EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000011654 (Gene tree)
Gene ID: 101079216
Gene Symbol: r3hdm1
Alias: WITHDRAWN: wu:fj35h04|fj35h04|fk85b04|id:ibd5043|sb:eu460|si:ch73-60i13.2|wu:fj35h04|wu:fk85b04
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 26978 bases
Position: chr8:3810308-3837285
Accession: 101079216
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000029450	R3H	PF01424.22	9.8e-13	1	1
ENSTRUP00000029451	R3H	PF01424.22	1.1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000029567	-	4521	-	ENSTRUP00000029450	977 (aa)	-	H2TXP1
ENSTRUT00000029568	-	4647	XM_011606169	ENSTRUP00000029451	1019 (aa)	XP_011604471	H2TXP2

Gene Model

Click here to download ENSTRUG00000011654's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000011654's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000011654	r3hdm1	62	74.820	ENSTRUG00000015075	r3hdm2	78	52.098

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000011654	r3hdm1	91	57.841	ENSG00000048991	R3HDM1	81	67.532	Homo_sapiens
ENSTRUG00000011654	r3hdm1	99	78.537	ENSAPOG00000020850	r3hdm1	96	78.634	Acanthochromis_polyacanthus
ENSTRUG00000011654	r3hdm1	93	46.926	ENSAMEG00000014886	R3HDM1	79	47.318	Ailuropoda_melanoleuca
ENSTRUG00000011654	r3hdm1	99	76.571	ENSAOCG00000005192	r3hdm1	100	76.060	Amphiprion_ocellaris
ENSTRUG00000011654	r3hdm1	99	78.405	ENSAPEG00000016108	r3hdm1	100	78.803	Amphiprion_percula
ENSTRUG00000011654	r3hdm1	99	78.341	ENSATEG00000000232	r3hdm1	100	78.634	Anabas_testudineus
ENSTRUG00000011654	r3hdm1	92	45.599	ENSAPLG00000015231	R3HDM1	78	46.467	Anas_platyrhynchos
ENSTRUG00000011654	r3hdm1	99	44.321	ENSACAG00000001676	R3HDM1	80	47.480	Anolis_carolinensis
ENSTRUG00000011654	r3hdm1	91	58.098	ENSANAG00000035334	R3HDM1	81	67.857	Aotus_nancymaae
ENSTRUG00000011654	r3hdm1	99	76.453	ENSACLG00000027282	r3hdm1	100	76.453	Astatotilapia_calliptera
ENSTRUG00000011654	r3hdm1	84	73.355	ENSAMXG00000012861	R3HDM1	78	72.368	Astyanax_mexicanus
ENSTRUG00000011654	r3hdm1	85	70.382	ENSAMXG00000003536	r3hdm1	77	71.382	Astyanax_mexicanus
ENSTRUG00000011654	r3hdm1	93	54.415	ENSBTAG00000013302	R3HDM1	88	44.985	Bos_taurus
ENSTRUG00000011654	r3hdm1	91	58.098	ENSCJAG00000011718	R3HDM1	81	67.857	Callithrix_jacchus
ENSTRUG00000011654	r3hdm1	93	46.926	ENSCAFG00000005075	R3HDM1	79	47.318	Canis_familiaris
ENSTRUG00000011654	r3hdm1	93	46.926	ENSCAFG00020016119	R3HDM1	79	59.556	Canis_lupus_dingo
ENSTRUG00000011654	r3hdm1	93	46.983	ENSCHIG00000020851	R3HDM1	79	47.747	Capra_hircus
