EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000012320 (Gene tree)
Gene ID: -
Gene Symbol: polr2a
Alias: im:7136071
Full Name: RNA polymerase II subunit A
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 9085 bases
Position: chr8:13048592-13057676
Accession: 101067103
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000031193	RNA_pol_Rpb1_5	PF04998.17	4.3e-98	1	1
ENSTRUP00000031193	RNA_pol_Rpb1_4	PF05000.17	1.1e-37	1	1
ENSTRUP00000031193	RNA_pol_Rpb1_2	PF00623.20	2.4e-70	1	1
ENSTRUP00000031193	RNA_pol_Rpb1_3	PF04983.18	3e-48	1	1
ENSTRUP00000031193	RNA_pol_Rpb1_1	PF04997.12	2.2e-106	1	1
ENSTRUP00000031193	RNA_pol_Rpb1_7	PF04990.12	3e-15	1	1
ENSTRUP00000031193	RNA_pol_Rpb1_6	PF04992.14	2.3e-61	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000031314	-	5714	XM_003966913	ENSTRUP00000031193	1904 (aa)	XP_003966962	H2U2N2

Gene Model

Click here to download ENSTRUG00000012320's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000012320's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000012320	polr2a	57	32.381	ENSTRUG00000002210	polr1a	67	32.381
ENSTRUG00000012320	polr2a	66	37.852	ENSTRUG00000013488	polr3a	93	37.852

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000012320	polr2a	78	90.812	ENSAPOG00000006552	polr2a	91	86.946	Acanthochromis_polyacanthus
ENSTRUG00000012320	polr2a	81	88.235	ENSAMEG00000016265	-	99	88.250	Ailuropoda_melanoleuca
ENSTRUG00000012320	polr2a	81	89.820	ENSACIG00000015982	polr2a	98	90.208	Amphilophus_citrinellus
ENSTRUG00000012320	polr2a	81	90.317	ENSAOCG00000004255	polr2a	98	90.698	Amphiprion_ocellaris
ENSTRUG00000012320	polr2a	81	93.186	ENSAPEG00000012623	polr2a	98	93.186	Amphiprion_percula
ENSTRUG00000012320	polr2a	81	92.879	ENSATEG00000019644	polr2a	98	92.879	Anabas_testudineus
ENSTRUG00000012320	polr2a	81	89.075	ENSACAG00000014561	POLR2A	99	89.089	Anolis_carolinensis
ENSTRUG00000012320	polr2a	81	88.586	ENSANAG00000020093	-	99	88.600	Aotus_nancymaae
ENSTRUG00000012320	polr2a	81	92.436	ENSACLG00000006735	polr2a	98	92.511	Astatotilapia_calliptera
ENSTRUG00000012320	polr2a	81	92.002	ENSAMXG00000020046	polr2a	98	92.002	Astyanax_mexicanus
ENSTRUG00000012320	polr2a	81	88.586	ENSBTAG00000046765	POLR2A	99	88.600	Bos_taurus
ENSTRUG00000012320	polr2a	81	70.929	WBGene00000123	ama-1	96	70.568	Caenorhabditis_elegans
ENSTRUG00000012320	polr2a	81	88.524	ENSCAFG00000016532	POLR2A	99	88.538	Canis_familiaris
ENSTRUG00000012320	polr2a	81	87.779	ENSCAFG00020007929	-	99	87.794	Canis_lupus_dingo
ENSTRUG00000012320	polr2a	81	88.586	ENSCHIG00000027173	-	99	88.600	Capra_hircus
