EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000011765 (Gene tree)
Gene ID: 101064207
Gene Symbol: -
Alias: -
Full Name: pre-mRNA processing factor 38B
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 5018 bases
Position: chr22:7644981-7649998
Accession: 101064207
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000029701	PRP38	PF03371.15	4e-54	1	1
ENSTRUP00000029700	PRP38	PF03371.15	4.3e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000029818	-	3093	XM_003975664	ENSTRUP00000029701	461 (aa)	XP_003975713	H2TYE2
ENSTRUT00000029817	-	1428	-	ENSTRUP00000029700	475 (aa)	-	H2TYE1

Gene Model

Click here to download ENSTRUG00000011765's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000011765's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000011765	-	100	85.591	ENSATEG00000014482	-	99	85.161	Anabas_testudineus
ENSTRUG00000011765	-	60	83.094	ENSBTAG00000047874	PRPF38B	78	62.128	Bos_taurus
ENSTRUG00000011765	-	59	45.387	WBGene00022434	Y108G3AL.2	68	51.121	Caenorhabditis_elegans
ENSTRUG00000011765	-	59	71.014	ENSCAFG00020010992	-	68	60.614	Canis_lupus_dingo
ENSTRUG00000011765	-	60	83.094	ENSCHIG00000024357	-	78	62.128	Capra_hircus
ENSTRUG00000011765	-	59	83.333	ENSCPOG00000039545	-	71	69.643	Cavia_porcellus
ENSTRUG00000011765	-	59	82.909	ENSCLAG00000005801	-	71	68.861	Chinchilla_lanigera
ENSTRUG00000011765	-	50	83.621	ENSCPBG00000028299	-	77	62.232	Chrysemys_picta_bellii
ENSTRUG00000011765	-	69	53.251	ENSCSAVG00000009443	-	77	67.943	Ciona_savignyi
ENSTRUG00000011765	-	100	81.663	ENSCSEG00000015030	-	100	79.957	Cynoglossus_semilaevis
ENSTRUG00000011765	-	60	81.227	ENSETEG00000014690	-	85	67.784	Echinops_telfairi
ENSTRUG00000011765	-	99	64.854	ENSELUG00000010390	-	96	64.922	Esox_lucius
ENSTRUG00000011765	-	98	75.378	ENSGMOG00000012080	-	98	76.026	Gadus_morhua
ENSTRUG00000011765	-	94	59.604	ENSGALG00000001972	-	78	61.571	Gallus_gallus
ENSTRUG00000011765	-	100	78.233	ENSGAFG00000008943	-	99	79.095	Gambusia_affinis
ENSTRUG00000011765	-	99	60.672	ENSGAGG00000001563	-	77	62.446	Gopherus_agassizii
ENSTRUG00000011765	-	80	67.617	ENSHGLG00000016583	PRPF38B	71	69.192	Heterocephalus_glaber_female
ENSTRUG00000011765	-	80	67.617	ENSHGLG00100015525	-	71	67.424	Heterocephalus_glaber_male
ENSTRUG00000011765	-	100	80.994	ENSHCOG00000001071	-	100	80.994	Hippocampus_comes
ENSTRUG00000011765	-	100	81.356	ENSKMAG00000005540	-	99	81.780	Kryptolebias_marmoratus
ENSTRUG00000011765	-	98	57.393	ENSLACG00000015511	-	71	68.205	Latimeria_chalumnae
ENSTRUG00000011765	-	60	83.032	ENSMOCG00000020285	-	70	70.103	Microtus_ochrogaster
ENSTRUG00000011765	-	99	88.769	ENSMMOG00000011639	-	99	88.553	Mola_mola
ENSTRUG00000011765	-	67	78.247	ENSMODG00000002350	-	85	83.824	Monodelphis_domestica
ENSTRUG00000011765	-	100	83.871	ENSMALG00000019479	-	99	84.731	Monopterus_albus
ENSTRUG00000011765	-	98	87.473	ENSONIG00000010129	-	98	87.253	Oreochromis_niloticus
ENSTRUG00000011765	-	93	64.120	ENSOANG00000007343	-	65	82.686	Ornithorhynchus_anatinus
ENSTRUG00000011765	-	100	83.226	ENSORLG00000015621	-	93	94.410	Oryzias_latipes
ENSTRUG00000011765	-	100	83.226	ENSORLG00020016276	-	93	94.410	Oryzias_latipes_hni
ENSTRUG00000011765	-	100	83.441	ENSORLG00015016270	-	99	81.857	Oryzias_latipes_hsok
ENSTRUG00000011765	-	100	83.871	ENSOMEG00000022050	-	96	93.293	Oryzias_melastigma
ENSTRUG00000011765	-	59	83.696	ENSOGAG00000027048	-	77	61.456	Otolemur_garnettii
ENSTRUG00000011765	-	57	84.962	ENSOARG00000018899	-	80	61.441	Ovis_aries
ENSTRUG00000011765	-	99	65.941	ENSPKIG00000004815	-	94	65.631	Paramormyrops_kingsleyae
ENSTRUG00000011765	-	99	69.690	ENSPKIG00000017291	-	82	65.351	Paramormyrops_kingsleyae
ENSTRUG00000011765	-	100	78.017	ENSPFOG00000004025	-	99	78.879	Poecilia_formosa
ENSTRUG00000011765	-	100	78.017	ENSPLAG00000019842	-	99	78.879	Poecilia_latipinna
ENSTRUG00000011765	-	99	78.139	ENSPMEG00000004807	-	96	79.004	Poecilia_mexicana
ENSTRUG00000011765	-	100	77.371	ENSPREG00000015599	-	88	92.547	Poecilia_reticulata
ENSTRUG00000011765	-	61	82.979	ENSPNAG00000017484	-	94	68.182	Pygocentrus_nattereri
ENSTRUG00000011765	-	59	82.971	ENSRNOG00000020438	Prpf38b	72	68.939	Rattus_norvegicus
ENSTRUG00000011765	-	94	70.222	ENSSFOG00015011251	-	84	89.441	Scleropages_formosus
ENSTRUG00000011765	-	100	85.161	ENSSLDG00000023487	-	99	88.197	Seriola_lalandi_dorsalis
ENSTRUG00000011765	-	95	87.037	ENSTNIG00000015299	-	99	75.106	Tetraodon_nigroviridis
ENSTRUG00000011765	-	59	74.182	ENSTBEG00000007504	-	74	63.402	Tupaia_belangeri
ENSTRUG00000011765	-	59	83.696	ENSTTRG00000006479	-	71	69.289	Tursiops_truncatus
ENSTRUG00000011765	-	73	58.382	ENSVPAG00000005541	-	71	59.542	Vicugna_pacos
ENSTRUG00000011765	-	96	57.692	ENSXETG00000005260	prpf38b	54	83.813	Xenopus_tropicalis
ENSTRUG00000011765	-	100	81.290	ENSXCOG00000008329	-	99	78.879	Xiphophorus_couchianus
ENSTRUG00000011765	-	100	81.290	ENSXMAG00000023831	-	99	78.879	Xiphophorus_maculatus