ENSTRUG00000011654	r3hdm1	93	46.082	ENSCPOG00000012784	R3HDM1	84	59.564	Cavia_porcellus
ENSTRUG00000011654	r3hdm1	84	67.532	ENSCCAG00000027199	R3HDM1	81	67.532	Cebus_capucinus
ENSTRUG00000011654	r3hdm1	89	62.228	ENSCATG00000023642	R3HDM1	82	65.831	Cercocebus_atys
ENSTRUG00000011654	r3hdm1	94	46.432	ENSCLAG00000007962	R3HDM1	82	62.712	Chinchilla_lanigera
ENSTRUG00000011654	r3hdm1	93	46.392	ENSCSAG00000016356	R3HDM1	80	46.605	Chlorocebus_sabaeus
ENSTRUG00000011654	r3hdm1	78	66.667	ENSCHOG00000013638	R3HDM1	68	66.667	Choloepus_hoffmanni
ENSTRUG00000011654	r3hdm1	81	68.705	ENSCPBG00000009645	R3HDM1	86	68.705	Chrysemys_picta_bellii
ENSTRUG00000011654	r3hdm1	91	57.662	ENSCANG00000034748	R3HDM1	81	67.532	Colobus_angolensis_palliatus
ENSTRUG00000011654	r3hdm1	93	46.708	ENSCGRG00001012357	R3hdm1	77	46.619	Cricetulus_griseus_chok1gshd
ENSTRUG00000011654	r3hdm1	93	46.708	ENSCGRG00000012080	R3hdm1	89	59.778	Cricetulus_griseus_crigri
ENSTRUG00000011654	r3hdm1	99	65.403	ENSCSEG00000008944	r3hdm1	100	65.655	Cynoglossus_semilaevis
ENSTRUG00000011654	r3hdm1	99	71.848	ENSCVAG00000007582	r3hdm1	100	71.848	Cyprinodon_variegatus
ENSTRUG00000011654	r3hdm1	90	46.571	ENSDNOG00000000771	R3HDM1	76	46.799	Dasypus_novemcinctus
ENSTRUG00000011654	r3hdm1	70	61.250	ENSETEG00000013606	R3HDM1	71	52.863	Echinops_telfairi
ENSTRUG00000011654	r3hdm1	84	67.097	ENSEASG00005007392	R3HDM1	78	67.097	Equus_asinus_asinus
ENSTRUG00000011654	r3hdm1	84	67.097	ENSECAG00000019114	R3HDM1	78	67.097	Equus_caballus
ENSTRUG00000011654	r3hdm1	89	50.552	ENSELUG00000014413	r3hdm1	83	51.214	Esox_lucius
ENSTRUG00000011654	r3hdm1	94	48.594	ENSELUG00000004909	R3HDM1	82	49.000	Esox_lucius
ENSTRUG00000011654	r3hdm1	84	67.208	ENSFCAG00000027113	R3HDM1	78	67.208	Felis_catus
ENSTRUG00000011654	r3hdm1	77	47.342	ENSFALG00000013731	R3HDM1	81	42.512	Ficedula_albicollis
ENSTRUG00000011654	r3hdm1	93	46.543	ENSFDAG00000016478	R3HDM1	82	63.196	Fukomys_damarensis
ENSTRUG00000011654	r3hdm1	99	70.722	ENSFHEG00000018713	r3hdm1	100	70.817	Fundulus_heteroclitus
ENSTRUG00000011654	r3hdm1	65	61.099	ENSGMOG00000006042	-	79	55.052	Gadus_morhua
ENSTRUG00000011654	r3hdm1	80	64.169	ENSGALG00000012246	R3HDM1	85	64.169	Gallus_gallus
ENSTRUG00000011654	r3hdm1	99	70.355	ENSGAFG00000006203	r3hdm1	100	70.660	Gambusia_affinis
ENSTRUG00000011654	r3hdm1	94	76.367	ENSGACG00000014925	r3hdm1	92	76.367	Gasterosteus_aculeatus
ENSTRUG00000011654	r3hdm1	85	62.733	ENSGAGG00000007840	R3HDM1	76	62.733	Gopherus_agassizii
ENSTRUG00000011654	r3hdm1	91	57.841	ENSGGOG00000008156	R3HDM1	81	67.532	Gorilla_gorilla
