EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000011085 (Gene tree)
Gene ID: 101075802
Gene Symbol: pabpc1l
Alias: fi20g03|wu:fi20g03|zgc:55855
Full Name: embryonic polyadenylate-binding protein-like
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 3083 bases
Position: chr3:9575842-9578924
Accession: 101075802
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000027983	PABP	PF00658.18	3.9e-24	1	1
ENSTRUP00000027983	RRM_5	PF13893.6	2.7e-08	1	2
ENSTRUP00000027983	RRM_5	PF13893.6	2.7e-08	2	2
ENSTRUP00000027983	RRM_1	PF00076.22	5.6e-88	1	4
ENSTRUP00000027983	RRM_1	PF00076.22	5.6e-88	2	4
ENSTRUP00000027983	RRM_1	PF00076.22	5.6e-88	3	4
ENSTRUP00000027983	RRM_1	PF00076.22	5.6e-88	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000028093	-	1889	XM_011602532	ENSTRUP00000027983	616 (aa)	XP_011600834	H2TTH5

Gene Model

Click here to download ENSTRUG00000011085's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03013	RNA transport	KEGG
tru03015	mRNA surveillance pathway	KEGG
tru03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000011085's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000011085	pabpc1l	59	36.170	ENSTRUG00000015362	hnrnpa0b	52	36.170
ENSTRUG00000011085	pabpc1l	97	68.871	ENSTRUG00000011577	-	96	68.831
ENSTRUG00000011085	pabpc1l	97	68.387	ENSTRUG00000003767	-	95	68.226
ENSTRUG00000011085	pabpc1l	68	31.183	ENSTRUG00000015136	-	84	31.183
ENSTRUG00000011085	pabpc1l	97	66.447	ENSTRUG00000005907	pabpc4	95	66.447
ENSTRUG00000011085	pabpc1l	59	45.333	ENSTRUG00000021378	-	65	45.333
ENSTRUG00000011085	pabpc1l	59	37.037	ENSTRUG00000007296	-	84	37.037
ENSTRUG00000011085	pabpc1l	59	40.789	ENSTRUG00000016032	rbm19	57	40.789
ENSTRUG00000011085	pabpc1l	60	31.351	ENSTRUG00000008185	ncl	51	31.609

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000011085	pabpc1l	97	67.045	ENSG00000101104	PABPC1L	98	77.160	Homo_sapiens
ENSTRUG00000011085	pabpc1l	97	81.260	ENSAPOG00000010842	pabpc1l	97	81.260	Acanthochromis_polyacanthus
ENSTRUG00000011085	pabpc1l	97	63.108	ENSAMEG00000004099	PABPC1L	98	63.208	Ailuropoda_melanoleuca
ENSTRUG00000011085	pabpc1l	96	91.605	ENSACIG00000021004	-	96	91.605	Amphilophus_citrinellus
ENSTRUG00000011085	pabpc1l	97	82.537	ENSAOCG00000006167	-	97	82.537	Amphiprion_ocellaris
ENSTRUG00000011085	pabpc1l	97	81.518	ENSAPEG00000010558	-	99	88.532	Amphiprion_percula
ENSTRUG00000011085	pabpc1l	97	85.714	ENSATEG00000007428	pabpc1l	97	86.371	Anabas_testudineus
ENSTRUG00000011085	pabpc1l	96	70.016	ENSAPLG00000008415	PABPC1L	97	69.984	Anas_platyrhynchos
