EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000011335 (Gene tree)
Gene ID: 101071804
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1-like
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 5871 bases
Position: chr8:3900389-3906259
Accession: 101071804
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000028608	RRM_1	PF00076.22	3e-31	1	2
ENSTRUP00000028608	RRM_1	PF00076.22	3e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000028724	-	3344	XM_003966461	ENSTRUP00000028608	515 (aa)	XP_003966510	H2TV99

Gene Model

Click here to download ENSTRUG00000011335's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000011335's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000011335	pspc1	73	57.447	ENSTRUG00000005554	nono	96	53.075
ENSTRUG00000011335	pspc1	88	50.976	ENSTRUG00000003783	sfpq	59	54.692

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000011335	pspc1	77	65.937	ENSG00000121390	PSPC1	92	65.668	Homo_sapiens
ENSTRUG00000011335	pspc1	100	73.996	ENSAPOG00000015946	pspc1	100	75.143	Acanthochromis_polyacanthus
ENSTRUG00000011335	pspc1	77	66.180	ENSAMEG00000017420	PSPC1	95	60.117	Ailuropoda_melanoleuca
ENSTRUG00000011335	pspc1	100	67.245	ENSACIG00000018695	pspc1	100	65.835	Amphilophus_citrinellus
ENSTRUG00000011335	pspc1	100	73.905	ENSAOCG00000005279	pspc1	100	74.857	Amphiprion_ocellaris
ENSTRUG00000011335	pspc1	100	74.521	ENSAPEG00000015927	pspc1	100	75.479	Amphiprion_percula
ENSTRUG00000011335	pspc1	100	64.259	ENSATEG00000004878	pspc1	100	62.928	Anabas_testudineus
ENSTRUG00000011335	pspc1	76	62.347	ENSAPLG00000006246	PSPC1	100	62.802	Anas_platyrhynchos
ENSTRUG00000011335	pspc1	67	58.543	ENSAPLG00000003643	SFPQ	82	53.778	Anas_platyrhynchos
ENSTRUG00000011335	pspc1	87	61.702	ENSACAG00000002093	PSPC1	88	62.766	Anolis_carolinensis
ENSTRUG00000011335	pspc1	67	54.622	ENSACAG00000013307	-	66	51.111	Anolis_carolinensis
ENSTRUG00000011335	pspc1	77	65.937	ENSANAG00000000059	PSPC1	83	70.062	Aotus_nancymaae
ENSTRUG00000011335	pspc1	100	68.544	ENSACLG00000027220	pspc1	100	67.823	Astatotilapia_calliptera
ENSTRUG00000011335	pspc1	100	58.303	ENSAMXG00000036881	pspc1	100	61.152	Astyanax_mexicanus
ENSTRUG00000011335	pspc1	87	62.017	ENSBTAG00000003934	PSPC1	89	62.845	Bos_taurus
ENSTRUG00000011335	pspc1	77	65.937	ENSCJAG00000004554	PSPC1	88	63.270	Callithrix_jacchus
ENSTRUG00000011335	pspc1	77	66.180	ENSCAFG00020002009	PSPC1	83	71.077	Canis_lupus_dingo
ENSTRUG00000011335	pspc1	87	62.017	ENSCHIG00000016708	PSPC1	89	62.845	Capra_hircus
ENSTRUG00000011335	pspc1	75	56.311	ENSTSYG00000032882	PSPC1	88	53.589	Carlito_syrichta
ENSTRUG00000011335	pspc1	77	65.937	ENSCPOG00000000395	PSPC1	83	71.296	Cavia_porcellus
