EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000010701 (Gene tree)
Gene ID: -
Gene Symbol: SMARCAL1
Alias: HARP|HHARP
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 6483 bases
Position: chr1:16577146-16583628
Accession: 101062074
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000026994	ResIII	PF04851.15	1.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000027103	SMARCAL1-201	2352	XM_011610615	ENSTRUP00000026994	783 (aa)	XP_011608917	H2TQN7

Gene Model

Click here to download ENSTRUG00000010701's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000010701's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000010701	SMARCAL1	92	53.066	ENSG00000138375	SMARCAL1	99	65.839	Homo_sapiens
ENSTRUG00000010701	SMARCAL1	99	64.356	ENSAPOG00000020156	SMARCAL1	99	63.956	Acanthochromis_polyacanthus
ENSTRUG00000010701	SMARCAL1	92	67.416	ENSACIG00000001500	smarcal1	96	67.416	Amphilophus_citrinellus
ENSTRUG00000010701	SMARCAL1	99	64.739	ENSAOCG00000014266	SMARCAL1	99	64.739	Amphiprion_ocellaris
ENSTRUG00000010701	SMARCAL1	99	65.188	ENSAPEG00000015861	SMARCAL1	98	65.188	Amphiprion_percula
ENSTRUG00000010701	SMARCAL1	98	65.677	ENSATEG00000020624	SMARCAL1	98	65.897	Anabas_testudineus
ENSTRUG00000010701	SMARCAL1	81	56.745	ENSAPLG00000009864	SMARCAL1	75	56.393	Anas_platyrhynchos
ENSTRUG00000010701	SMARCAL1	83	56.148	ENSACAG00000004612	SMARCAL1	74	56.011	Anolis_carolinensis
ENSTRUG00000010701	SMARCAL1	99	64.166	ENSACLG00000015990	SMARCAL1	98	64.318	Astatotilapia_calliptera
ENSTRUG00000010701	SMARCAL1	98	58.361	ENSAMXG00000003350	smarcal1	97	58.361	Astyanax_mexicanus
ENSTRUG00000010701	SMARCAL1	79	62.145	ENSCPBG00000013599	SMARCAL1	68	62.145	Chrysemys_picta_bellii
ENSTRUG00000010701	SMARCAL1	71	47.930	ENSCING00000009308	-	100	47.930	Ciona_intestinalis
ENSTRUG00000010701	SMARCAL1	99	61.685	ENSCSEG00000010785	SMARCAL1	99	62.247	Cynoglossus_semilaevis
ENSTRUG00000010701	SMARCAL1	98	63.867	ENSCVAG00000018780	SMARCAL1	96	62.057	Cyprinodon_variegatus
ENSTRUG00000010701	SMARCAL1	56	50.577	ENSEBUG00000011906	SMARCAL1	72	50.577	Eptatretus_burgeri
ENSTRUG00000010701	SMARCAL1	79	68.215	ENSELUG00000010440	-	67	67.719	Esox_lucius
ENSTRUG00000010701	SMARCAL1	83	55.299	ENSFALG00000003981	SMARCAL1	75	55.299	Ficedula_albicollis
ENSTRUG00000010701	SMARCAL1	98	64.213	ENSFHEG00000008380	SMARCAL1	97	65.252	Fundulus_heteroclitus
ENSTRUG00000010701	SMARCAL1	61	65.768	ENSGMOG00000010034	smarcal1	93	64.271	Gadus_morhua
ENSTRUG00000010701	SMARCAL1	83	55.252	ENSGALG00000011475	RPL37A	75	55.252	Gallus_gallus
ENSTRUG00000010701	SMARCAL1	90	68.207	ENSGACG00000006073	SMARCAL1	100	79.962	Gasterosteus_aculeatus
ENSTRUG00000010701	SMARCAL1	72	59.841	ENSGAGG00000015660	SMARCAL1	70	59.196	Gopherus_agassizii
ENSTRUG00000010701	SMARCAL1	100	63.455	ENSHBUG00000002973	smarcal1	99	63.455	Haplochromis_burtoni
ENSTRUG00000010701	SMARCAL1	96	63.423	ENSHCOG00000017921	smarcal1	98	63.423	Hippocampus_comes
ENSTRUG00000010701	SMARCAL1	98	63.470	ENSKMAG00000012023	SMARCAL1	99	63.844	Kryptolebias_marmoratus