ENSTRUG00000011085	pabpc1l	97	73.127	ENSACAG00000011841	PABPC1L	96	73.127	Anolis_carolinensis
ENSTRUG00000011085	pabpc1l	97	66.558	ENSANAG00000026826	PABPC1L	97	66.558	Aotus_nancymaae
ENSTRUG00000011085	pabpc1l	97	87.315	ENSACLG00000024791	pabpc1l	97	87.315	Astatotilapia_calliptera
ENSTRUG00000011085	pabpc1l	97	78.818	ENSAMXG00000013552	pabpc1l	97	78.818	Astyanax_mexicanus
ENSTRUG00000011085	pabpc1l	63	87.500	ENSBTAG00000055300	-	100	87.500	Bos_taurus
ENSTRUG00000011085	pabpc1l	63	65.399	ENSBTAG00000016849	PABPC1L	80	65.399	Bos_taurus
ENSTRUG00000011085	pabpc1l	59	79.885	ENSCJAG00000038506	-	100	79.885	Callithrix_jacchus
ENSTRUG00000011085	pabpc1l	97	66.883	ENSCJAG00000017628	PABPC1L	97	66.883	Callithrix_jacchus
ENSTRUG00000011085	pabpc1l	97	63.651	ENSCAFG00000009573	PABPC1L	98	63.651	Canis_familiaris
ENSTRUG00000011085	pabpc1l	97	67.594	ENSCAFG00020013828	PABPC1L	97	67.594	Canis_lupus_dingo
ENSTRUG00000011085	pabpc1l	99	67.695	ENSCHIG00000025759	PABPC1L	92	67.695	Capra_hircus
ENSTRUG00000011085	pabpc1l	97	66.883	ENSTSYG00000006645	PABPC1L	97	66.883	Carlito_syrichta
ENSTRUG00000011085	pabpc1l	96	62.546	ENSCAPG00000014519	PABPC1L	96	62.546	Cavia_aperea
ENSTRUG00000011085	pabpc1l	97	64.773	ENSCPOG00000013633	PABPC1L	97	64.773	Cavia_porcellus
ENSTRUG00000011085	pabpc1l	97	66.234	ENSCCAG00000023338	PABPC1L	97	66.558	Cebus_capucinus
ENSTRUG00000011085	pabpc1l	97	67.208	ENSCATG00000034065	PABPC1L	97	67.208	Cercocebus_atys
ENSTRUG00000011085	pabpc1l	97	63.005	ENSCLAG00000005298	PABPC1L	97	64.169	Chinchilla_lanigera
ENSTRUG00000011085	pabpc1l	97	67.045	ENSCSAG00000014242	PABPC1L	97	67.045	Chlorocebus_sabaeus
ENSTRUG00000011085	pabpc1l	54	83.969	ENSCPBG00000007810	-	83	83.969	Chrysemys_picta_bellii
ENSTRUG00000011085	pabpc1l	71	78.685	ENSCPBG00000017755	-	99	78.685	Chrysemys_picta_bellii
ENSTRUG00000011085	pabpc1l	95	49.592	ENSCING00000002796	-	94	49.592	Ciona_intestinalis
ENSTRUG00000011085	pabpc1l	97	59.411	ENSCSAVG00000004246	-	85	71.523	Ciona_savignyi
ENSTRUG00000011085	pabpc1l	97	57.005	ENSCSAVG00000003102	-	100	84.564	Ciona_savignyi
ENSTRUG00000011085	pabpc1l	97	64.160	ENSCANG00000037530	PABPC1L	97	64.160	Colobus_angolensis_palliatus
ENSTRUG00000011085	pabpc1l	94	60.201	ENSCGRG00001021938	Pabpc1l	97	60.548	Cricetulus_griseus_chok1gshd
ENSTRUG00000011085	pabpc1l	94	60.201	ENSCGRG00000007946	Pabpc1l	97	60.548	Cricetulus_griseus_crigri
ENSTRUG00000011085	pabpc1l	97	76.087	ENSCSEG00000021295	pabpc1l	96	76.087	Cynoglossus_semilaevis
ENSTRUG00000011085	pabpc1l	97	84.375	ENSCVAG00000015943	-	86	97.710	Cyprinodon_variegatus