ENSTRUG00000011335	pspc1	77	65.937	ENSCCAG00000033498	PSPC1	88	63.270	Cebus_capucinus
ENSTRUG00000011335	pspc1	77	66.180	ENSCATG00000036434	PSPC1	90	71.296	Cercocebus_atys
ENSTRUG00000011335	pspc1	67	64.820	ENSCLAG00000005241	PSPC1	92	61.995	Chinchilla_lanigera
ENSTRUG00000011335	pspc1	77	61.369	ENSCHOG00000008913	PSPC1	88	59.574	Choloepus_hoffmanni
ENSTRUG00000011335	pspc1	88	62.473	ENSCPBG00000020859	PSPC1	89	62.869	Chrysemys_picta_bellii
ENSTRUG00000011335	pspc1	56	55.903	ENSCSAVG00000003533	-	52	57.091	Ciona_savignyi
ENSTRUG00000011335	pspc1	51	72.901	ENSCANG00000018948	PSPC1	87	72.901	Colobus_angolensis_palliatus
ENSTRUG00000011335	pspc1	77	66.180	ENSCGRG00001018368	Pspc1	88	63.057	Cricetulus_griseus_chok1gshd
ENSTRUG00000011335	pspc1	77	66.180	ENSCGRG00000011724	Pspc1	88	63.057	Cricetulus_griseus_crigri
ENSTRUG00000011335	pspc1	100	68.533	ENSCVAG00000007679	-	100	69.112	Cyprinodon_variegatus
ENSTRUG00000011335	pspc1	96	63.960	ENSDARG00000006621	pspc1	100	64.691	Danio_rerio
ENSTRUG00000011335	pspc1	87	62.232	ENSDNOG00000011078	PSPC1	88	63.482	Dasypus_novemcinctus
ENSTRUG00000011335	pspc1	79	62.796	ENSDORG00000016050	Pspc1	90	60.373	Dipodomys_ordii
ENSTRUG00000011335	pspc1	82	54.608	ENSEBUG00000003964	-	76	55.819	Eptatretus_burgeri
ENSTRUG00000011335	pspc1	58	41.667	ENSEBUG00000010133	pspc1	76	43.686	Eptatretus_burgeri
ENSTRUG00000011335	pspc1	90	61.587	ENSEASG00005000119	PSPC1	92	66.216	Equus_asinus_asinus
ENSTRUG00000011335	pspc1	90	61.587	ENSECAG00000017286	PSPC1	92	66.216	Equus_caballus
ENSTRUG00000011335	pspc1	51	62.214	ENSEEUG00000011288	-	51	62.214	Erinaceus_europaeus
ENSTRUG00000011335	pspc1	100	60.517	ENSELUG00000003746	pspc1	100	61.624	Esox_lucius
ENSTRUG00000011335	pspc1	77	66.180	ENSFCAG00000027841	PSPC1	83	71.077	Felis_catus
ENSTRUG00000011335	pspc1	91	61.983	ENSFALG00000008750	PSPC1	90	62.372	Ficedula_albicollis
ENSTRUG00000011335	pspc1	93	60.649	ENSFDAG00000002617	PSPC1	95	61.446	Fukomys_damarensis
ENSTRUG00000011335	pspc1	100	57.034	ENSGMOG00000015074	pspc1	100	57.985	Gadus_morhua
ENSTRUG00000011335	pspc1	87	62.955	ENSGALG00000017142	PSPC1	88	63.347	Gallus_gallus
ENSTRUG00000011335	pspc1	75	70.408	ENSGAFG00000006327	pspc1	81	71.173	Gambusia_affinis
ENSTRUG00000011335	pspc1	100	68.208	ENSGACG00000014901	pspc1	99	75.493	Gasterosteus_aculeatus
ENSTRUG00000011335	pspc1	88	62.473	ENSGAGG00000019164	PSPC1	89	62.869	Gopherus_agassizii
ENSTRUG00000011335	pspc1	86	51.974	ENSGAGG00000017325	-	66	53.524	Gopherus_agassizii
ENSTRUG00000011335	pspc1	77	65.937	ENSGGOG00000003414	PSPC1	92	65.668	Gorilla_gorilla
ENSTRUG00000011335	pspc1	100	74.855	ENSHBUG00000001139	pspc1	100	76.596	Haplochromis_burtoni
ENSTRUG00000011335	pspc1	77	66.180	ENSHGLG00000018811	PSPC1	89	63.270	Heterocephalus_glaber_female
