EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000012580 (Gene tree)
Gene ID: 101065130
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 13875 bases
Position: chr7:1580821-1594695
Accession: 101065130
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000031847	EST1	PF10374.9	2.9e-24	1	1
ENSTRUP00000031846	EST1	PF10374.9	3.3e-24	1	1
ENSTRUP00000031847	EST1_DNA_bind	PF10373.9	1.6e-42	1	1
ENSTRUP00000031846	EST1_DNA_bind	PF10373.9	3.8e-41	1	1
ENSTRUP00000031847	PIN_4	PF13638.6	1.5e-06	1	1
ENSTRUP00000031846	PIN_4	PF13638.6	3.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000031970	-	3066	-	ENSTRUP00000031847	1021 (aa)	-	H2U4I5
ENSTRUT00000031969	-	5241	XM_003965642	ENSTRUP00000031846	1118 (aa)	XP_003965691	H2U4I4

Gene Model

Click here to download ENSTRUG00000012580's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000012580's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000012580	smg5	99	64.575	ENSG00000198952	SMG5	99	64.768	Homo_sapiens
ENSTRUG00000012580	smg5	100	82.743	ENSAPOG00000019690	smg5	100	83.009	Acanthochromis_polyacanthus
ENSTRUG00000012580	smg5	98	62.930	ENSAMEG00000014458	SMG5	100	62.734	Ailuropoda_melanoleuca
ENSTRUG00000012580	smg5	99	78.883	ENSACIG00000001353	smg5	99	79.545	Amphilophus_citrinellus
ENSTRUG00000012580	smg5	100	82.832	ENSAOCG00000019483	smg5	100	82.478	Amphiprion_ocellaris
ENSTRUG00000012580	smg5	100	82.920	ENSAPEG00000022949	smg5	100	82.566	Amphiprion_percula
ENSTRUG00000012580	smg5	100	81.272	ENSATEG00000005348	smg5	100	81.714	Anabas_testudineus
ENSTRUG00000012580	smg5	98	64.841	ENSAPLG00000010263	SMG5	100	64.189	Anas_platyrhynchos
ENSTRUG00000012580	smg5	99	64.575	ENSANAG00000032899	SMG5	99	65.058	Aotus_nancymaae
ENSTRUG00000012580	smg5	100	79.189	ENSACLG00000009311	smg5	100	79.718	Astatotilapia_calliptera
ENSTRUG00000012580	smg5	100	74.581	ENSAMXG00000024616	smg5	100	74.182	Astyanax_mexicanus
ENSTRUG00000012580	smg5	99	38.926	ENSBTAG00000021747	-	93	49.386	Bos_taurus
ENSTRUG00000012580	smg5	99	63.900	ENSBTAG00000009435	SMG5	99	64.609	Bos_taurus
ENSTRUG00000012580	smg5	99	64.575	ENSCJAG00000005684	SMG5	99	65.076	Callithrix_jacchus
ENSTRUG00000012580	smg5	92	75.410	ENSCAFG00000016839	SMG5	99	63.830	Canis_familiaris
ENSTRUG00000012580	smg5	92	75.410	ENSCAFG00020006061	SMG5	99	63.830	Canis_lupus_dingo
ENSTRUG00000012580	smg5	99	64.093	ENSCHIG00000007709	SMG5	99	64.417	Capra_hircus
ENSTRUG00000012580	smg5	99	39.441	ENSCHIG00000006323	-	93	50.758	Capra_hircus
ENSTRUG00000012580	smg5	99	64.451	ENSTSYG00000004099	SMG5	99	63.584	Carlito_syrichta
ENSTRUG00000012580	smg5	95	49.643	ENSCAPG00000003631	SMG5	100	50.256	Cavia_aperea
ENSTRUG00000012580	smg5	99	64.547	ENSCPOG00000015696	SMG5	99	65.222	Cavia_porcellus
ENSTRUG00000012580	smg5	99	64.286	ENSCCAG00000027409	SMG5	99	64.768	Cebus_capucinus
ENSTRUG00000012580	smg5	99	64.575	ENSCATG00000030539	SMG5	99	63.775	Cercocebus_atys
ENSTRUG00000012580	smg5	99	64.547	ENSCLAG00000003983	SMG5	99	64.034	Chinchilla_lanigera
ENSTRUG00000012580	smg5	99	64.575	ENSCSAG00000002120	SMG5	99	63.775	Chlorocebus_sabaeus
ENSTRUG00000012580	smg5	53	73.646	ENSCHOG00000008741	-	57	73.646	Choloepus_hoffmanni
ENSTRUG00000012580	smg5	94	64.121	ENSCPBG00000025848	SMG5	100	64.464	Chrysemys_picta_bellii
ENSTRUG00000012580	smg5	92	33.300	ENSCING00000008706	-	98	33.300	Ciona_intestinalis
ENSTRUG00000012580	smg5	99	61.776	ENSCANG00000029208	SMG5	99	62.548	Colobus_angolensis_palliatus