ENSTRUG00000011085	pabpc1l	97	79.736	ENSDARG00000002597	pabpc1l	88	96.154	Danio_rerio
ENSTRUG00000011085	pabpc1l	97	68.144	ENSDNOG00000048450	PABPC1L	97	68.144	Dasypus_novemcinctus
ENSTRUG00000011085	pabpc1l	97	66.069	ENSDORG00000001067	Pabpc1l	97	66.069	Dipodomys_ordii
ENSTRUG00000011085	pabpc1l	94	76.829	ENSETEG00000009969	PABPC1L	69	76.829	Echinops_telfairi
ENSTRUG00000011085	pabpc1l	52	72.892	ENSEASG00005023407	-	67	72.892	Equus_asinus_asinus
ENSTRUG00000011085	pabpc1l	63	85.119	ENSEASG00005023408	-	100	85.119	Equus_asinus_asinus
ENSTRUG00000011085	pabpc1l	65	66.816	ENSECAG00000040139	-	81	66.816	Equus_caballus
ENSTRUG00000011085	pabpc1l	97	65.898	ENSEEUG00000005978	PABPC1L	97	65.898	Erinaceus_europaeus
ENSTRUG00000011085	pabpc1l	97	81.148	ENSELUG00000001811	pabpc1l	97	81.148	Esox_lucius
ENSTRUG00000011085	pabpc1l	97	68.464	ENSFCAG00000011692	PABPC1L	97	68.464	Felis_catus
ENSTRUG00000011085	pabpc1l	85	72.472	ENSFALG00000005372	PABPC1L	97	68.750	Ficedula_albicollis
ENSTRUG00000011085	pabpc1l	97	64.145	ENSFDAG00000008291	PABPC1L	96	64.803	Fukomys_damarensis
ENSTRUG00000011085	pabpc1l	97	86.326	ENSFHEG00000003398	pabpc1l	97	86.326	Fundulus_heteroclitus
ENSTRUG00000011085	pabpc1l	97	81.549	ENSGMOG00000004437	pabpc1l	96	81.549	Gadus_morhua
ENSTRUG00000011085	pabpc1l	93	65.913	ENSGALG00000004123	PABPC1L	99	77.011	Gallus_gallus
ENSTRUG00000011085	pabpc1l	97	81.221	ENSGAFG00000021057	pabpc1l	97	81.221	Gambusia_affinis
ENSTRUG00000011085	pabpc1l	97	86.020	ENSGACG00000002792	pabpc1l	97	86.020	Gasterosteus_aculeatus
ENSTRUG00000011085	pabpc1l	97	72.727	ENSGAGG00000000589	PABPC1L	96	72.727	Gopherus_agassizii
ENSTRUG00000011085	pabpc1l	97	67.045	ENSGGOG00000004584	PABPC1L	97	67.045	Gorilla_gorilla
ENSTRUG00000011085	pabpc1l	97	86.985	ENSHBUG00000006134	pabpc1l	97	86.985	Haplochromis_burtoni
ENSTRUG00000011085	pabpc1l	97	65.253	ENSHGLG00000008434	PABPC1L	97	65.253	Heterocephalus_glaber_female
ENSTRUG00000011085	pabpc1l	97	65.253	ENSHGLG00100012151	PABPC1L	97	65.253	Heterocephalus_glaber_male
ENSTRUG00000011085	pabpc1l	59	85.955	ENSHGLG00100019506	-	100	85.955	Heterocephalus_glaber_male
ENSTRUG00000011085	pabpc1l	96	84.021	ENSHCOG00000009270	pabpc1l	97	84.021	Hippocampus_comes
ENSTRUG00000011085	pabpc1l	59	62.644	ENSIPUG00000006760	-	88	62.644	Ictalurus_punctatus
ENSTRUG00000011085	pabpc1l	97	77.504	ENSIPUG00000012602	pabpc1l	97	77.504	Ictalurus_punctatus
ENSTRUG00000011085	pabpc1l	59	62.644	ENSIPUG00000006780	-	85	62.644	Ictalurus_punctatus
ENSTRUG00000011085	pabpc1l	97	66.558	ENSSTOG00000003739	PABPC1L	97	66.558	Ictidomys_tridecemlineatus