ENSTRUG00000011654	r3hdm1	53	75.000	ENSHBUG00000015737	R3HDM1	96	75.000	Haplochromis_burtoni
ENSTRUG00000011654	r3hdm1	93	46.956	ENSHGLG00000015718	R3HDM1	89	60.222	Heterocephalus_glaber_female
ENSTRUG00000011654	r3hdm1	93	46.956	ENSHGLG00100003184	-	89	60.222	Heterocephalus_glaber_male
ENSTRUG00000011654	r3hdm1	91	41.079	ENSHGLG00100015374	-	85	40.374	Heterocephalus_glaber_male
ENSTRUG00000011654	r3hdm1	99	64.868	ENSHCOG00000013366	r3hdm1	100	64.868	Hippocampus_comes
ENSTRUG00000011654	r3hdm1	85	69.811	ENSIPUG00000001676	R3HDM1	89	70.358	Ictalurus_punctatus
ENSTRUG00000011654	r3hdm1	91	59.631	ENSIPUG00000013629	r3hdm1	81	67.763	Ictalurus_punctatus
ENSTRUG00000011654	r3hdm1	93	47.198	ENSSTOG00000007572	R3HDM1	89	60.089	Ictidomys_tridecemlineatus
ENSTRUG00000011654	r3hdm1	93	49.437	ENSLACG00000005334	R3HDM1	83	49.231	Latimeria_chalumnae
ENSTRUG00000011654	r3hdm1	93	49.184	ENSLOCG00000001641	r3hdm1	80	49.389	Lepisosteus_oculatus
ENSTRUG00000011654	r3hdm1	93	47.016	ENSLAFG00000009065	R3HDM1	81	66.881	Loxodonta_africana
ENSTRUG00000011654	r3hdm1	84	67.532	ENSMFAG00000030331	R3HDM1	81	67.532	Macaca_fascicularis
ENSTRUG00000011654	r3hdm1	91	57.841	ENSMMUG00000009844	R3HDM1	81	67.532	Macaca_mulatta
ENSTRUG00000011654	r3hdm1	84	67.532	ENSMNEG00000027793	R3HDM1	81	67.532	Macaca_nemestrina
ENSTRUG00000011654	r3hdm1	91	57.841	ENSMLEG00000043189	R3HDM1	81	67.532	Mandrillus_leucophaeus
ENSTRUG00000011654	r3hdm1	99	77.734	ENSMAMG00000004532	r3hdm1	100	77.734	Mastacembelus_armatus
ENSTRUG00000011654	r3hdm1	99	76.390	ENSMZEG00005003157	r3hdm1	100	76.293	Maylandia_zebra
ENSTRUG00000011654	r3hdm1	88	46.959	ENSMGAG00000012461	R3HDM1	78	46.945	Meleagris_gallopavo
ENSTRUG00000011654	r3hdm1	93	46.962	ENSMAUG00000010315	R3hdm1	89	59.556	Mesocricetus_auratus
ENSTRUG00000011654	r3hdm1	91	58.290	ENSMICG00000042655	-	92	58.290	Microcebus_murinus
ENSTRUG00000011654	r3hdm1	91	58.549	ENSMICG00000005900	-	87	58.549	Microcebus_murinus
ENSTRUG00000011654	r3hdm1	93	45.683	ENSMODG00000000923	R3HDM1	85	45.683	Monodelphis_domestica
ENSTRUG00000011654	r3hdm1	99	75.600	ENSMALG00000009000	r3hdm1	90	75.504	Monopterus_albus
ENSTRUG00000011654	r3hdm1	93	46.392	MGP_CAROLIEiJ_G0014543	R3hdm1	89	60.356	Mus_caroli
ENSTRUG00000011654	r3hdm1	93	46.186	ENSMUSG00000056211	R3hdm1	89	60.356	Mus_musculus
ENSTRUG00000011654	r3hdm1	93	45.876	MGP_PahariEiJ_G0027779	R3hdm1	73	76.111	Mus_pahari
ENSTRUG00000011654	r3hdm1	93	46.186	MGP_SPRETEiJ_G0015350	R3hdm1	89	60.356	Mus_spretus
ENSTRUG00000011654	r3hdm1	93	47.249	ENSMPUG00000002412	R3HDM1	79	47.532	Mustela_putorius_furo