ENSTRUG00000012320	polr2a	81	87.734	ENSTSYG00000012803	-	99	86.600	Carlito_syrichta
ENSTRUG00000012320	polr2a	80	88.274	ENSCAPG00000001882	-	99	87.674	Cavia_aperea
ENSTRUG00000012320	polr2a	81	88.250	ENSCPOG00000014812	-	99	87.392	Cavia_porcellus
ENSTRUG00000012320	polr2a	81	88.586	ENSCCAG00000020938	-	99	88.600	Cebus_capucinus
ENSTRUG00000012320	polr2a	81	88.586	ENSCATG00000013680	-	99	88.600	Cercocebus_atys
ENSTRUG00000012320	polr2a	81	88.462	ENSCLAG00000012196	-	99	88.476	Chinchilla_lanigera
ENSTRUG00000012320	polr2a	79	93.220	ENSCSAG00000011644	-	94	93.258	Chlorocebus_sabaeus
ENSTRUG00000012320	polr2a	81	85.289	ENSCPBG00000012697	POLR2A	98	85.183	Chrysemys_picta_bellii
ENSTRUG00000012320	polr2a	81	75.333	ENSCING00000007884	-	99	70.828	Ciona_intestinalis
ENSTRUG00000012320	polr2a	81	74.627	ENSCSAVG00000008334	-	98	74.627	Ciona_savignyi
ENSTRUG00000012320	polr2a	81	87.903	ENSCANG00000010622	-	99	87.918	Colobus_angolensis_palliatus
ENSTRUG00000012320	polr2a	81	82.657	ENSCGRG00001003538	Polr2a	99	82.598	Cricetulus_griseus_chok1gshd
ENSTRUG00000012320	polr2a	80	85.031	ENSCGRG00000012105	Polr2a	97	85.052	Cricetulus_griseus_crigri
ENSTRUG00000012320	polr2a	81	91.816	ENSCSEG00000002635	polr2a	98	91.816	Cynoglossus_semilaevis
ENSTRUG00000012320	polr2a	81	92.312	ENSCVAG00000005156	polr2a	98	92.312	Cyprinodon_variegatus
ENSTRUG00000012320	polr2a	81	91.321	ENSDARG00000099966	polr2a	98	91.321	Danio_rerio
ENSTRUG00000012320	polr2a	81	85.847	ENSDNOG00000016482	-	99	85.865	Dasypus_novemcinctus
ENSTRUG00000012320	polr2a	81	88.586	ENSDORG00000008667	Polr2a	99	88.600	Dipodomys_ordii
ENSTRUG00000012320	polr2a	81	66.381	FBgn0003277	RpII215	98	67.537	Drosophila_melanogaster
ENSTRUG00000012320	polr2a	74	90.566	ENSETEG00000002540	-	74	92.982	Echinops_telfairi
ENSTRUG00000012320	polr2a	81	79.988	ENSEBUG00000013967	polr2a	99	79.752	Eptatretus_burgeri
ENSTRUG00000012320	polr2a	81	86.538	ENSEASG00005019114	-	99	86.555	Equus_asinus_asinus
ENSTRUG00000012320	polr2a	81	88.586	ENSECAG00000018485	POLR2A	99	88.600	Equus_caballus
ENSTRUG00000012320	polr2a	75	85.857	ENSEEUG00000001154	-	92	85.857	Erinaceus_europaeus
ENSTRUG00000012320	polr2a	81	93.260	ENSELUG00000014284	polr2a	80	93.260	Esox_lucius
ENSTRUG00000012320	polr2a	81	88.648	ENSFDAG00000008287	-	99	88.662	Fukomys_damarensis
ENSTRUG00000012320	polr2a	81	92.250	ENSFHEG00000001768	polr2a	99	92.250	Fundulus_heteroclitus
ENSTRUG00000012320	polr2a	81	87.742	ENSGMOG00000007725	polr2a	99	87.659	Gadus_morhua
ENSTRUG00000012320	polr2a	81	92.312	ENSGAFG00000005389	polr2a	97	92.312	Gambusia_affinis