ENSTRUG00000011085	pabpc1l	93	51.515	ENSJJAG00000022406	Pabpc1l	96	50.891	Jaculus_jaculus
ENSTRUG00000011085	pabpc1l	97	84.577	ENSKMAG00000016847	pabpc1l	98	83.779	Kryptolebias_marmoratus
ENSTRUG00000011085	pabpc1l	97	87.315	ENSLBEG00000010084	pabpc1l	97	87.315	Labrus_bergylta
ENSTRUG00000011085	pabpc1l	97	71.865	ENSLACG00000005762	PABPC1L	98	74.721	Latimeria_chalumnae
ENSTRUG00000011085	pabpc1l	97	81.209	ENSLOCG00000007519	pabpc1l	96	81.209	Lepisosteus_oculatus
ENSTRUG00000011085	pabpc1l	97	66.721	ENSLAFG00000003553	PABPC1L	98	66.721	Loxodonta_africana
ENSTRUG00000011085	pabpc1l	97	67.532	ENSMFAG00000040365	PABPC1L	97	67.532	Macaca_fascicularis
ENSTRUG00000011085	pabpc1l	97	66.558	ENSMNEG00000032298	PABPC1L	97	66.558	Macaca_nemestrina
ENSTRUG00000011085	pabpc1l	97	67.208	ENSMLEG00000043139	PABPC1L	97	67.208	Mandrillus_leucophaeus
ENSTRUG00000011085	pabpc1l	97	87.789	ENSMAMG00000011854	pabpc1l	97	87.789	Mastacembelus_armatus
ENSTRUG00000011085	pabpc1l	97	87.315	ENSMZEG00005023713	pabpc1l	97	87.315	Maylandia_zebra
ENSTRUG00000011085	pabpc1l	97	71.732	ENSMGAG00000003674	PABPC1L	96	71.732	Meleagris_gallopavo
ENSTRUG00000011085	pabpc1l	97	59.516	ENSMOCG00000013186	Pabpc1l	97	59.516	Microtus_ochrogaster
ENSTRUG00000011085	pabpc1l	97	88.284	ENSMMOG00000020574	-	93	96.923	Mola_mola
ENSTRUG00000011085	pabpc1l	98	70.636	ENSMODG00000016198	PABPC1L	99	70.636	Monodelphis_domestica
ENSTRUG00000011085	pabpc1l	97	86.799	ENSMALG00000021622	pabpc1l	100	86.799	Monopterus_albus
ENSTRUG00000011085	pabpc1l	94	60.434	MGP_CAROLIEiJ_G0024627	Pabpc1l	97	60.611	Mus_caroli
ENSTRUG00000011085	pabpc1l	94	60.434	ENSMUSG00000054582	Pabpc1l	97	60.611	Mus_musculus
ENSTRUG00000011085	pabpc1l	94	60.678	MGP_PahariEiJ_G0026071	Pabpc1l	97	60.848	Mus_pahari
ENSTRUG00000011085	pabpc1l	94	60.434	MGP_SPRETEiJ_G0025549	Pabpc1l	97	60.611	Mus_spretus
ENSTRUG00000011085	pabpc1l	97	68.852	ENSMPUG00000017646	PABPC1L	97	68.852	Mustela_putorius_furo
ENSTRUG00000011085	pabpc1l	97	65.323	ENSMLUG00000006324	PABPC1L	96	65.323	Myotis_lucifugus
ENSTRUG00000011085	pabpc1l	94	62.689	ENSNGAG00000010458	Pabpc1l	97	62.621	Nannospalax_galili
ENSTRUG00000011085	pabpc1l	97	86.634	ENSNBRG00000016633	pabpc1l	97	86.634	Neolamprologus_brichardi
ENSTRUG00000011085	pabpc1l	90	64.937	ENSMEUG00000007905	-	89	64.937	Notamacropus_eugenii
ENSTRUG00000011085	pabpc1l	97	66.126	ENSOPRG00000011846	PABPC1L	97	66.126	Ochotona_princeps
ENSTRUG00000011085	pabpc1l	58	80.000	ENSODEG00000002920	-	97	80.000	Octodon_degus
