EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000011891 (Gene tree)
Gene ID: 101080136
Gene Symbol: srsf4
Alias: sfrs4|wu:fb37e02|wu:fj35e06|zgc:152957|zgc:55809
Full Name: serine/arginine-rich splicing factor 4-like
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 3128 bases
Position: chr12:7500762-7503889
Accession: 101080136
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000030062	RRM_1	PF00076.22	2.3e-32	1	2
ENSTRUP00000030062	RRM_1	PF00076.22	2.3e-32	2	2
ENSTRUP00000050756	RRM_1	PF00076.22	4.2e-32	1	2
ENSTRUP00000050756	RRM_1	PF00076.22	4.2e-32	2	2
ENSTRUP00000030061	RRM_1	PF00076.22	9e-31	1	2
ENSTRUP00000030061	RRM_1	PF00076.22	9e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000049979	-	1140	-	ENSTRUP00000050756	379 (aa)	-	-
ENSTRUT00000030178	-	1080	XM_003969190	ENSTRUP00000030061	359 (aa)	XP_003969239	H2TZF2
ENSTRUT00000030179	-	927	-	ENSTRUP00000030062	308 (aa)	-	H2TZF3

Gene Model

Click here to download ENSTRUG00000011891's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03040	Spliceosome	KEGG
tru05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000011891's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000011891	srsf4	58	42.935	ENSTRUG00000003691	srsf1a	66	46.951
ENSTRUG00000011891	srsf4	61	60.847	ENSTRUG00000022908	srsf5a	64	60.106
ENSTRUG00000011891	srsf4	60	59.278	ENSTRUG00000017811	srsf5b	80	48.718
ENSTRUG00000011891	srsf4	58	38.043	ENSTRUG00000017058	-	67	45.062

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000011891	srsf4	62	80.729	ENSG00000116350	SRSF4	53	83.333	Homo_sapiens
ENSTRUG00000011891	srsf4	86	80.511	ENSAPOG00000020244	srsf4	88	78.931	Acanthochromis_polyacanthus
ENSTRUG00000011891	srsf4	62	71.204	ENSAPOG00000023399	-	60	74.157	Acanthochromis_polyacanthus
ENSTRUG00000011891	srsf4	85	73.282	ENSACIG00000018649	srsf4	90	94.958	Amphilophus_citrinellus
ENSTRUG00000011891	srsf4	57	82.386	ENSAOCG00000005997	srsf4	92	94.375	Amphiprion_ocellaris
ENSTRUG00000011891	srsf4	71	71.111	ENSAPEG00000020826	srsf4	83	75.379	Amphiprion_percula
ENSTRUG00000011891	srsf4	83	87.938	ENSATEG00000005680	srsf4	83	88.168	Anabas_testudineus
ENSTRUG00000011891	srsf4	98	56.948	ENSANAG00000037134	SRSF4	63	68.364	Aotus_nancymaae
ENSTRUG00000011891	srsf4	80	84.861	ENSACLG00000003395	srsf4	90	94.118	Astatotilapia_calliptera
ENSTRUG00000011891	srsf4	63	83.420	ENSAMXG00000034811	srsf4	96	70.943	Astyanax_mexicanus
ENSTRUG00000011891	srsf4	62	80.729	ENSBTAG00000013309	SRSF4	53	68.364	Bos_taurus
ENSTRUG00000011891	srsf4	61	50.754	WBGene00004698	rsp-1	97	52.027	Caenorhabditis_elegans
ENSTRUG00000011891	srsf4	83	65.441	ENSCHIG00000022096	SRSF4	54	67.626	Capra_hircus
ENSTRUG00000011891	srsf4	62	80.829	ENSCATG00000031440	SRSF4	52	68.364	Cercocebus_atys
ENSTRUG00000011891	srsf4	62	80.729	ENSCSAG00000001022	SRSF4	52	68.364	Chlorocebus_sabaeus
ENSTRUG00000011891	srsf4	60	58.378	ENSCING00000011362	-	84	47.909	Ciona_intestinalis