ENSTRUG00000012580	smg5	99	64.990	ENSCGRG00001006336	Smg5	99	64.860	Cricetulus_griseus_chok1gshd
ENSTRUG00000012580	smg5	98	64.961	ENSCGRG00000005111	Smg5	100	64.793	Cricetulus_griseus_crigri
ENSTRUG00000012580	smg5	100	77.926	ENSCSEG00000014220	smg5	100	77.926	Cynoglossus_semilaevis
ENSTRUG00000012580	smg5	100	72.254	ENSCVAG00000000529	smg5	100	71.896	Cyprinodon_variegatus
ENSTRUG00000012580	smg5	100	74.182	ENSDARG00000041481	smg5	100	74.779	Danio_rerio
ENSTRUG00000012580	smg5	91	32.424	ENSDNOG00000039862	-	95	38.005	Dasypus_novemcinctus
ENSTRUG00000012580	smg5	99	62.042	ENSDNOG00000000051	SMG5	99	62.368	Dasypus_novemcinctus
ENSTRUG00000012580	smg5	99	64.196	ENSDORG00000010382	Smg5	99	65.063	Dipodomys_ordii
ENSTRUG00000012580	smg5	76	84.466	ENSETEG00000010336	SMG5	84	84.466	Echinops_telfairi
ENSTRUG00000012580	smg5	91	45.291	ENSEBUG00000003739	smg5	96	52.812	Eptatretus_burgeri
ENSTRUG00000012580	smg5	99	64.162	ENSEASG00005019122	SMG5	99	64.382	Equus_asinus_asinus
ENSTRUG00000012580	smg5	99	64.258	ENSECAG00000001389	SMG5	99	64.286	Equus_caballus
ENSTRUG00000012580	smg5	71	77.810	ENSEEUG00000012690	SMG5	75	77.810	Erinaceus_europaeus
ENSTRUG00000012580	smg5	100	76.393	ENSELUG00000012585	smg5	100	76.393	Esox_lucius
ENSTRUG00000012580	smg5	92	75.352	ENSFCAG00000011783	SMG5	99	62.813	Felis_catus
ENSTRUG00000012580	smg5	58	65.404	ENSFALG00000001166	-	97	64.298	Ficedula_albicollis
ENSTRUG00000012580	smg5	98	63.867	ENSFDAG00000017388	SMG5	100	63.460	Fukomys_damarensis
ENSTRUG00000012580	smg5	86	86.709	ENSFHEG00000013939	smg5	95	86.709	Fundulus_heteroclitus
ENSTRUG00000012580	smg5	100	73.890	ENSGMOG00000007310	smg5	100	75.044	Gadus_morhua
ENSTRUG00000012580	smg5	99	65.370	ENSGALG00000029918	-	100	64.218	Gallus_gallus
ENSTRUG00000012580	smg5	93	86.624	ENSGAFG00000021691	smg5	99	86.624	Gambusia_affinis
ENSTRUG00000012580	smg5	100	79.982	ENSGACG00000013142	smg5	100	79.894	Gasterosteus_aculeatus
ENSTRUG00000012580	smg5	99	64.773	ENSGAGG00000016131	SMG5	99	64.144	Gopherus_agassizii
ENSTRUG00000012580	smg5	92	75.581	ENSGGOG00000010932	SMG5	99	64.575	Gorilla_gorilla
ENSTRUG00000012580	smg5	100	78.994	ENSHBUG00000008654	smg5	100	80.053	Haplochromis_burtoni
ENSTRUG00000012580	smg5	99	63.305	ENSHGLG00000019152	SMG5	99	63.908	Heterocephalus_glaber_female
ENSTRUG00000012580	smg5	89	64.309	ENSHGLG00100015948	SMG5	99	64.984	Heterocephalus_glaber_male
ENSTRUG00000012580	smg5	86	80.397	ENSHCOG00000010229	smg5	93	80.605	Hippocampus_comes
ENSTRUG00000012580	smg5	100	72.566	ENSIPUG00000006624	Smg5	100	71.858	Ictalurus_punctatus
ENSTRUG00000012580	smg5	99	64.479	ENSSTOG00000001780	SMG5	99	64.054	Ictidomys_tridecemlineatus
ENSTRUG00000012580	smg5	99	64.451	ENSJJAG00000022763	Smg5	99	63.878	Jaculus_jaculus
ENSTRUG00000012580	smg5	100	79.576	ENSKMAG00000014586	smg5	100	80.053	Kryptolebias_marmoratus
ENSTRUG00000012580	smg5	100	80.514	ENSLBEG00000002145	smg5	100	81.045	Labrus_bergylta
ENSTRUG00000012580	smg5	99	58.585	ENSLACG00000010521	SMG5	99	58.483	Latimeria_chalumnae
ENSTRUG00000012580	smg5	91	82.898	ENSLOCG00000008380	smg5	99	69.345	Lepisosteus_oculatus
ENSTRUG00000012580	smg5	100	63.401	ENSLAFG00000006241	SMG5	100	63.593	Loxodonta_africana
ENSTRUG00000012580	smg5	99	64.575	ENSMFAG00000045357	SMG5	99	63.775	Macaca_fascicularis
ENSTRUG00000012580	smg5	99	64.479	ENSMMUG00000000090	SMG5	99	64.513	Macaca_mulatta
