EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSTRUG00000011577 (Gene tree)
Gene ID
101075227
Gene Symbol
-
Alias
-
Full Name
poly(A) binding protein cytoplasmic 1
Gene Type
protein_coding
Species
Takifugu_rubripes
Status
putative
Strand
Plus strand
Length
4904 bases
Position
chr7:5020021-5024924
Accession
101075227
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSTRUP00000029262PABPPF00658.187.6e-3111
ENSTRUP00000029262RRM_5PF13893.63.9e-0811
ENSTRUP00000029262RRM_1PF00076.227.4e-9314
ENSTRUP00000029262RRM_1PF00076.227.4e-9324
ENSTRUP00000029262RRM_1PF00076.227.4e-9334
ENSTRUP00000029262RRM_1PF00076.227.4e-9344
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSTRUT00000029379-3155XM_003965840ENSTRUP00000029262636 (aa)XP_003965889H2TX53
Gene Model
Click here to download ENSTRUG00000011577's gene model file
Pathways
Pathway IDPathway NameSource
tru03013RNA transportKEGG
tru03015mRNA surveillance pathwayKEGG
tru03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000011577's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSTRUG00000011577-5339.759ENSTRUG00000017937celf5a6839.759
ENSTRUG00000011577-5534.884ENSTRUG00000010147-5734.884
ENSTRUG00000011577-9668.831ENSTRUG00000011085pabpc1l9768.871
ENSTRUG00000011577-6831.183ENSTRUG00000015136-8431.183
ENSTRUG00000011577-10085.759ENSTRUG00000003767-10085.759
ENSTRUG00000011577-5640.278ENSTRUG00000021378-6440.278
ENSTRUG00000011577-5730.741ENSTRUG00000020927TIAL17130.741
ENSTRUG00000011577-9974.603ENSTRUG00000005907pabpc49875.079
ENSTRUG00000011577-5836.145ENSTRUG00000000523elavl48736.145
ENSTRUG00000011577-5734.737ENSTRUG00000007296-9335.088
ENSTRUG00000011577-5837.333ENSTRUG00000016032rbm197037.333
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSTRUG00000011577-5880.102ENSG00000186288PABPC1L2A9880.102Homo_sapiens
ENSTRUG00000011577-5880.102ENSG00000184388PABPC1L2B9880.102Homo_sapiens
ENSTRUG00000011577-10095.440ENSAPOG00000015105pabpc1a10094.969Acanthochromis_polyacanthus
ENSTRUG00000011577-10090.282ENSAPOG00000017776pabpc1b10090.282Acanthochromis_polyacanthus
ENSTRUG00000011577-5880.102ENSAMEG00000019441-9880.102Ailuropoda_melanoleuca
ENSTRUG00000011577-10095.440ENSACIG00000004685pabpc1a10095.283Amphilophus_citrinellus
ENSTRUG00000011577-10084.938ENSACIG00000018366pabpc1b10084.938Amphilophus_citrinellus
ENSTRUG00000011577-10090.125ENSAOCG00000019839pabpc1b10090.125Amphiprion_ocellaris
ENSTRUG00000011577-10095.912ENSAOCG00000011656pabpc1a10095.440Amphiprion_ocellaris
ENSTRUG00000011577-10090.125ENSAPEG00000010435pabpc1b10090.125Amphiprion_percula
ENSTRUG00000011577-10095.912ENSAPEG00000006963pabpc1a10095.440Amphiprion_percula
ENSTRUG00000011577-10095.126ENSATEG00000024852pabpc1a10094.654Anabas_testudineus
ENSTRUG00000011577-10089.045ENSATEG00000012917pabpc1b10089.045Anabas_testudineus
ENSTRUG00000011577-5880.102ENSANAG00000019431-9880.102Aotus_nancymaae
ENSTRUG00000011577-5880.102ENSANAG00000019429-9880.102Aotus_nancymaae
