EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000012432 (Gene tree)
Gene ID: 101070680
Gene Symbol: -
Alias: -
Full Name: probable ATP-dependent RNA helicase ddx6
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 8190 bases
Position: chr12:7477638-7485827
Accession: 101070680
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000031482	DEAD	PF00270.29	1.3e-40	1	1
ENSTRUP00000052392	DEAD	PF00270.29	1.5e-40	1	1
ENSTRUP00000054331	DEAD	PF00270.29	1.5e-40	1	1
ENSTRUP00000056299	DEAD	PF00270.29	1.5e-40	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000050974	-	4976	-	ENSTRUP00000054331	489 (aa)	-	UPI000298A98B
ENSTRUT00000031605	-	1368	-	ENSTRUP00000031482	455 (aa)	-	H2U3H1
ENSTRUT00000053814	-	4875	XM_011609330	ENSTRUP00000052392	489 (aa)	XP_011607632	UPI000298A98B
ENSTRUT00000049988	-	4905	XM_003969230	ENSTRUP00000056299	489 (aa)	XP_003969279	UPI000298A98B

Gene Model

Click here to download ENSTRUG00000012432's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000012432's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000012432	-	97	80.000	ENSTRUG00000011848	ddx6	99	79.588
ENSTRUG00000012432	-	81	35.088	ENSTRUG00000022930	DDX39A	93	35.088
ENSTRUG00000012432	-	71	31.921	ENSTRUG00000012795	ddx43	51	31.921
ENSTRUG00000012432	-	77	32.283	ENSTRUG00000021826	ddx47	80	32.283
ENSTRUG00000012432	-	73	35.753	ENSTRUG00000009474	ddx19	82	35.753
ENSTRUG00000012432	-	75	41.351	ENSTRUG00000002188	EIF4A1	80	41.351
ENSTRUG00000012432	-	77	36.772	ENSTRUG00000011543	eif4a3	92	36.772
ENSTRUG00000012432	-	74	31.472	ENSTRUG00000014001	-	61	31.472
ENSTRUG00000012432	-	70	38.983	ENSTRUG00000015765	ddx1	58	38.983
ENSTRUG00000012432	-	67	32.153	ENSTRUG00000021931	si:dkey-156n14.5	53	32.153
ENSTRUG00000012432	-	73	30.469	ENSTRUG00000018525	ddx55	64	30.469
ENSTRUG00000012432	-	75	39.516	ENSTRUG00000022264	eif4a2	91	39.516
ENSTRUG00000012432	-	73	30.585	ENSTRUG00000009308	ddx5	61	30.997
ENSTRUG00000012432	-	65	31.611	ENSTRUG00000005649	ddx18	51	31.611
ENSTRUG00000012432	-	79	31.061	ENSTRUG00000021524	ddx49	83	31.061
ENSTRUG00000012432	-	76	36.528	ENSTRUG00000019985	-	91	36.528
ENSTRUG00000012432	-	67	32.743	ENSTRUG00000009294	-	72	31.333
ENSTRUG00000012432	-	74	33.079	ENSTRUG00000000455	ddx23	52	32.570
ENSTRUG00000012432	-	71	34.247	ENSTRUG00000005966	zgc:193690	75	34.247
ENSTRUG00000012432	-	79	34.091	ENSTRUG00000023712	ddx20	51	34.091
ENSTRUG00000012432	-	78	30.244	ENSTRUG00000003862	-	56	30.244
ENSTRUG00000012432	-	74	30.894	ENSTRUG00000002089	ddx27	52	30.894
ENSTRUG00000012432	-	75	30.208	ENSTRUG00000002356	DDX5	61	30.208

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000012432	-	76	95.187	ENSAPOG00000023627	-	95	95.187	Acanthochromis_polyacanthus
ENSTRUG00000012432	-	99	84.221	ENSAPOG00000014829	ddx61	99	84.221	Acanthochromis_polyacanthus
ENSTRUG00000012432	-	99	89.648	ENSACIG00000018355	-	99	89.648	Amphilophus_citrinellus
ENSTRUG00000012432	-	99	91.803	ENSAOCG00000006269	-	99	91.803	Amphiprion_ocellaris