ENSTRUG00000012320	polr2a	81	73.409	ENSGACG00000019366	polr2a	99	88.317	Gasterosteus_aculeatus
ENSTRUG00000012320	polr2a	81	86.625	ENSGGOG00000014800	-	96	91.785	Gorilla_gorilla
ENSTRUG00000012320	polr2a	81	92.436	ENSHBUG00000018937	polr2a	98	90.473	Haplochromis_burtoni
ENSTRUG00000012320	polr2a	81	88.648	ENSHGLG00000012381	POLR2A	99	88.662	Heterocephalus_glaber_female
ENSTRUG00000012320	polr2a	81	88.648	ENSHGLG00100014843	POLR2A	99	88.662	Heterocephalus_glaber_male
ENSTRUG00000012320	polr2a	81	91.816	ENSHCOG00000011874	polr2a	98	91.816	Hippocampus_comes
ENSTRUG00000012320	polr2a	81	91.569	ENSIPUG00000002613	Polr2a	98	91.569	Ictalurus_punctatus
ENSTRUG00000012320	polr2a	81	88.586	ENSSTOG00000001304	-	99	88.600	Ictidomys_tridecemlineatus
ENSTRUG00000012320	polr2a	81	88.710	ENSJJAG00000013049	Polr2a	99	88.724	Jaculus_jaculus
ENSTRUG00000012320	polr2a	79	97.088	ENSKMAG00000016343	polr2a	85	97.088	Kryptolebias_marmoratus
ENSTRUG00000012320	polr2a	81	92.436	ENSLBEG00000027652	polr2a	98	92.511	Labrus_bergylta
ENSTRUG00000012320	polr2a	80	79.949	ENSLACG00000012071	POLR2A	98	79.962	Latimeria_chalumnae
ENSTRUG00000012320	polr2a	81	91.047	ENSLOCG00000013863	polr2a	99	90.695	Lepisosteus_oculatus
ENSTRUG00000012320	polr2a	81	88.586	ENSLAFG00000008626	-	99	88.600	Loxodonta_africana
ENSTRUG00000012320	polr2a	51	92.041	ENSMFAG00000007042	-	99	92.041	Macaca_fascicularis
ENSTRUG00000012320	polr2a	81	88.586	ENSMMUG00000023620	-	99	88.600	Macaca_mulatta
ENSTRUG00000012320	polr2a	81	88.586	ENSMNEG00000040407	-	99	88.600	Macaca_nemestrina
ENSTRUG00000012320	polr2a	80	85.495	ENSMLEG00000030263	-	99	92.041	Mandrillus_leucophaeus
ENSTRUG00000012320	polr2a	81	92.436	ENSMAMG00000003351	polr2a	98	92.436	Mastacembelus_armatus
ENSTRUG00000012320	polr2a	81	92.436	ENSMZEG00005021429	polr2a	98	92.511	Maylandia_zebra
ENSTRUG00000012320	polr2a	51	92.966	ENSMAUG00000021055	-	99	92.966	Mesocricetus_auratus
ENSTRUG00000012320	polr2a	81	88.524	ENSMICG00000013372	-	98	92.434	Microcebus_murinus
ENSTRUG00000012320	polr2a	81	84.421	ENSMOCG00000018279	Polr2a	93	84.416	Microtus_ochrogaster
ENSTRUG00000012320	polr2a	80	90.062	ENSMMOG00000012515	polr2a	95	86.467	Mola_mola
ENSTRUG00000012320	polr2a	81	88.337	ENSMODG00000007009	-	99	88.352	Monodelphis_domestica
ENSTRUG00000012320	polr2a	81	92.384	ENSMALG00000008716	polr2a	96	92.374	Monopterus_albus
ENSTRUG00000012320	polr2a	81	88.586	MGP_CAROLIEiJ_G0016587	Polr2a	99	88.600	Mus_caroli
ENSTRUG00000012320	polr2a	81	88.586	ENSMUSG00000005198	Polr2a	99	88.600	Mus_musculus
ENSTRUG00000012320	polr2a	81	86.919	MGP_PahariEiJ_G0017718	Polr2a	99	86.935	Mus_pahari
