMMUG00000020222UPF3B7475.000Macaca_mulatta
ENSTRUG00000010645upf3b9446.699ENSMMUG00000007449UPF3A8449.505Macaca_mulatta
ENSTRUG00000010645upf3b9147.607ENSMNEG00000036402UPF3A7949.257Macaca_nemestrina
ENSTRUG00000010645upf3b6070.079ENSMNEG00000039794UPF3B7475.000Macaca_nemestrina
ENSTRUG00000010645upf3b6864.261ENSMLEG00000010999UPF3B7475.000Mandrillus_leucophaeus
ENSTRUG00000010645upf3b9147.103ENSMLEG00000014726UPF3A8948.762Mandrillus_leucophaeus
ENSTRUG00000010645upf3b10078.308ENSMZEG00005007871upf3b10078.959Maylandia_zebra
ENSTRUG00000010645upf3b8649.602ENSMGAG00000014837UPF3A8949.733Meleagris_gallopavo
ENSTRUG00000010645upf3b8359.103ENSMGAG00000007728UPF3B9659.367Meleagris_gallopavo
ENSTRUG00000010645upf3b9949.670ENSMAUG00000008705Upf3b8358.040Mesocricetus_auratus
ENSTRUG00000010645upf3b5572.103ENSMICG00000001743UPF3B7072.973Microcebus_murinus
ENSTRUG00000010645upf3b9552.165ENSMOCG00000017893Upf3b8356.068Microtus_ochrogaster
ENSTRUG00000010645upf3b10078.947ENSMMOG00000004183upf3b10078.947Mola_mola
ENSTRUG00000010645upf3b9260.152ENSMODG00000010232UPF3B9361.443Monodelphis_domestica
ENSTRUG00000010645upf3b9250.116ENSMODG00000003159UPF3A9550.000Monodelphis_domestica
ENSTRUG00000010645upf3b10074.946ENSMALG00000008042upf3b10076.242Monopterus_albus
ENSTRUG00000010645upf3b9552.550MGP_CAROLIEiJ_G0032999Upf3b9351.837Mus_caroli
ENSTRUG00000010645upf3b9552.772ENSMUSG00000036572Upf3b9352.245Mus_musculus
ENSTRUG00000010645upf3b9552.993MGP_PahariEiJ_G0031543Upf3b9352.653Mus_pahari
ENSTRUG00000010645upf3b9552.772MGP_SPRETEiJ_G0034152Upf3b9352.245Mus_spretus
ENSTRUG00000010645upf3b9458.353ENSMPUG00000001531UPF3B8957.590Mustela_putorius_furo
ENSTRUG00000010645upf3b9146.766ENSMLUG00000015905UPF3A9348.411Myotis_lucifugus
ENSTRUG00000010645upf3b9458.879ENSMLUG00000010821UPF3B8757.590Myotis_lucifugus
ENSTRUG00000010645upf3b9852.688ENSNGAG00000008231Upf3b8356.566Nannospalax_galili
ENSTRUG00000010645upf3b9347.407ENSNLEG00000007563UPF3A8249.020Nomascus_leucogenys
ENSTRUG00000010645upf3b9255.220ENSNLEG00000014897UPF3B8856.835Nomascus_leucogenys
ENSTRUG00000010645upf3b7377.419ENSMEUG00000015615UPF3B7577.215Notamacropus_eugenii
ENSTRUG00000010645upf3b9853.579ENSODEG00000002186-8357.179Octodon_degus
ENSTRUG00000010645upf3b10077.682ENSONIG00000002536upf3b10078.326Oreochromis_niloticus
ENSTRUG00000010645upf3b8843.959ENSOANG00000006985-5355.947Ornithorhynchus_anatinus
ENSTRUG00000010645upf3b9153.827ENSOANG00000002594-9654.458Ornithorhynchus_anatinus
ENSTRUG00000010645upf3b9953.611ENSOCUG00000010213UPF3B8755.607Oryctolagus_cuniculus
ENSTRUG00000010645upf3b10072.331ENSORLG00000001026upf3b10072.331Oryzias_latipes
ENSTRUG00000010645upf3b9749.539ENSORLG00000010911upf3a8949.206Oryzias_latipes
ENSTRUG00000010645upf3b9347.856ENSORLG00020014317upf3a8250.000Oryzias_latipes_hni