ENSTRUG00000011654	r3hdm1	93	46.470	ENSMLUG00000013824	R3HDM1	79	47.078	Myotis_lucifugus
ENSTRUG00000011654	r3hdm1	84	67.208	ENSNLEG00000008622	R3HDM1	81	67.208	Nomascus_leucogenys
ENSTRUG00000011654	r3hdm1	86	43.464	ENSMEUG00000011784	R3HDM1	81	43.719	Notamacropus_eugenii
ENSTRUG00000011654	r3hdm1	93	46.336	ENSODEG00000008607	R3HDM1	89	60.222	Octodon_degus
ENSTRUG00000011654	r3hdm1	94	75.424	ENSONIG00000012017	r3hdm1	85	76.017	Oreochromis_niloticus
ENSTRUG00000011654	r3hdm1	93	45.484	ENSOANG00000007987	R3HDM1	79	46.895	Ornithorhynchus_anatinus
ENSTRUG00000011654	r3hdm1	93	47.091	ENSOCUG00000017366	R3HDM1	86	47.261	Oryctolagus_cuniculus
ENSTRUG00000011654	r3hdm1	99	67.449	ENSORLG00000004297	r3hdm1	100	68.163	Oryzias_latipes
ENSTRUG00000011654	r3hdm1	99	67.276	ENSORLG00015017355	r3hdm1	100	67.333	Oryzias_latipes_hsok
ENSTRUG00000011654	r3hdm1	52	70.391	ENSOMEG00000003882	-	98	70.391	Oryzias_melastigma
ENSTRUG00000011654	r3hdm1	93	46.659	ENSOGAG00000003136	R3HDM1	79	47.368	Otolemur_garnettii
ENSTRUG00000011654	r3hdm1	93	47.198	ENSOARG00000010788	R3HDM1	79	47.639	Ovis_aries
ENSTRUG00000011654	r3hdm1	91	57.841	ENSPPAG00000027858	R3HDM1	81	67.532	Pan_paniscus
ENSTRUG00000011654	r3hdm1	91	58.549	ENSPPRG00000002626	R3HDM1	87	58.549	Panthera_pardus
ENSTRUG00000011654	r3hdm1	91	58.808	ENSPTIG00000016581	R3HDM1	87	58.808	Panthera_tigris_altaica
ENSTRUG00000011654	r3hdm1	91	57.841	ENSPTRG00000012494	R3HDM1	81	67.532	Pan_troglodytes
ENSTRUG00000011654	r3hdm1	91	57.841	ENSPANG00000026448	R3HDM1	81	67.532	Papio_anubis
ENSTRUG00000011654	r3hdm1	86	72.669	ENSPKIG00000004328	r3hdm1	78	71.704	Paramormyrops_kingsleyae
ENSTRUG00000011654	r3hdm1	93	46.316	ENSPSIG00000012915	R3HDM1	80	46.793	Pelodiscus_sinensis
ENSTRUG00000011654	r3hdm1	93	46.495	ENSPEMG00000015187	R3hdm1	89	60.000	Peromyscus_maniculatus_bairdii
ENSTRUG00000011654	r3hdm1	92	37.576	ENSPMAG00000003369	-	90	38.052	Petromyzon_marinus
ENSTRUG00000011654	r3hdm1	84	66.774	ENSPCIG00000002491	R3HDM1	77	66.774	Phascolarctos_cinereus
ENSTRUG00000011654	r3hdm1	99	69.763	ENSPFOG00000015036	r3hdm1	100	69.043	Poecilia_formosa
ENSTRUG00000011654	r3hdm1	99	71.125	ENSPLAG00000018042	r3hdm1	100	71.125	Poecilia_latipinna
ENSTRUG00000011654	r3hdm1	99	70.951	ENSPMEG00000023947	r3hdm1	100	70.951	Poecilia_mexicana
ENSTRUG00000011654	r3hdm1	99	71.150	ENSPREG00000007902	r3hdm1	100	71.248	Poecilia_reticulata
ENSTRUG00000011654	r3hdm1	93	45.699	ENSPPYG00000012815	R3HDM1	79	45.905	Pongo_abelii
ENSTRUG00000011654	r3hdm1	80	69.163	ENSPCAG00000006208	R3HDM1	65	68.860	Procavia_capensis