ENSTRUG00000012320	polr2a	81	88.586	MGP_SPRETEiJ_G0017423	Polr2a	99	88.600	Mus_spretus
ENSTRUG00000012320	polr2a	81	88.586	ENSMPUG00000009648	-	99	88.600	Mustela_putorius_furo
ENSTRUG00000012320	polr2a	81	88.104	ENSMLUG00000009088	-	99	88.119	Myotis_lucifugus
ENSTRUG00000012320	polr2a	81	88.586	ENSNGAG00000002543	Polr2a	99	88.600	Nannospalax_galili
ENSTRUG00000012320	polr2a	81	90.006	ENSNBRG00000002005	polr2a	98	90.781	Neolamprologus_brichardi
ENSTRUG00000012320	polr2a	81	87.245	ENSNLEG00000009460	-	99	87.260	Nomascus_leucogenys
ENSTRUG00000012320	polr2a	73	94.124	ENSMEUG00000008611	-	88	94.124	Notamacropus_eugenii
ENSTRUG00000012320	polr2a	79	88.615	ENSOPRG00000015116	-	99	88.615	Ochotona_princeps
ENSTRUG00000012320	polr2a	81	87.558	ENSODEG00000017674	-	99	84.110	Octodon_degus
ENSTRUG00000012320	polr2a	81	92.818	ENSONIG00000009231	polr2a	98	92.818	Oreochromis_niloticus
ENSTRUG00000012320	polr2a	81	87.592	ENSOCUG00000017929	-	98	87.454	Oryctolagus_cuniculus
ENSTRUG00000012320	polr2a	81	92.002	ENSORLG00000006431	polr2a	98	92.002	Oryzias_latipes
ENSTRUG00000012320	polr2a	81	92.002	ENSORLG00020010235	polr2a	98	92.002	Oryzias_latipes_hni
ENSTRUG00000012320	polr2a	81	91.940	ENSORLG00015007075	polr2a	98	91.940	Oryzias_latipes_hsok
ENSTRUG00000012320	polr2a	80	97.319	ENSOMEG00000010713	polr2a	94	97.319	Oryzias_melastigma
ENSTRUG00000012320	polr2a	81	88.586	ENSOGAG00000033608	-	99	88.600	Otolemur_garnettii
ENSTRUG00000012320	polr2a	80	88.586	ENSOARG00000013874	-	99	88.600	Ovis_aries
ENSTRUG00000012320	polr2a	81	86.375	ENSPPAG00000043734	-	98	86.104	Pan_paniscus
ENSTRUG00000012320	polr2a	81	87.245	ENSPTRG00000008691	POLR2A	99	87.260	Pan_troglodytes
ENSTRUG00000012320	polr2a	81	87.903	ENSPANG00000024099	-	99	87.918	Papio_anubis
ENSTRUG00000012320	polr2a	79	91.242	ENSPKIG00000005727	polr2a	83	90.851	Paramormyrops_kingsleyae
ENSTRUG00000012320	polr2a	81	86.027	ENSPSIG00000014006	POLR2A	98	87.113	Pelodiscus_sinensis
ENSTRUG00000012320	polr2a	81	89.400	ENSPMGG00000019734	polr2a	99	92.228	Periophthalmus_magnuspinnatus
ENSTRUG00000012320	polr2a	81	88.586	ENSPEMG00000012521	Polr2a	99	88.600	Peromyscus_maniculatus_bairdii
ENSTRUG00000012320	polr2a	80	73.443	ENSPCIG00000028851	-	82	73.110	Phascolarctos_cinereus
ENSTRUG00000012320	polr2a	81	92.374	ENSPFOG00000007890	polr2a	99	92.374	Poecilia_formosa
ENSTRUG00000012320	polr2a	81	92.374	ENSPLAG00000007399	polr2a	99	92.374	Poecilia_latipinna
ENSTRUG00000012320	polr2a	81	92.374	ENSPMEG00000002071	polr2a	99	92.374	Poecilia_mexicana