ENSTRUG00000010645upf3b10072.331ENSORLG00020003758upf3b10072.331Oryzias_latipes_hni
ENSTRUG00000010645upf3b10072.113ENSORLG00015012954upf3b10072.113Oryzias_latipes_hsok
ENSTRUG00000010645upf3b8950.608ENSOMEG00000014425upf3a8252.058Oryzias_melastigma
ENSTRUG00000010645upf3b10072.867ENSOMEG00000014736upf3b10073.420Oryzias_melastigma
ENSTRUG00000010645upf3b9853.863ENSOGAG00000033003-9054.654Otolemur_garnettii
ENSTRUG00000010645upf3b9851.717ENSOGAG00000004643-8757.831Otolemur_garnettii
ENSTRUG00000010645upf3b8849.879ENSOARG00000009004UPF3A8448.681Ovis_aries
ENSTRUG00000010645upf3b9854.054ENSOARG00000016051-8755.452Ovis_aries
ENSTRUG00000010645upf3b9246.265ENSOARG00000007869-9545.874Ovis_aries
ENSTRUG00000010645upf3b9347.654ENSPPAG00000042267UPF3A8249.265Pan_paniscus
ENSTRUG00000010645upf3b6169.767ENSPPAG00000040390UPF3B8756.835Pan_paniscus
ENSTRUG00000010645upf3b9459.016ENSPPRG00000023536UPF3B8757.831Panthera_pardus
ENSTRUG00000010645upf3b9456.036ENSPTIG00000015264UPF3B8756.440Panthera_tigris_altaica
ENSTRUG00000010645upf3b8739.206ENSPTRG00000051640-8638.462Pan_troglodytes
ENSTRUG00000010645upf3b9434.467ENSPTRG00000041835-8538.765Pan_troglodytes
ENSTRUG00000010645upf3b8738.119ENSPTRG00000041187-8639.753Pan_troglodytes
ENSTRUG00000010645upf3b9347.654ENSPTRG00000006073UPF3A8249.265Pan_troglodytes
ENSTRUG00000010645upf3b6169.767ENSPTRG00000022228UPF3B8756.835Pan_troglodytes
ENSTRUG00000010645upf3b6864.261ENSPANG00000000900UPF3B7475.000Papio_anubis
ENSTRUG00000010645upf3b9347.525ENSPANG00000004346UPF3A8149.261Papio_anubis
ENSTRUG00000010645upf3b9964.565ENSPKIG00000019226upf3b9281.690Paramormyrops_kingsleyae
ENSTRUG00000010645upf3b9250.117ENSPSIG00000007468UPF3A9947.608Pelodiscus_sinensis
ENSTRUG00000010645upf3b6164.259ENSPSIG00000005833UPF3B9462.642Pelodiscus_sinensis
ENSTRUG00000010645upf3b6282.443ENSPMGG00000016067upf3b9582.759Periophthalmus_magnuspinnatus
ENSTRUG00000010645upf3b9952.027ENSPEMG00000012352Upf3b8358.250Peromyscus_maniculatus_bairdii
ENSTRUG00000010645upf3b9457.921ENSPCIG00000028914UPF3B8359.343Phascolarctos_cinereus
ENSTRUG00000010645upf3b7755.349ENSPCIG00000019590-7266.875Phascolarctos_cinereus
ENSTRUG00000010645upf3b5670.395ENSPLAG00000011960upf3a6571.681Poecilia_latipinna
ENSTRUG00000010645upf3b10072.707ENSPLAG00000019922upf3b10075.109Poecilia_latipinna
ENSTRUG00000010645upf3b10072.707ENSPLAG00000005105upf3b10075.109Poecilia_latipinna
ENSTRUG00000010645upf3b10072.489ENSPMEG00000023532upf3b10074.891Poecilia_mexicana
ENSTRUG00000010645upf3b8948.786ENSPPYG00000005536UPF3A8248.775Pongo_abelii
ENSTRUG00000010645upf3b9953.086ENSPCAG00000009464UPF3B8854.734Procavia_capensis
ENSTRUG00000010645upf3b9854.639ENSPCOG00000021960UPF3B8757.757Propithecus_coquereli