ENSTRUG00000012432	-	99	84.836	ENSAOCG00000007627	ddx61	99	84.836	Amphiprion_ocellaris
ENSTRUG00000012432	-	99	91.803	ENSAPEG00000020642	-	99	91.803	Amphiprion_percula
ENSTRUG00000012432	-	99	91.803	ENSAPEG00000021368	-	99	91.803	Amphiprion_percula
ENSTRUG00000012432	-	99	84.836	ENSAPEG00000007293	ddx61	99	84.836	Amphiprion_percula
ENSTRUG00000012432	-	99	89.754	ENSATEG00000005424	-	99	89.754	Anabas_testudineus
ENSTRUG00000012432	-	97	86.047	ENSATEG00000011302	ddx61	99	85.563	Anabas_testudineus
ENSTRUG00000012432	-	99	90.369	ENSACLG00000003260	-	99	90.369	Astatotilapia_calliptera
ENSTRUG00000012432	-	98	85.300	ENSACLG00000027620	ddx61	99	83.469	Astatotilapia_calliptera
ENSTRUG00000012432	-	97	85.895	ENSAMXG00000032542	ddx61	100	84.146	Astyanax_mexicanus
ENSTRUG00000012432	-	98	85.950	ENSAMXG00000033980	-	98	85.950	Astyanax_mexicanus
ENSTRUG00000012432	-	99	91.189	ENSCSEG00000009893	-	99	91.189	Cynoglossus_semilaevis
ENSTRUG00000012432	-	99	88.730	ENSCVAG00000011006	-	99	88.730	Cyprinodon_variegatus
ENSTRUG00000012432	-	99	83.778	ENSDARG00000018425	ddx61	99	83.778	Danio_rerio
ENSTRUG00000012432	-	98	87.552	ENSELUG00000020545	ddx61	99	87.552	Esox_lucius
ENSTRUG00000012432	-	99	88.367	ENSELUG00000022538	-	99	86.922	Esox_lucius
ENSTRUG00000012432	-	99	88.320	ENSFHEG00000015487	-	99	87.500	Fundulus_heteroclitus
ENSTRUG00000012432	-	96	87.342	ENSGMOG00000013762	ddx61	99	86.583	Gadus_morhua
ENSTRUG00000012432	-	71	85.933	ENSGMOG00000003561	-	100	85.714	Gadus_morhua
ENSTRUG00000012432	-	99	86.815	ENSGAFG00000015865	-	99	86.299	Gambusia_affinis
ENSTRUG00000012432	-	99	92.133	ENSGACG00000002413	-	100	92.133	Gasterosteus_aculeatus
ENSTRUG00000012432	-	97	83.162	ENSGACG00000003401	ddx61	99	83.230	Gasterosteus_aculeatus
ENSTRUG00000012432	-	98	85.300	ENSHBUG00000017832	ddx61	99	83.469	Haplochromis_burtoni
ENSTRUG00000012432	-	99	90.369	ENSHBUG00000017033	-	99	90.369	Haplochromis_burtoni
ENSTRUG00000012432	-	97	82.839	ENSHCOG00000008184	ddx61	97	82.627	Hippocampus_comes
ENSTRUG00000012432	-	99	88.090	ENSHCOG00000012238	-	99	88.090	Hippocampus_comes
ENSTRUG00000012432	-	97	85.625	ENSIPUG00000008367	-	99	86.013	Ictalurus_punctatus
ENSTRUG00000012432	-	96	83.940	ENSIPUG00000012823	DDX6	99	82.195	Ictalurus_punctatus
ENSTRUG00000012432	-	99	90.779	ENSKMAG00000007213	-	99	90.779	Kryptolebias_marmoratus
ENSTRUG00000012432	-	97	85.895	ENSLBEG00000001740	ddx61	98	85.895	Labrus_bergylta
ENSTRUG00000012432	-	99	90.909	ENSLBEG00000016890	-	99	90.707	Labrus_bergylta
ENSTRUG00000012432	-	97	81.520	ENSLACG00000015214	ddx61	100	80.698	Latimeria_chalumnae
ENSTRUG00000012432	-	75	79.688	ENSLOCG00000004352	ddx61	94	50.114	Lepisosteus_oculatus
ENSTRUG00000012432	-	99	91.207	ENSMAMG00000005559	-	99	91.207	Mastacembelus_armatus
ENSTRUG00000012432	-	97	85.835	ENSMAMG00000005321	ddx61	97	85.835	Mastacembelus_armatus
ENSTRUG00000012432	-	98	85.300	ENSMZEG00005003556	ddx61	99	83.469	Maylandia_zebra