ENSTRUG00000011335	pspc1	61	68.051	ENSHGLG00100007962	PSPC1	95	68.489	Heterocephalus_glaber_male
ENSTRUG00000011335	pspc1	80	73.735	ENSHCOG00000013251	pspc1	99	68.667	Hippocampus_comes
ENSTRUG00000011335	pspc1	100	59.191	ENSIPUG00000013192	pspc1	100	62.524	Ictalurus_punctatus
ENSTRUG00000011335	pspc1	77	66.019	ENSSTOG00000026833	PSPC1	82	71.296	Ictidomys_tridecemlineatus
ENSTRUG00000011335	pspc1	77	65.617	ENSJJAG00000018334	Pspc1	89	62.791	Jaculus_jaculus
ENSTRUG00000011335	pspc1	100	58.317	ENSKMAG00000013525	-	98	67.188	Kryptolebias_marmoratus
ENSTRUG00000011335	pspc1	98	69.886	ENSLBEG00000004474	pspc1	99	70.076	Labrus_bergylta
ENSTRUG00000011335	pspc1	80	63.953	ENSLACG00000010762	PSPC1	88	63.347	Latimeria_chalumnae
ENSTRUG00000011335	pspc1	82	69.037	ENSLOCG00000010832	pspc1	99	64.844	Lepisosteus_oculatus
ENSTRUG00000011335	pspc1	77	66.180	ENSLAFG00000010968	PSPC1	88	63.270	Loxodonta_africana
ENSTRUG00000011335	pspc1	77	66.180	ENSMFAG00000032728	PSPC1	91	71.077	Macaca_fascicularis
ENSTRUG00000011335	pspc1	77	66.180	ENSMMUG00000020262	PSPC1	88	71.296	Macaca_mulatta
ENSTRUG00000011335	pspc1	77	66.180	ENSMNEG00000027401	PSPC1	93	63.004	Macaca_nemestrina
ENSTRUG00000011335	pspc1	65	66.476	ENSMLEG00000039043	PSPC1	94	63.325	Mandrillus_leucophaeus
ENSTRUG00000011335	pspc1	100	72.693	ENSMAMG00000004333	pspc1	100	73.446	Mastacembelus_armatus
ENSTRUG00000011335	pspc1	100	68.544	ENSMZEG00005005726	pspc1	100	67.823	Maylandia_zebra
ENSTRUG00000011335	pspc1	77	62.287	ENSMGAG00000015134	PSPC1	100	62.740	Meleagris_gallopavo
ENSTRUG00000011335	pspc1	75	62.531	ENSMAUG00000021067	Pspc1	86	60.494	Mesocricetus_auratus
ENSTRUG00000011335	pspc1	87	63.270	ENSMICG00000013970	PSPC1	83	71.296	Microcebus_murinus
ENSTRUG00000011335	pspc1	77	66.180	ENSMOCG00000006060	Pspc1	88	63.270	Microtus_ochrogaster
ENSTRUG00000011335	pspc1	81	85.185	ENSMMOG00000004352	pspc1	71	82.143	Mola_mola
ENSTRUG00000011335	pspc1	77	66.180	ENSMODG00000008029	PSPC1	66	66.423	Monodelphis_domestica
ENSTRUG00000011335	pspc1	100	72.093	ENSMALG00000008914	pspc1	100	72.481	Monopterus_albus
ENSTRUG00000011335	pspc1	77	66.019	MGP_CAROLIEiJ_G0019341	Pspc1	94	62.416	Mus_caroli
ENSTRUG00000011335	pspc1	77	66.019	ENSMUSG00000021938	Pspc1	94	62.416	Mus_musculus
ENSTRUG00000011335	pspc1	87	62.099	MGP_PahariEiJ_G0030359	Pspc1	94	62.416	Mus_pahari
ENSTRUG00000011335	pspc1	77	66.019	MGP_SPRETEiJ_G0020232	Pspc1	94	62.416	Mus_spretus
ENSTRUG00000011335	pspc1	77	66.180	ENSMPUG00000013347	PSPC1	88	63.270	Mustela_putorius_furo
ENSTRUG00000011335	pspc1	88	61.783	ENSMLUG00000017663	PSPC1	90	62.268	Myotis_lucifugus
ENSTRUG00000011335	pspc1	87	62.420	ENSNGAG00000011271	Pspc1	88	63.057	Nannospalax_galili