ENSTRUG00000011085	pabpc1l	93	64.870	ENSODEG00000015482	PABPC1L	96	64.870	Octodon_degus
ENSTRUG00000011085	pabpc1l	97	87.315	ENSONIG00000017314	pabpc1l	97	87.315	Oreochromis_niloticus
ENSTRUG00000011085	pabpc1l	90	61.307	ENSOANG00000015793	-	100	61.307	Ornithorhynchus_anatinus
ENSTRUG00000011085	pabpc1l	97	62.853	ENSOCUG00000003005	PABPC1L	98	63.323	Oryctolagus_cuniculus
ENSTRUG00000011085	pabpc1l	96	88.489	ENSORLG00000010322	pabpc1l	96	88.489	Oryzias_latipes
ENSTRUG00000011085	pabpc1l	96	88.489	ENSORLG00020021193	pabpc1l	96	88.489	Oryzias_latipes_hni
ENSTRUG00000011085	pabpc1l	98	88.489	ENSORLG00015017018	pabpc1l	99	88.489	Oryzias_latipes_hsok
ENSTRUG00000011085	pabpc1l	97	81.447	ENSOMEG00000010789	pabpc1l	97	81.447	Oryzias_melastigma
ENSTRUG00000011085	pabpc1l	97	66.667	ENSOGAG00000032999	PABPC1L	97	66.667	Otolemur_garnettii
ENSTRUG00000011085	pabpc1l	97	67.103	ENSOARG00000004578	PABPC1L	97	67.103	Ovis_aries
ENSTRUG00000011085	pabpc1l	97	67.208	ENSPPAG00000039677	PABPC1L	97	67.208	Pan_paniscus
ENSTRUG00000011085	pabpc1l	67	68.210	ENSPPRG00000019327	-	98	68.210	Panthera_pardus
ENSTRUG00000011085	pabpc1l	96	68.430	ENSPTIG00000006524	PABPC1L	97	68.430	Panthera_tigris_altaica
ENSTRUG00000011085	pabpc1l	63	77.469	ENSPTRG00000013531	PABPC1L	98	77.469	Pan_troglodytes
ENSTRUG00000011085	pabpc1l	97	67.208	ENSPANG00000018788	PABPC1L	97	67.208	Papio_anubis
ENSTRUG00000011085	pabpc1l	53	83.969	ENSPKIG00000016810	-	93	83.969	Paramormyrops_kingsleyae
ENSTRUG00000011085	pabpc1l	97	79.310	ENSPKIG00000007322	pabpc1l	97	79.310	Paramormyrops_kingsleyae
ENSTRUG00000011085	pabpc1l	67	80.630	ENSPSIG00000013289	PABPC1L	98	80.630	Pelodiscus_sinensis
ENSTRUG00000011085	pabpc1l	57	81.500	ENSPMGG00000023121	-	93	81.500	Periophthalmus_magnuspinnatus
ENSTRUG00000011085	pabpc1l	63	95.556	ENSPMGG00000023117	pabpc1l	99	95.556	Periophthalmus_magnuspinnatus
ENSTRUG00000011085	pabpc1l	97	59.968	ENSPEMG00000020671	Pabpc1l	97	60.289	Peromyscus_maniculatus_bairdii
ENSTRUG00000011085	pabpc1l	97	86.161	ENSPFOG00000013241	pabpc1l	97	86.161	Poecilia_formosa
ENSTRUG00000011085	pabpc1l	97	85.832	ENSPLAG00000017490	-	97	85.832	Poecilia_latipinna
ENSTRUG00000011085	pabpc1l	53	99.231	ENSPLAG00000023686	-	92	99.231	Poecilia_latipinna
ENSTRUG00000011085	pabpc1l	53	99.231	ENSPMEG00000009185	-	88	99.231	Poecilia_mexicana
ENSTRUG00000011085	pabpc1l	97	85.809	ENSPMEG00000007677	pabpc1l	97	85.809	Poecilia_mexicana
ENSTRUG00000011085	pabpc1l	67	93.187	ENSPREG00000015886	pabpc1l	99	93.187	Poecilia_reticulata
ENSTRUG00000011085	pabpc1l	97	67.370	ENSPPYG00000011042	PABPC1L	97	67.370	Pongo_abelii