ENSTRUG00000010701	SMARCAL1	90	62.980	ENSLBEG00000003493	smarcal1	100	63.127	Labrus_bergylta
ENSTRUG00000010701	SMARCAL1	92	66.087	ENSLBEG00000022915	smarcal1	99	66.087	Labrus_bergylta
ENSTRUG00000010701	SMARCAL1	79	53.191	ENSLACG00000010974	SMARCAL1	73	53.191	Latimeria_chalumnae
ENSTRUG00000010701	SMARCAL1	92	58.223	ENSLOCG00000009637	smarcal1	99	58.223	Lepisosteus_oculatus
ENSTRUG00000010701	SMARCAL1	99	67.684	ENSMAMG00000000828	SMARCAL1	99	67.684	Mastacembelus_armatus
ENSTRUG00000010701	SMARCAL1	99	64.166	ENSMZEG00005007660	SMARCAL1	98	64.318	Maylandia_zebra
ENSTRUG00000010701	SMARCAL1	98	49.674	ENSMGAG00000011658	SMARCAL1	97	49.565	Meleagris_gallopavo
ENSTRUG00000010701	SMARCAL1	92	66.416	ENSMMOG00000003842	smarcal1	94	66.416	Mola_mola
ENSTRUG00000010701	SMARCAL1	97	57.061	ENSMODG00000015544	SMARCAL1	96	57.061	Monodelphis_domestica
ENSTRUG00000010701	SMARCAL1	91	66.375	ENSNBRG00000016273	smarcal1	97	66.375	Neolamprologus_brichardi
ENSTRUG00000010701	SMARCAL1	70	59.806	ENSMEUG00000004395	SMARCAL1	73	59.459	Notamacropus_eugenii
ENSTRUG00000010701	SMARCAL1	100	63.385	ENSONIG00000009036	smarcal1	100	72.901	Oreochromis_niloticus
ENSTRUG00000010701	SMARCAL1	99	62.883	ENSORLG00000016455	SMARCAL1	98	62.955	Oryzias_latipes
ENSTRUG00000010701	SMARCAL1	99	62.656	ENSORLG00020001610	SMARCAL1	98	62.656	Oryzias_latipes_hni
ENSTRUG00000010701	SMARCAL1	99	62.770	ENSORLG00015001865	SMARCAL1	98	62.770	Oryzias_latipes_hsok
ENSTRUG00000010701	SMARCAL1	98	65.448	ENSOMEG00000001845	smarcal1	97	65.448	Oryzias_melastigma
ENSTRUG00000010701	SMARCAL1	97	63.921	ENSPMGG00000019092	SMARCAL1	97	64.195	Periophthalmus_magnuspinnatus
ENSTRUG00000010701	SMARCAL1	84	55.220	ENSPCIG00000022514	SMARCAL1	76	56.369	Phascolarctos_cinereus
ENSTRUG00000010701	SMARCAL1	98	64.132	ENSPFOG00000000560	SMARCAL1	97	63.883	Poecilia_formosa
ENSTRUG00000010701	SMARCAL1	98	64.132	ENSPMEG00000018146	SMARCAL1	97	63.883	Poecilia_mexicana
ENSTRUG00000010701	SMARCAL1	59	84.634	ENSPREG00000009591	SMARCAL1	84	84.634	Poecilia_reticulata
ENSTRUG00000010701	SMARCAL1	99	59.170	ENSPNAG00000014900	smarcal1	92	59.112	Pygocentrus_nattereri
ENSTRUG00000010701	SMARCAL1	99	48.053	ENSSHAG00000013538	SMARCAL1	98	48.053	Sarcophilus_harrisii
ENSTRUG00000010701	SMARCAL1	99	63.746	ENSSMAG00000010427	SMARCAL1	98	63.965	Scophthalmus_maximus
ENSTRUG00000010701	SMARCAL1	98	66.556	ENSSDUG00000017470	SMARCAL1	95	66.704	Seriola_dumerili
ENSTRUG00000010701	SMARCAL1	99	65.795	ENSSLDG00000007224	SMARCAL1	99	65.939	Seriola_lalandi_dorsalis
ENSTRUG00000010701	SMARCAL1	80	58.205	ENSSPUG00000015369	SMARCAL1	71	58.205	Sphenodon_punctatus
ENSTRUG00000010701	SMARCAL1	92	66.791	ENSSPAG00000003742	smarcal1	98	67.244	Stegastes_partitus
ENSTRUG00000010701	SMARCAL1	79	54.876	ENSSSCG00000035501	SMARCAL1	76	54.876	Sus_scrofa
ENSTRUG00000010701	SMARCAL1	77	57.313	ENSTGUG00000005079	SMARCAL1	100	57.313	Taeniopygia_guttata
ENSTRUG00000010701	SMARCAL1	81	48.023	ENSTTRG00000009001	SMARCAL1	74	48.023	Tursiops_truncatus
ENSTRUG00000010701	SMARCAL1	98	51.348	ENSXETG00000000465	smarcal1	97	51.241	Xenopus_tropicalis