ENSTRUG00000011577-10095.440ENSACLG00000009399pabpc1a10095.413Astatotilapia_calliptera
ENSTRUG00000011577-10088.401ENSACLG00000014335pabpc1b10088.401Astatotilapia_calliptera
ENSTRUG00000011577-10089.812ENSAMXG00000008599pabpc1b10089.812Astyanax_mexicanus
ENSTRUG00000011577-5977.033ENSBTAG00000052491-9877.033Bos_taurus
ENSTRUG00000011577-5979.024ENSBTAG00000050902-9879.024Bos_taurus
ENSTRUG00000011577-5880.102ENSCJAG00000041326-9880.102Callithrix_jacchus
ENSTRUG00000011577-5979.024ENSCAFG00020002052-9879.024Canis_lupus_dingo
ENSTRUG00000011577-5880.102ENSCHIG00000006283-9880.102Capra_hircus
ENSTRUG00000011577-5880.102ENSCHIG00000011138-9880.102Capra_hircus
ENSTRUG00000011577-5880.102ENSTSYG00000001775-9880.102Carlito_syrichta
ENSTRUG00000011577-5880.102ENSCPOG00000009525-9880.102Cavia_porcellus
ENSTRUG00000011577-5880.102ENSCCAG00000031524-9880.102Cebus_capucinus
ENSTRUG00000011577-5880.102ENSCATG00000043125-9880.102Cercocebus_atys
ENSTRUG00000011577-5880.102ENSCATG00000042826-9880.102Cercocebus_atys
ENSTRUG00000011577-5878.061ENSCLAG00000017409-9878.061Chinchilla_lanigera
ENSTRUG00000011577-5878.061ENSCLAG00000017412-9878.061Chinchilla_lanigera
ENSTRUG00000011577-5880.102ENSCSAG00000000102-9880.102Chlorocebus_sabaeus
ENSTRUG00000011577-5780.110ENSCGRG00001023387-9677.436Cricetulus_griseus_chok1gshd
ENSTRUG00000011577-9994.945ENSCSEG00000013324pabpc1a10094.471Cynoglossus_semilaevis
ENSTRUG00000011577-10088.088ENSCSEG00000015241-10088.088Cynoglossus_semilaevis
ENSTRUG00000011577-10095.440ENSCVAG00000021872pabpc1a10094.654Cyprinodon_variegatus
ENSTRUG00000011577-10087.167ENSCVAG00000005489pabpc1b10087.167Cyprinodon_variegatus
ENSTRUG00000011577-10088.245ENSDARG00000021140pabpc1b9992.199Danio_rerio
ENSTRUG00000011577-10089.969ENSDARG00000017219pabpc1a10090.282Danio_rerio
ENSTRUG00000011577-5880.423ENSDNOG00000030926-9878.571Dasypus_novemcinctus
ENSTRUG00000011577-5877.551ENSDORG00000011362-9877.551Dipodomys_ordii
ENSTRUG00000011577-5978.641ENSEASG00005010399-9878.641Equus_asinus_asinus
ENSTRUG00000011577-5978.641ENSECAG00000002620-9878.641Equus_caballus
ENSTRUG00000011577-5976.020ENSEEUG00000008203-9876.020Erinaceus_europaeus
ENSTRUG00000011577-9992.622ENSELUG00000003614pabpc1a10092.151Esox_lucius
ENSTRUG00000011577-10088.125ENSELUG00000015062-10088.125Esox_lucius
ENSTRUG00000011577-5958.621ENSELUG00000005389-9758.621Esox_lucius
ENSTRUG00000011577-5880.102ENSFCAG00000039701-9880.102Felis_catus
ENSTRUG00000011577-5880.102ENSFDAG00000005484-9880.102Fukomys_damarensis
ENSTRUG00000011577-10089.028ENSFHEG00000008186pabpc1b10089.028Fundulus_heteroclitus
ENSTRUG00000011577-10095.126ENSFHEG00000018979pabpc1a10094.654Fundulus_heteroclitus
ENSTRUG00000011577-10080.310ENSGMOG00000002448-10080.310Gadus_morhua
ENSTRUG00000011577-9993.509ENSGMOG00000013448pabpc1a9993.509Gadus_morhua
ENSTRUG00000011577-10095.126ENSGAFG00000019750pabpc1a10095.126Gambusia_affinis
ENSTRUG00000011577-10089.498ENSGAFG00000010193pabpc1b10089.498Gambusia_affinis