ENSTRUG00000010645upf3b9448.174ENSPVAG00000014075UPF3B8746.714Pteropus_vampyrus
ENSTRUG00000010645upf3b10079.303ENSPNYG00000009846upf3b10079.303Pundamilia_nyererei
ENSTRUG00000010645upf3b9770.824ENSPNAG00000021528upf3b9869.027Pygocentrus_nattereri
ENSTRUG00000010645upf3b9552.993ENSRNOG00000039994Upf3b8455.860Rattus_norvegicus
ENSTRUG00000010645upf3b9147.475ENSRBIG00000034007UPF3A8649.132Rhinopithecus_bieti
ENSTRUG00000010645upf3b6169.767ENSRROG00000041031UPF3B7475.000Rhinopithecus_roxellana
ENSTRUG00000010645upf3b8748.883ENSRROG00000012212UPF3A8148.883Rhinopithecus_roxellana
ENSTRUG00000010645upf3b9954.751ENSSBOG00000019740UPF3B9963.158Saimiri_boliviensis_boliviensis
ENSTRUG00000010645upf3b9956.067ENSSHAG00000008634UPF3B9556.798Sarcophilus_harrisii
ENSTRUG00000010645upf3b9350.000ENSSHAG00000009895UPF3A9749.885Sarcophilus_harrisii
ENSTRUG00000010645upf3b9967.912ENSSFOG00015005614upf3b10068.053Scleropages_formosus
ENSTRUG00000010645upf3b8951.589ENSSFOG00015021851upf3a8350.864Scleropages_formosus
ENSTRUG00000010645upf3b10072.747ENSSMAG00000012913upf3b10085.938Scophthalmus_maximus
ENSTRUG00000010645upf3b8946.324ENSSDUG00000009680upf3a6473.333Seriola_dumerili
ENSTRUG00000010645upf3b10078.525ENSSDUG00000005682upf3b10079.610Seriola_dumerili
ENSTRUG00000010645upf3b10078.959ENSSLDG00000003130upf3b10080.043Seriola_lalandi_dorsalis
ENSTRUG00000010645upf3b9054.118ENSSARG00000004147UPF3B9755.269Sorex_araneus
ENSTRUG00000010645upf3b9956.367ENSSPUG00000013082UPF3B9955.094Sphenodon_punctatus
ENSTRUG00000010645upf3b10078.214ENSSPAG00000009989upf3b10078.214Stegastes_partitus
ENSTRUG00000010645upf3b9457.611ENSSSCG00000012617UPF3B8358.838Sus_scrofa
ENSTRUG00000010645upf3b9259.747ENSTGUG00000003413UPF3B9661.259Taeniopygia_guttata
ENSTRUG00000010645upf3b9350.490ENSTGUG00000009493UPF3A9851.605Taeniopygia_guttata
ENSTRUG00000010645upf3b9983.040ENSTNIG00000015763upf3b10081.319Tetraodon_nigroviridis
ENSTRUG00000010645upf3b9846.331ENSTBEG00000003229UPF3B8747.196Tupaia_belangeri
ENSTRUG00000010645upf3b9953.725ENSUAMG00000024565UPF3B7573.846Ursus_americanus
ENSTRUG00000010645upf3b9154.306ENSUMAG00000002150UPF3B8854.217Ursus_maritimus
ENSTRUG00000010645upf3b8656.296ENSVPAG00000009971UPF3B9654.839Vicugna_pacos
ENSTRUG00000010645upf3b8649.626ENSVPAG00000003525UPF3A9947.140Vicugna_pacos
ENSTRUG00000010645upf3b9854.701ENSVVUG00000011594UPF3B9763.158Vulpes_vulpes
ENSTRUG00000010645upf3b9851.860ENSXETG00000007440upf3b8575.000Xenopus_tropicalis
ENSTRUG00000010645upf3b10066.376ENSXCOG00000016586upf3b9885.714Xiphophorus_couchianus
ENSTRUG00000010645upf3b10070.742ENSXMAG00000013680upf3b10073.144Xiphophorus_maculatus
ENSTRUG00000010645upf3b5768.153ENSXMAG00000013452upf3a8450.000Xiphophorus_maculatus

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