ENSTRUG00000012432	-	99	90.369	ENSMZEG00005026268	-	99	90.369	Maylandia_zebra
ENSTRUG00000012432	-	96	84.829	ENSMMOG00000007415	ddx61	96	84.000	Mola_mola
ENSTRUG00000012432	-	99	84.836	ENSMMOG00000013694	-	99	84.836	Mola_mola
ENSTRUG00000012432	-	72	76.204	ENSMMOG00000008825	-	99	71.105	Mola_mola
ENSTRUG00000012432	-	99	89.754	ENSMALG00000013817	-	99	89.754	Monopterus_albus
ENSTRUG00000012432	-	97	80.449	ENSMALG00000013776	ddx61	96	80.449	Monopterus_albus
ENSTRUG00000012432	-	99	89.868	ENSNBRG00000015075	-	99	89.868	Neolamprologus_brichardi
ENSTRUG00000012432	-	97	84.270	ENSNBRG00000015800	ddx61	99	82.301	Neolamprologus_brichardi
ENSTRUG00000012432	-	98	85.177	ENSONIG00000011418	ddx61	99	83.333	Oreochromis_niloticus
ENSTRUG00000012432	-	99	90.369	ENSONIG00000013748	-	99	90.369	Oreochromis_niloticus
ENSTRUG00000012432	-	99	89.139	ENSORLG00000009178	-	99	89.139	Oryzias_latipes
ENSTRUG00000012432	-	99	89.139	ENSORLG00020015515	-	99	89.139	Oryzias_latipes_hni
ENSTRUG00000012432	-	99	88.934	ENSORLG00015006764	-	99	88.934	Oryzias_latipes_hsok
ENSTRUG00000012432	-	97	81.568	ENSOMEG00000022326	-	99	81.568	Oryzias_melastigma
ENSTRUG00000012432	-	97	87.815	ENSPKIG00000024264	ddx61	99	86.299	Paramormyrops_kingsleyae
ENSTRUG00000012432	-	98	89.709	ENSPMGG00000013355	-	99	89.262	Periophthalmus_magnuspinnatus
ENSTRUG00000012432	-	99	87.398	ENSPFOG00000005750	-	99	86.885	Poecilia_formosa
ENSTRUG00000012432	-	99	87.398	ENSPLAG00000000403	-	99	86.885	Poecilia_latipinna
ENSTRUG00000012432	-	99	87.195	ENSPMEG00000023737	-	99	86.680	Poecilia_mexicana
ENSTRUG00000012432	-	98	79.231	ENSPNYG00000015045	ddx61	99	77.609	Pundamilia_nyererei
ENSTRUG00000012432	-	99	90.369	ENSPNYG00000003986	-	99	90.369	Pundamilia_nyererei
ENSTRUG00000012432	-	97	84.792	ENSPNAG00000024072	ddx61	99	84.792	Pygocentrus_nattereri
ENSTRUG00000012432	-	99	86.762	ENSPNAG00000008742	-	100	86.762	Pygocentrus_nattereri
ENSTRUG00000012432	-	96	87.553	ENSSFOG00015021404	ddx61	99	85.918	Scleropages_formosus
ENSTRUG00000012432	-	96	86.752	ENSSMAG00000006591	ddx61	97	86.047	Scophthalmus_maximus
ENSTRUG00000012432	-	99	91.376	ENSSMAG00000001793	-	99	91.189	Scophthalmus_maximus
ENSTRUG00000012432	-	99	92.229	ENSSDUG00000007530	-	99	92.229	Seriola_dumerili
ENSTRUG00000012432	-	96	88.248	ENSSDUG00000009713	ddx61	97	87.526	Seriola_dumerili
ENSTRUG00000012432	-	99	92.229	ENSSLDG00000007608	-	99	92.229	Seriola_lalandi_dorsalis
ENSTRUG00000012432	-	96	88.248	ENSSLDG00000000132	ddx61	97	87.526	Seriola_lalandi_dorsalis
ENSTRUG00000012432	-	96	87.152	ENSSPAG00000001578	ddx61	98	85.744	Stegastes_partitus
ENSTRUG00000012432	-	99	91.393	ENSSPAG00000013878	-	99	91.393	Stegastes_partitus
ENSTRUG00000012432	-	98	95.625	ENSTNIG00000003560	-	100	95.625	Tetraodon_nigroviridis
ENSTRUG00000012432	-	99	78.296	ENSXCOG00000001406	-	99	77.710	Xiphophorus_couchianus
ENSTRUG00000012432	-	99	87.018	ENSXMAG00000016090	-	99	86.503	Xiphophorus_maculatus