ENSTRUG00000011577-10095.912ENSGACG00000003572pabpc1a10095.283Gasterosteus_aculeatus
ENSTRUG00000011577-10085.780ENSGACG00000003771pabpc1b10087.461Gasterosteus_aculeatus
ENSTRUG00000011577-5880.102ENSGGOG00000043933-9880.102Gorilla_gorilla
ENSTRUG00000011577-5880.102ENSGGOG00000038606-9880.102Gorilla_gorilla
ENSTRUG00000011577-10095.440ENSHBUG00000020487pabpc1a10095.413Haplochromis_burtoni
ENSTRUG00000011577-10088.401ENSHBUG00000002075pabpc1b10088.401Haplochromis_burtoni
ENSTRUG00000011577-5879.082ENSHGLG00000019762-9879.082Heterocephalus_glaber_female
ENSTRUG00000011577-5879.082ENSHGLG00000019668-9879.082Heterocephalus_glaber_female
ENSTRUG00000011577-5879.082ENSHGLG00100020854-9879.082Heterocephalus_glaber_male
ENSTRUG00000011577-9868.850ENSHCOG00000003175pabpc1b9968.167Hippocampus_comes
ENSTRUG00000011577-10094.811ENSHCOG00000013502pabpc1a10094.340Hippocampus_comes
ENSTRUG00000011577-10089.465ENSIPUG00000008848pabpc1a10089.465Ictalurus_punctatus
ENSTRUG00000011577-10084.326ENSIPUG00000010791-10084.326Ictalurus_punctatus
ENSTRUG00000011577-7057.883ENSIPUG00000021244-6057.883Ictalurus_punctatus
ENSTRUG00000011577-7458.209ENSIPUG00000018724-7658.209Ictalurus_punctatus
ENSTRUG00000011577-5879.592ENSSTOG00000026028-9879.592Ictidomys_tridecemlineatus
ENSTRUG00000011577-5879.592ENSSTOG00000022096-9879.592Ictidomys_tridecemlineatus
ENSTRUG00000011577-5878.571ENSJJAG00000007037-9878.571Jaculus_jaculus
ENSTRUG00000011577-10095.755ENSKMAG00000000605pabpc1a10094.969Kryptolebias_marmoratus
ENSTRUG00000011577-10088.226ENSKMAG00000008049pabpc1b10088.226Kryptolebias_marmoratus
ENSTRUG00000011577-10089.185ENSLBEG00000026845pabpc1b10089.185Labrus_bergylta
ENSTRUG00000011577-10095.755ENSLBEG00000024002-10095.283Labrus_bergylta
ENSTRUG00000011577-5878.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSTRUG00000011577-5879.695ENSMFAG00000028878-9879.695Macaca_fascicularis
ENSTRUG00000011577-5880.102ENSMMUG00000039929-9880.102Macaca_mulatta
ENSTRUG00000011577-5880.102ENSMMUG00000009740-9880.102Macaca_mulatta
ENSTRUG00000011577-5880.102ENSMMUG00000037681-9880.102Macaca_mulatta
ENSTRUG00000011577-5880.102ENSMNEG00000037732-9880.102Macaca_nemestrina
ENSTRUG00000011577-5880.102ENSMLEG00000027495-9880.102Mandrillus_leucophaeus
ENSTRUG00000011577-10095.126ENSMAMG00000004502-10094.954Mastacembelus_armatus
ENSTRUG00000011577-10089.655ENSMAMG00000014610pabpc1b10089.655Mastacembelus_armatus
ENSTRUG00000011577-10088.401ENSMZEG00005026745pabpc1b10088.401Maylandia_zebra
ENSTRUG00000011577-10095.440ENSMZEG00005025416pabpc1a10095.413Maylandia_zebra
ENSTRUG00000011577-5880.102ENSMICG00000047642-9880.102Microcebus_murinus
ENSTRUG00000011577-10083.856ENSMMOG00000018009pabpc1b10083.699Mola_mola
ENSTRUG00000011577-10094.072ENSMMOG00000018044pabpc1a10094.954Mola_mola
ENSTRUG00000011577-9965.728ENSMODG00000015024-9965.728Monodelphis_domestica
ENSTRUG00000011577-9872.089ENSMODG00000013156-9872.568Monodelphis_domestica