ENSTRUG00000011335	pspc1	75	71.649	ENSNBRG00000014059	pspc1	92	71.134	Neolamprologus_brichardi
ENSTRUG00000011335	pspc1	77	65.937	ENSNLEG00000001294	PSPC1	95	59.922	Nomascus_leucogenys
ENSTRUG00000011335	pspc1	74	50.390	ENSMEUG00000000476	PSPC1	95	45.029	Notamacropus_eugenii
ENSTRUG00000011335	pspc1	87	54.545	ENSODEG00000007817	-	95	51.056	Octodon_degus
ENSTRUG00000011335	pspc1	87	58.635	ENSODEG00000019012	-	95	56.641	Octodon_degus
ENSTRUG00000011335	pspc1	100	75.676	ENSONIG00000012010	pspc1	99	77.606	Oreochromis_niloticus
ENSTRUG00000011335	pspc1	77	51.106	ENSOANG00000011381	-	92	49.676	Ornithorhynchus_anatinus
ENSTRUG00000011335	pspc1	75	61.369	ENSOANG00000009017	-	100	63.081	Ornithorhynchus_anatinus
ENSTRUG00000011335	pspc1	77	66.019	ENSOCUG00000006153	PSPC1	88	62.766	Oryctolagus_cuniculus
ENSTRUG00000011335	pspc1	100	68.919	ENSORLG00000004232	-	100	69.632	Oryzias_latipes
ENSTRUG00000011335	pspc1	100	69.439	ENSORLG00020000578	PSPC1	100	67.823	Oryzias_latipes_hni
ENSTRUG00000011335	pspc1	100	69.112	ENSORLG00015017480	pspc1	100	68.015	Oryzias_latipes_hsok
ENSTRUG00000011335	pspc1	77	66.180	ENSOGAG00000012643	PSPC1	88	63.270	Otolemur_garnettii
ENSTRUG00000011335	pspc1	89	60.669	ENSOARG00000014163	PSPC1	98	61.491	Ovis_aries
ENSTRUG00000011335	pspc1	77	59.756	ENSPPAG00000009836	PSPC1	92	71.296	Pan_paniscus
ENSTRUG00000011335	pspc1	77	66.180	ENSPPRG00000008833	PSPC1	88	63.270	Panthera_pardus
ENSTRUG00000011335	pspc1	65	66.189	ENSPTIG00000016917	PSPC1	84	62.836	Panthera_tigris_altaica
ENSTRUG00000011335	pspc1	77	65.937	ENSPTRG00000005677	PSPC1	92	65.668	Pan_troglodytes
ENSTRUG00000011335	pspc1	77	66.180	ENSPANG00000001992	PSPC1	89	71.077	Papio_anubis
ENSTRUG00000011335	pspc1	86	66.222	ENSPKIG00000003578	pspc1	98	63.107	Paramormyrops_kingsleyae
ENSTRUG00000011335	pspc1	88	62.047	ENSPSIG00000005168	PSPC1	88	62.236	Pelodiscus_sinensis
ENSTRUG00000011335	pspc1	69	68.524	ENSPMGG00000015135	pspc1	98	68.258	Periophthalmus_magnuspinnatus
ENSTRUG00000011335	pspc1	77	66.180	ENSPEMG00000015214	Pspc1	88	63.270	Peromyscus_maniculatus_bairdii
ENSTRUG00000011335	pspc1	52	41.091	ENSPMAG00000004618	pspc1	84	41.091	Petromyzon_marinus
ENSTRUG00000011335	pspc1	77	66.180	ENSPCIG00000017680	PSPC1	88	63.270	Phascolarctos_cinereus
ENSTRUG00000011335	pspc1	99	70.155	ENSPFOG00000003362	pspc1	99	70.736	Poecilia_formosa
ENSTRUG00000011335	pspc1	100	70.115	ENSPLAG00000011540	pspc1	100	70.690	Poecilia_latipinna
ENSTRUG00000011335	pspc1	75	51.508	ENSPLAG00000004407	-	65	44.353	Poecilia_latipinna
ENSTRUG00000011335	pspc1	79	50.238	ENSPMEG00000001025	-	55	50.355	Poecilia_mexicana
ENSTRUG00000011335	pspc1	100	69.732	ENSPMEG00000008322	pspc1	100	70.307	Poecilia_mexicana