ENSTRUG00000011891	srsf4	98	45.338	ENSCING00000012370	-	93	56.827	Ciona_intestinalis
ENSTRUG00000011891	srsf4	61	56.250	ENSCING00000024718	-	56	55.959	Ciona_intestinalis
ENSTRUG00000011891	srsf4	62	59.391	ENSCING00000020631	-	81	58.163	Ciona_intestinalis
ENSTRUG00000011891	srsf4	61	62.234	ENSCSAVG00000002581	-	70	62.983	Ciona_savignyi
ENSTRUG00000011891	srsf4	62	80.729	ENSCANG00000028667	SRSF4	52	68.364	Colobus_angolensis_palliatus
ENSTRUG00000011891	srsf4	69	92.754	ENSCSEG00000010058	srsf4	85	94.118	Cynoglossus_semilaevis
ENSTRUG00000011891	srsf4	82	63.175	ENSDARG00000105293	srsf4	72	90.789	Danio_rerio
ENSTRUG00000011891	srsf4	61	61.702	FBgn0004587	B52	95	59.375	Drosophila_melanogaster
ENSTRUG00000011891	srsf4	55	55.814	ENSEBUG00000003129	srsf4	69	62.092	Eptatretus_burgeri
ENSTRUG00000011891	srsf4	62	58.947	ENSEBUG00000001681	srsf4	67	60.335	Eptatretus_burgeri
ENSTRUG00000011891	srsf4	62	80.829	ENSEEUG00000008479	SRSF4	53	70.330	Erinaceus_europaeus
ENSTRUG00000011891	srsf4	97	70.130	ENSELUG00000017551	srsf4	93	74.265	Esox_lucius
ENSTRUG00000011891	srsf4	62	80.729	ENSFCAG00000027821	SRSF4	53	68.364	Felis_catus
ENSTRUG00000011891	srsf4	87	76.471	ENSFHEG00000007472	srsf4	89	97.590	Fundulus_heteroclitus
ENSTRUG00000011891	srsf4	62	82.812	ENSGMOG00000012906	srsf4	57	87.778	Gadus_morhua
ENSTRUG00000011891	srsf4	74	92.754	ENSGAFG00000018496	srsf4	89	71.161	Gambusia_affinis
ENSTRUG00000011891	srsf4	63	88.601	ENSGACG00000002389	srsf4	83	79.623	Gasterosteus_aculeatus
ENSTRUG00000011891	srsf4	62	80.729	ENSGGOG00000002444	SRSF4	52	68.364	Gorilla_gorilla
ENSTRUG00000011891	srsf4	79	96.970	ENSHCOG00000012540	srsf4	69	90.323	Hippocampus_comes
ENSTRUG00000011891	srsf4	63	88.144	ENSKMAG00000013631	srsf4	88	80.889	Kryptolebias_marmoratus
ENSTRUG00000011891	srsf4	61	73.016	ENSLOCG00000001442	-	50	73.057	Lepisosteus_oculatus
ENSTRUG00000011891	srsf4	62	80.729	ENSLAFG00000002575	SRSF4	54	71.053	Loxodonta_africana
ENSTRUG00000011891	srsf4	62	80.729	ENSMFAG00000041784	SRSF4	52	68.364	Macaca_fascicularis
ENSTRUG00000011891	srsf4	78	63.736	ENSMMUG00000007110	SRSF4	61	67.293	Macaca_mulatta
ENSTRUG00000011891	srsf4	62	80.729	ENSMNEG00000034931	SRSF4	52	68.364	Macaca_nemestrina
ENSTRUG00000011891	srsf4	62	80.729	ENSMLEG00000031619	SRSF4	52	68.364	Mandrillus_leucophaeus
ENSTRUG00000011891	srsf4	79	92.754	ENSMAMG00000004888	srsf4	83	92.647	Mastacembelus_armatus
ENSTRUG00000011891	srsf4	80	84.861	ENSMZEG00005026275	srsf4	91	83.333	Maylandia_zebra
ENSTRUG00000011891	srsf4	83	86.424	ENSMMOG00000013653	srsf4	84	92.647	Mola_mola
ENSTRUG00000011891	srsf4	62	81.250	ENSMODG00000011052	SRSF4	72	71.053	Monodelphis_domestica
ENSTRUG00000011891	srsf4	94	80.403	ENSMALG00000013392	srsf4	92	80.685	Monopterus_albus
ENSTRUG00000011891	srsf4	62	80.829	ENSMUSG00000028911	Srsf4	55	66.783	Mus_musculus
ENSTRUG00000011891	srsf4	62	80.829	MGP_SPRETEiJ_G0027535	Srsf4	55	66.783	Mus_spretus