ENSTRUG00000011577-10094.654ENSMALG00000013020-10094.497Monopterus_albus
ENSTRUG00000011577-10082.915ENSMALG00000006066pabpc1b10084.483Monopterus_albus
ENSTRUG00000011577-5881.967ENSNGAG00000012688-9878.571Nannospalax_galili
ENSTRUG00000011577-10095.283ENSNBRG00000003068-10095.413Neolamprologus_brichardi
ENSTRUG00000011577-10088.401ENSNBRG00000013737pabpc1b10088.401Neolamprologus_brichardi
ENSTRUG00000011577-5880.102ENSNLEG00000018128-9880.102Nomascus_leucogenys
ENSTRUG00000011577-5879.592ENSODEG00000018540-9879.592Octodon_degus
ENSTRUG00000011577-10088.401ENSONIG00000002717pabpc1b10088.401Oreochromis_niloticus
ENSTRUG00000011577-10094.497ENSONIG00000006871-10094.340Oreochromis_niloticus
ENSTRUG00000011577-5880.102ENSOCUG00000002565-9880.102Oryctolagus_cuniculus
ENSTRUG00000011577-10083.699ENSORLG00000003008-10083.229Oryzias_latipes
ENSTRUG00000011577-10094.654ENSORLG00000002691pabpc1a9698.571Oryzias_latipes
ENSTRUG00000011577-10094.811ENSORLG00020022398pabpc1a10094.497Oryzias_latipes_hni
ENSTRUG00000011577-10083.699ENSORLG00020022259-10083.229Oryzias_latipes_hni
ENSTRUG00000011577-10084.013ENSORLG00015010932-10083.542Oryzias_latipes_hsok
ENSTRUG00000011577-10094.654ENSORLG00015013633pabpc110094.340Oryzias_latipes_hsok
ENSTRUG00000011577-10094.969ENSOMEG00000020219pabpc1a10094.654Oryzias_melastigma
ENSTRUG00000011577-9981.693ENSOMEG00000013627pabpc1b10081.693Oryzias_melastigma
ENSTRUG00000011577-5880.102ENSOGAG00000029513-9880.102Otolemur_garnettii
ENSTRUG00000011577-5880.102ENSOGAG00000026047-9880.102Otolemur_garnettii
ENSTRUG00000011577-5880.102ENSOARG00000005943-9880.102Ovis_aries
ENSTRUG00000011577-5880.102ENSPPAG00000012920-9880.102Pan_paniscus
ENSTRUG00000011577-5880.102ENSPPRG00000011804-9880.102Panthera_pardus
ENSTRUG00000011577-5880.102ENSPPRG00000011809-9880.102Panthera_pardus
ENSTRUG00000011577-5880.102ENSPTRG00000028252-9880.102Pan_troglodytes
ENSTRUG00000011577-5880.102ENSPANG00000011549-9880.102Papio_anubis
ENSTRUG00000011577-10090.282ENSPKIG00000005676pabpc1b10090.282Paramormyrops_kingsleyae
ENSTRUG00000011577-7097.753ENSPMGG00000022487pabpc1a9297.753Periophthalmus_magnuspinnatus
ENSTRUG00000011577-7091.704ENSPMGG00000023134-9791.704Periophthalmus_magnuspinnatus
ENSTRUG00000011577-9970.840ENSPCIG00000016995-5570.681Phascolarctos_cinereus
ENSTRUG00000011577-10093.827ENSPFOG00000010815pabpc1a10093.364Poecilia_formosa
ENSTRUG00000011577-10089.028ENSPFOG00000005917pabpc1b10089.028Poecilia_formosa
ENSTRUG00000011577-10089.342ENSPLAG00000001388pabpc1b10089.342Poecilia_latipinna
ENSTRUG00000011577-10095.755ENSPLAG00000004114pabpc1a10095.283Poecilia_latipinna
ENSTRUG00000011577-10095.755ENSPMEG00000001334pabpc1a10095.283Poecilia_mexicana
ENSTRUG00000011577-10089.028ENSPMEG00000014399pabpc1b10089.028Poecilia_mexicana
ENSTRUG00000011577-10089.342ENSPREG00000010911pabpc1b10089.342Poecilia_reticulata
ENSTRUG00000011577-9995.413ENSPREG00000019595pabpc1a10095.413Poecilia_reticulata