ENSTRUG00000011654	r3hdm1	80	69.818	ENSPCOG00000012698	R3HDM1	79	69.818	Propithecus_coquereli
ENSTRUG00000011654	r3hdm1	93	41.622	ENSPVAG00000006098	R3HDM1	79	41.765	Pteropus_vampyrus
ENSTRUG00000011654	r3hdm1	83	70.064	ENSPNAG00000013952	r3hdm1	77	71.053	Pygocentrus_nattereri
ENSTRUG00000011654	r3hdm1	84	71.053	ENSPNAG00000005436	R3HDM1	87	70.066	Pygocentrus_nattereri
ENSTRUG00000011654	r3hdm1	93	46.598	ENSRNOG00000004099	R3hdm1	79	46.667	Rattus_norvegicus
ENSTRUG00000011654	r3hdm1	80	69.928	ENSRBIG00000033317	R3HDM1	86	69.928	Rhinopithecus_bieti
ENSTRUG00000011654	r3hdm1	91	57.841	ENSRROG00000034534	R3HDM1	81	67.532	Rhinopithecus_roxellana
ENSTRUG00000011654	r3hdm1	84	67.857	ENSSBOG00000020389	R3HDM1	81	67.857	Saimiri_boliviensis_boliviensis
ENSTRUG00000011654	r3hdm1	99	45.644	ENSSHAG00000016999	R3HDM1	88	45.581	Sarcophilus_harrisii
ENSTRUG00000011654	r3hdm1	99	49.810	ENSSFOG00015014134	r3hdm1	79	71.383	Scleropages_formosus
ENSTRUG00000011654	r3hdm1	99	46.118	ENSSFOG00015019851	-	94	54.396	Scleropages_formosus
ENSTRUG00000011654	r3hdm1	99	75.226	ENSSMAG00000001669	r3hdm1	90	75.226	Scophthalmus_maximus
ENSTRUG00000011654	r3hdm1	99	77.588	ENSSDUG00000010749	r3hdm1	100	78.090	Seriola_dumerili
ENSTRUG00000011654	r3hdm1	99	76.482	ENSSLDG00000004499	r3hdm1	90	76.877	Seriola_lalandi_dorsalis
ENSTRUG00000011654	r3hdm1	93	46.652	ENSSPUG00000004167	R3HDM1	80	47.046	Sphenodon_punctatus
ENSTRUG00000011654	r3hdm1	99	78.852	ENSSPAG00000004648	r3hdm1	100	78.953	Stegastes_partitus
ENSTRUG00000011654	r3hdm1	91	55.670	ENSSSCG00000015692	R3HDM1	87	55.670	Sus_scrofa
ENSTRUG00000011654	r3hdm1	89	45.746	ENSTGUG00000011750	R3HDM1	79	45.396	Taeniopygia_guttata
ENSTRUG00000011654	r3hdm1	97	76.653	ENSTNIG00000010362	r3hdm1	99	76.412	Tetraodon_nigroviridis
ENSTRUG00000011654	r3hdm1	93	45.820	ENSTTRG00000003935	R3HDM1	79	46.378	Tursiops_truncatus
ENSTRUG00000011654	r3hdm1	71	57.841	ENSUAMG00000024806	R3HDM1	93	57.841	Ursus_americanus
ENSTRUG00000011654	r3hdm1	91	57.841	ENSUMAG00000005552	R3HDM1	87	57.841	Ursus_maritimus
ENSTRUG00000011654	r3hdm1	87	46.286	ENSVPAG00000007333	R3HDM1	74	46.735	Vicugna_pacos
ENSTRUG00000011654	r3hdm1	91	57.841	ENSVVUG00000006457	R3HDM1	88	57.841	Vulpes_vulpes
ENSTRUG00000011654	r3hdm1	92	43.717	ENSXETG00000019330	r3hdm1	87	45.230	Xenopus_tropicalis
ENSTRUG00000011654	r3hdm1	77	68.643	ENSXCOG00000017448	r3hdm1	93	69.170	Xiphophorus_couchianus
ENSTRUG00000011654	r3hdm1	99	70.355	ENSXMAG00000007885	r3hdm1	100	69.553	Xiphophorus_maculatus