ENSTRUG00000011891	srsf4	62	80.729	ENSNLEG00000009916	SRSF4	52	68.364	Nomascus_leucogenys
ENSTRUG00000011891	srsf4	62	65.464	ENSNLEG00000030787	-	84	58.779	Nomascus_leucogenys
ENSTRUG00000011891	srsf4	60	67.123	ENSORLG00000009430	-	83	66.986	Oryzias_latipes
ENSTRUG00000011891	srsf4	90	78.623	ENSORLG00020016052	srsf4	87	80.075	Oryzias_latipes_hni
ENSTRUG00000011891	srsf4	88	75.074	ENSORLG00015007566	srsf4	99	73.962	Oryzias_latipes_hsok
ENSTRUG00000011891	srsf4	91	66.269	ENSOMEG00000005541	srsf4	51	93.889	Oryzias_melastigma
ENSTRUG00000011891	srsf4	50	78.205	ENSOARG00000002451	SRSF4	68	66.524	Ovis_aries
ENSTRUG00000011891	srsf4	62	80.729	ENSPPAG00000028357	SRSF4	52	68.364	Pan_paniscus
ENSTRUG00000011891	srsf4	62	80.729	ENSPPRG00000016248	SRSF4	53	68.364	Panthera_pardus
ENSTRUG00000011891	srsf4	62	80.729	ENSPTRG00000000445	SRSF4	52	68.364	Pan_troglodytes
ENSTRUG00000011891	srsf4	62	80.729	ENSPANG00000021937	SRSF4	52	68.364	Papio_anubis
ENSTRUG00000011891	srsf4	75	83.193	ENSPMGG00000013436	srsf4	95	87.402	Periophthalmus_magnuspinnatus
ENSTRUG00000011891	srsf4	98	72.207	ENSPLAG00000008812	srsf4	89	92.754	Poecilia_latipinna
ENSTRUG00000011891	srsf4	98	68.649	ENSPMEG00000023638	srsf4	86	92.754	Poecilia_mexicana
ENSTRUG00000011891	srsf4	79	97.015	ENSPREG00000009639	srsf4	82	69.677	Poecilia_reticulata
ENSTRUG00000011891	srsf4	62	80.729	ENSPPYG00000001629	SRSF4	52	68.364	Pongo_abelii
ENSTRUG00000011891	srsf4	80	74.349	ENSPNYG00000003796	srsf4	91	79.153	Pundamilia_nyererei
ENSTRUG00000011891	srsf4	61	84.127	ENSPNAG00000023844	srsf4	84	67.474	Pygocentrus_nattereri
ENSTRUG00000011891	srsf4	62	80.829	ENSRNOG00000010007	Srsf4	55	66.783	Rattus_norvegicus
ENSTRUG00000011891	srsf4	62	80.729	ENSRBIG00000035789	SRSF4	52	68.364	Rhinopithecus_bieti
ENSTRUG00000011891	srsf4	62	80.729	ENSRROG00000029463	SRSF4	52	68.364	Rhinopithecus_roxellana
ENSTRUG00000011891	srsf4	52	77.640	ENSSHAG00000012407	SRSF4	50	82.639	Sarcophilus_harrisii
ENSTRUG00000011891	srsf4	95	64.630	ENSSFOG00015020292	srsf4	82	89.189	Scleropages_formosus
ENSTRUG00000011891	srsf4	97	74.309	ENSSMAG00000001707	srsf4	76	69.930	Scophthalmus_maximus
ENSTRUG00000011891	srsf4	86	73.968	ENSSDUG00000007387	srsf4	86	75.338	Seriola_dumerili
ENSTRUG00000011891	srsf4	84	65.637	ENSSLDG00000009745	srsf4	82	67.045	Seriola_lalandi_dorsalis
ENSTRUG00000011891	srsf4	95	78.231	ENSSPAG00000014538	srsf4	90	94.118	Stegastes_partitus
ENSTRUG00000011891	srsf4	77	91.237	ENSTNIG00000005573	srsf4	89	79.883	Tetraodon_nigroviridis
ENSTRUG00000011891	srsf4	93	91.089	ENSTNIG00000000115	-	81	78.931	Tetraodon_nigroviridis
ENSTRUG00000011891	srsf4	62	80.729	ENSTTRG00000002572	SRSF4	53	68.364	Tursiops_truncatus
ENSTRUG00000011891	srsf4	100	66.755	ENSXCOG00000018826	srsf4	89	87.288	Xiphophorus_couchianus
ENSTRUG00000011891	srsf4	62	70.681	ENSXCOG00000003212	-	73	58.915	Xiphophorus_couchianus