ENSTRUG00000012320	polr2a	81	92.312	ENSPREG00000013122	polr2a	98	92.312	Poecilia_reticulata
ENSTRUG00000012320	polr2a	81	88.586	ENSPPYG00000007924	-	98	88.600	Pongo_abelii
ENSTRUG00000012320	polr2a	73	94.087	ENSPCAG00000006951	-	91	94.087	Procavia_capensis
ENSTRUG00000012320	polr2a	81	87.339	ENSPCOG00000025260	-	99	87.354	Propithecus_coquereli
ENSTRUG00000012320	polr2a	81	88.509	ENSPVAG00000005069	-	99	88.524	Pteropus_vampyrus
ENSTRUG00000012320	polr2a	81	92.572	ENSPNYG00000022340	polr2a	98	92.572	Pundamilia_nyererei
ENSTRUG00000012320	polr2a	81	92.188	ENSPNAG00000011237	polr2a	98	92.188	Pygocentrus_nattereri
ENSTRUG00000012320	polr2a	81	88.524	ENSRNOG00000028834	Polr2a	99	88.538	Rattus_norvegicus
ENSTRUG00000012320	polr2a	80	88.330	ENSRBIG00000002471	-	99	86.600	Rhinopithecus_bieti
ENSTRUG00000012320	polr2a	81	88.586	ENSRROG00000029583	-	99	88.600	Rhinopithecus_roxellana
ENSTRUG00000012320	polr2a	80	48.377	YDL140C	RPO21	99	48.230	Saccharomyces_cerevisiae
ENSTRUG00000012320	polr2a	81	88.586	ENSSBOG00000000808	-	99	88.600	Saimiri_boliviensis_boliviensis
ENSTRUG00000012320	polr2a	81	88.337	ENSSHAG00000002858	-	99	88.352	Sarcophilus_harrisii
ENSTRUG00000012320	polr2a	81	91.507	ENSSFOG00015023275	polr2a	98	91.507	Scleropages_formosus
ENSTRUG00000012320	polr2a	81	91.878	ENSSMAG00000009137	polr2a	98	91.878	Scophthalmus_maximus
ENSTRUG00000012320	polr2a	81	92.940	ENSSDUG00000020466	polr2a	98	92.940	Seriola_dumerili
ENSTRUG00000012320	polr2a	81	92.879	ENSSLDG00000020613	polr2a	98	92.879	Seriola_lalandi_dorsalis
ENSTRUG00000012320	polr2a	80	85.245	ENSSARG00000005875	-	96	85.263	Sorex_araneus
ENSTRUG00000012320	polr2a	81	91.734	ENSSPAG00000016741	polr2a	92	88.010	Stegastes_partitus
ENSTRUG00000012320	polr2a	81	87.655	ENSSSCG00000028278	-	99	87.670	Sus_scrofa
ENSTRUG00000012320	polr2a	81	78.645	ENSTNIG00000010136	polr2a	99	78.645	Tetraodon_nigroviridis
ENSTRUG00000012320	polr2a	56	96.970	ENSTBEG00000013294	-	53	96.970	Tupaia_belangeri
ENSTRUG00000012320	polr2a	81	87.197	ENSTTRG00000014273	-	99	87.213	Tursiops_truncatus
ENSTRUG00000012320	polr2a	81	88.181	ENSUAMG00000014866	-	99	85.705	Ursus_americanus
ENSTRUG00000012320	polr2a	74	89.444	ENSUMAG00000015732	-	98	89.444	Ursus_maritimus
ENSTRUG00000012320	polr2a	81	88.524	ENSVVUG00000027878	-	99	88.538	Vulpes_vulpes
ENSTRUG00000012320	polr2a	80	88.302	ENSXETG00000012465	polr2a	99	88.317	Xenopus_tropicalis
ENSTRUG00000012320	polr2a	81	89.385	ENSXCOG00000001804	polr2a	98	90.130	Xiphophorus_couchianus
ENSTRUG00000012320	polr2a	81	92.250	ENSXMAG00000015687	polr2a	98	92.250	Xiphophorus_maculatus