ENSTRUG00000011085	pabpc1l	67	85.938	ENSPCAG00000011787	-	75	85.938	Procavia_capensis
ENSTRUG00000011085	pabpc1l	97	67.541	ENSPCOG00000020630	PABPC1L	97	67.541	Propithecus_coquereli
ENSTRUG00000011085	pabpc1l	97	66.939	ENSPVAG00000012663	PABPC1L	97	66.939	Pteropus_vampyrus
ENSTRUG00000011085	pabpc1l	96	87.298	ENSPNYG00000004101	pabpc1l	96	87.298	Pundamilia_nyererei
ENSTRUG00000011085	pabpc1l	97	72.951	ENSPNAG00000021248	pabpc1l	97	72.951	Pygocentrus_nattereri
ENSTRUG00000011085	pabpc1l	94	60.033	ENSRNOG00000012750	Pabpc1l	97	60.386	Rattus_norvegicus
ENSTRUG00000011085	pabpc1l	97	67.208	ENSRBIG00000035381	PABPC1L	97	67.208	Rhinopithecus_bieti
ENSTRUG00000011085	pabpc1l	97	67.045	ENSRROG00000044498	PABPC1L	97	67.045	Rhinopithecus_roxellana
ENSTRUG00000011085	pabpc1l	97	66.558	ENSSBOG00000009532	-	97	66.558	Saimiri_boliviensis_boliviensis
ENSTRUG00000011085	pabpc1l	96	65.553	ENSSHAG00000011446	PABPC1L	97	65.553	Sarcophilus_harrisii
ENSTRUG00000011085	pabpc1l	97	78.525	ENSSFOG00015017304	pabpc1l	97	78.525	Scleropages_formosus
ENSTRUG00000011085	pabpc1l	97	91.928	ENSSMAG00000010516	pabpc1l	98	99.225	Scophthalmus_maximus
ENSTRUG00000011085	pabpc1l	97	88.099	ENSSDUG00000014743	pabpc1l	97	88.099	Seriola_dumerili
ENSTRUG00000011085	pabpc1l	96	90.931	ENSSLDG00000006981	pabpc1l	99	91.781	Seriola_lalandi_dorsalis
ENSTRUG00000011085	pabpc1l	97	72.123	ENSSPUG00000004233	PABPC1L	96	72.123	Sphenodon_punctatus
ENSTRUG00000011085	pabpc1l	97	74.585	ENSSPAG00000017137	pabpc1l	97	74.585	Stegastes_partitus
ENSTRUG00000011085	pabpc1l	97	68.189	ENSSSCG00000007382	PABPC1L	97	68.189	Sus_scrofa
ENSTRUG00000011085	pabpc1l	97	70.947	ENSTGUG00000005114	PABPC1L	97	70.947	Taeniopygia_guttata
ENSTRUG00000011085	pabpc1l	97	94.030	ENSTNIG00000017903	pabpc1l	96	94.030	Tetraodon_nigroviridis
ENSTRUG00000011085	pabpc1l	93	77.397	ENSTBEG00000002851	PABPC1L	77	77.397	Tupaia_belangeri
ENSTRUG00000011085	pabpc1l	95	65.709	ENSTTRG00000007618	PABPC1L	100	65.789	Tursiops_truncatus
ENSTRUG00000011085	pabpc1l	97	66.283	ENSUAMG00000017682	PABPC1L	96	66.283	Ursus_americanus
ENSTRUG00000011085	pabpc1l	66	74.366	ENSUMAG00000025436	PABPC1L	91	74.366	Ursus_maritimus
ENSTRUG00000011085	pabpc1l	96	75.494	ENSVVUG00000018939	PABPC1L	95	75.494	Vulpes_vulpes
ENSTRUG00000011085	pabpc1l	97	69.558	ENSXETG00000022831	pabpc1l	96	69.558	Xenopus_tropicalis
ENSTRUG00000011085	pabpc1l	96	88.626	ENSXCOG00000005459	pabpc1l	99	94.326	Xiphophorus_couchianus
ENSTRUG00000011085	pabpc1l	97	85.502	ENSXMAG00000017135	pabpc1l	97	85.502	Xiphophorus_maculatus