ENSTRUG00000011335	pspc1	100	70.115	ENSPREG00000007786	pspc1	100	70.690	Poecilia_reticulata
ENSTRUG00000011335	pspc1	77	65.693	ENSPPYG00000005186	PSPC1	95	60.311	Pongo_abelii
ENSTRUG00000011335	pspc1	87	59.873	ENSPCOG00000014364	PSPC1	88	60.394	Propithecus_coquereli
ENSTRUG00000011335	pspc1	87	61.359	ENSPVAG00000005036	PSPC1	89	62.420	Pteropus_vampyrus
ENSTRUG00000011335	pspc1	100	68.544	ENSPNYG00000008893	pspc1	100	67.823	Pundamilia_nyererei
ENSTRUG00000011335	pspc1	88	64.361	ENSPNAG00000016511	pspc1	100	62.664	Pygocentrus_nattereri
ENSTRUG00000011335	pspc1	77	66.180	ENSRNOG00000020782	Pspc1	86	66.998	Rattus_norvegicus
ENSTRUG00000011335	pspc1	82	63.326	ENSRBIG00000036057	PSPC1	98	66.760	Rhinopithecus_bieti
ENSTRUG00000011335	pspc1	77	65.937	ENSRROG00000036334	PSPC1	93	65.147	Rhinopithecus_roxellana
ENSTRUG00000011335	pspc1	68	57.459	ENSSBOG00000028172	PSPC1	88	71.642	Saimiri_boliviensis_boliviensis
ENSTRUG00000011335	pspc1	77	60.671	ENSSHAG00000004696	PSPC1	88	56.701	Sarcophilus_harrisii
ENSTRUG00000011335	pspc1	88	64.066	ENSSFOG00015001395	pspc1	100	68.499	Scleropages_formosus
ENSTRUG00000011335	pspc1	100	71.132	ENSSMAG00000001761	pspc1	100	71.321	Scophthalmus_maximus
ENSTRUG00000011335	pspc1	100	70.425	ENSSDUG00000010651	pspc1	100	71.009	Seriola_dumerili
ENSTRUG00000011335	pspc1	100	64.341	ENSSLDG00000004284	pspc1	100	64.190	Seriola_lalandi_dorsalis
ENSTRUG00000011335	pspc1	77	60.680	ENSSARG00000000888	PSPC1	89	58.849	Sorex_araneus
ENSTRUG00000011335	pspc1	87	53.433	ENSSPUG00000008550	PSPC1	88	54.644	Sphenodon_punctatus
ENSTRUG00000011335	pspc1	86	46.930	ENSSPUG00000001136	-	64	47.826	Sphenodon_punctatus
ENSTRUG00000011335	pspc1	100	73.258	ENSSPAG00000001921	pspc1	100	73.635	Stegastes_partitus
ENSTRUG00000011335	pspc1	77	65.937	ENSSSCG00000009569	PSPC1	84	70.988	Sus_scrofa
ENSTRUG00000011335	pspc1	88	62.900	ENSTGUG00000011295	PSPC1	99	63.291	Taeniopygia_guttata
ENSTRUG00000011335	pspc1	100	82.946	ENSTNIG00000010358	pspc1	100	84.496	Tetraodon_nigroviridis
ENSTRUG00000011335	pspc1	87	54.664	ENSTBEG00000002361	PSPC1	88	54.428	Tupaia_belangeri
ENSTRUG00000011335	pspc1	77	65.937	ENSTTRG00000003343	PSPC1	89	63.057	Tursiops_truncatus
ENSTRUG00000011335	pspc1	56	71.972	ENSUAMG00000012309	PSPC1	92	66.261	Ursus_americanus
ENSTRUG00000011335	pspc1	82	63.326	ENSUMAG00000013993	PSPC1	91	70.769	Ursus_maritimus
ENSTRUG00000011335	pspc1	75	61.634	ENSVPAG00000010029	PSPC1	100	63.081	Vicugna_pacos
ENSTRUG00000011335	pspc1	77	66.180	ENSVVUG00000006414	PSPC1	84	71.296	Vulpes_vulpes
ENSTRUG00000011335	pspc1	75	70.918	ENSXCOG00000017438	pspc1	93	71.684	Xiphophorus_couchianus
ENSTRUG00000011335	pspc1	75	70.918	ENSXMAG00000007929	pspc1	93	71.684	Xiphophorus_maculatus