ENSTRUG00000011577-5880.102ENSPPYG00000020468-9880.102Pongo_abelii
ENSTRUG00000011577-5980.102ENSPCAG00000005308-9880.102Procavia_capensis
ENSTRUG00000011577-5879.592ENSPCOG00000026349-9879.592Propithecus_coquereli
ENSTRUG00000011577-5980.513ENSPVAG00000016117-9880.513Pteropus_vampyrus
ENSTRUG00000011577-10095.440ENSPNYG00000005192pabpc1a10095.283Pundamilia_nyererei
ENSTRUG00000011577-10088.401ENSPNYG00000012578pabpc1b10088.401Pundamilia_nyererei
ENSTRUG00000011577-10090.424ENSPNAG00000028408pabpc1a9595.506Pygocentrus_nattereri
ENSTRUG00000011577-10089.655ENSPNAG00000024626pabpc1b10089.655Pygocentrus_nattereri
ENSTRUG00000011577-9189.437ENSRBIG00000028738-9589.437Rhinopithecus_bieti
ENSTRUG00000011577-5880.102ENSRBIG00000027173-9880.102Rhinopithecus_bieti
ENSTRUG00000011577-5880.102ENSRROG00000017404-9880.102Rhinopithecus_roxellana
ENSTRUG00000011577-9864.480ENSSHAG00000000511-10064.537Sarcophilus_harrisii
ENSTRUG00000011577-10089.325ENSSFOG00015002752-10089.325Scleropages_formosus
ENSTRUG00000011577-6678.613ENSSFOG00015019668-8678.613Scleropages_formosus
ENSTRUG00000011577-10088.697ENSSFOG00015006662pabpc1a10088.697Scleropages_formosus
ENSTRUG00000011577-10088.871ENSSMAG00000006869pabpc1b10088.871Scophthalmus_maximus
ENSTRUG00000011577-10095.597ENSSMAG00000010803pabpc1a10095.126Scophthalmus_maximus
ENSTRUG00000011577-10095.126ENSSDUG00000006675pabpc1a10095.126Seriola_dumerili
ENSTRUG00000011577-10087.931ENSSDUG00000011965pabpc1b10087.931Seriola_dumerili
ENSTRUG00000011577-10095.126ENSSLDG00000011661pabpc1a10095.126Seriola_lalandi_dorsalis
ENSTRUG00000011577-10089.580ENSSLDG00000014156pabpc1b10089.580Seriola_lalandi_dorsalis
ENSTRUG00000011577-10095.440ENSSPAG00000014453-10094.969Stegastes_partitus
ENSTRUG00000011577-10090.125ENSSPAG00000019265pabpc1b10090.125Stegastes_partitus
ENSTRUG00000011577-5880.102ENSSSCG00000032167-9880.102Sus_scrofa
ENSTRUG00000011577-5880.102ENSSSCG00000036336-9880.102Sus_scrofa
ENSTRUG00000011577-10095.659ENSTNIG00000013307pabpc1a10095.659Tetraodon_nigroviridis
ENSTRUG00000011577-10086.293ENSTNIG00000009153pabpc1b10086.137Tetraodon_nigroviridis
ENSTRUG00000011577-5880.102ENSTTRG00000013181-9880.102Tursiops_truncatus
ENSTRUG00000011577-5880.102ENSUAMG00000008089-9880.102Ursus_americanus
ENSTRUG00000011577-5880.102ENSUMAG00000003364-9880.102Ursus_maritimus
ENSTRUG00000011577-9754.604ENSUMAG00000023926-8969.337Ursus_maritimus
ENSTRUG00000011577-5879.000ENSVVUG00000015892-9779.000Vulpes_vulpes
ENSTRUG00000011577-9745.349ENSXETG00000015439-9745.977Xenopus_tropicalis
ENSTRUG00000011577-10090.566ENSXCOG00000017066pabpc1a10090.094Xiphophorus_couchianus
ENSTRUG00000011577-10084.796ENSXCOG00000019901pabpc1b10084.953Xiphophorus_couchianus
ENSTRUG00000011577-10095.755ENSXMAG00000002555pabpc1a10095.283Xiphophorus_maculatus
ENSTRUG00000011577-10089.498ENSXMAG00000003753pabpc1b10089.498Xiphophorus_maculatus

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