ENSTRUG00000012580	smg5	99	64.479	ENSMNEG00000044425	SMG5	99	63.870	Macaca_nemestrina
ENSTRUG00000012580	smg5	99	59.231	ENSMLEG00000041192	SMG5	99	58.500	Mandrillus_leucophaeus
ENSTRUG00000012580	smg5	100	81.770	ENSMAMG00000010683	smg5	100	81.947	Mastacembelus_armatus
ENSTRUG00000012580	smg5	63	74.363	ENSMZEG00005016543	smg5	100	74.251	Maylandia_zebra
ENSTRUG00000012580	smg5	99	75.996	ENSMZEG00005015815	smg5	99	75.924	Maylandia_zebra
ENSTRUG00000012580	smg5	99	64.666	ENSMAUG00000010381	Smg5	99	64.860	Mesocricetus_auratus
ENSTRUG00000012580	smg5	92	76.347	ENSMICG00000002257	SMG5	93	75.406	Microcebus_murinus
ENSTRUG00000012580	smg5	99	63.830	ENSMOCG00000016590	Smg5	99	63.208	Microtus_ochrogaster
ENSTRUG00000012580	smg5	100	79.045	ENSMMOG00000017199	smg5	100	79.045	Mola_mola
ENSTRUG00000012580	smg5	86	64.706	ENSMODG00000016901	SMG5	90	74.194	Monodelphis_domestica
ENSTRUG00000012580	smg5	77	35.917	ENSMODG00000004532	-	85	35.917	Monodelphis_domestica
ENSTRUG00000012580	smg5	76	34.307	ENSMODG00000004735	-	96	33.333	Monodelphis_domestica
ENSTRUG00000012580	smg5	76	34.375	ENSMODG00000010675	-	88	34.375	Monodelphis_domestica
ENSTRUG00000012580	smg5	97	31.213	ENSMODG00000004511	-	92	34.694	Monodelphis_domestica
ENSTRUG00000012580	smg5	100	80.354	ENSMALG00000010375	smg5	100	79.735	Monopterus_albus
ENSTRUG00000012580	smg5	99	64.569	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSTRUG00000012580	smg5	99	64.666	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSTRUG00000012580	smg5	99	64.763	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSTRUG00000012580	smg5	99	64.472	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSTRUG00000012580	smg5	87	74.387	ENSMPUG00000004546	SMG5	100	61.837	Mustela_putorius_furo
ENSTRUG00000012580	smg5	99	64.519	ENSMLUG00000008518	SMG5	99	63.454	Myotis_lucifugus
ENSTRUG00000012580	smg5	99	36.959	ENSNGAG00000012101	-	94	48.551	Nannospalax_galili
ENSTRUG00000012580	smg5	99	64.791	ENSNGAG00000020706	Smg5	99	64.985	Nannospalax_galili
ENSTRUG00000012580	smg5	97	75.646	ENSNBRG00000004332	smg5	99	76.143	Neolamprologus_brichardi
ENSTRUG00000012580	smg5	99	64.382	ENSNLEG00000012439	SMG5	99	64.479	Nomascus_leucogenys
ENSTRUG00000012580	smg5	99	62.899	ENSMEUG00000012834	SMG5	99	63.285	Notamacropus_eugenii
ENSTRUG00000012580	smg5	99	63.873	ENSOPRG00000009152	SMG5	99	64.575	Ochotona_princeps
ENSTRUG00000012580	smg5	99	65.154	ENSODEG00000012237	SMG5	94	74.424	Octodon_degus
ENSTRUG00000012580	smg5	100	79.700	ENSONIG00000008632	smg5	100	80.141	Oreochromis_niloticus
ENSTRUG00000012580	smg5	89	36.645	ENSOCUG00000023338	-	92	45.455	Oryctolagus_cuniculus
ENSTRUG00000012580	smg5	98	64.012	ENSOCUG00000012886	SMG5	100	64.828	Oryctolagus_cuniculus
ENSTRUG00000012580	smg5	100	78.133	ENSORLG00000016239	smg5	100	78.142	Oryzias_latipes
ENSTRUG00000012580	smg5	100	78.737	ENSORLG00020013127	smg5	100	78.388	Oryzias_latipes_hni
ENSTRUG00000012580	smg5	100	78.559	ENSORLG00015019014	smg5	100	78.388	Oryzias_latipes_hsok
ENSTRUG00000012580	smg5	84	76.850	ENSOMEG00000021330	smg5	93	78.208	Oryzias_melastigma
ENSTRUG00000012580	smg5	92	75.294	ENSOGAG00000004966	SMG5	99	64.376	Otolemur_garnettii
ENSTRUG00000012580	smg5	99	63.900	ENSOARG00000005778	SMG5	99	64.417	Ovis_aries
ENSTRUG00000012580	smg5	99	40.696	ENSOARG00000011963	-	93	50.739	Ovis_aries
ENSTRUG00000012580	smg5	99	64.575	ENSPPAG00000011996	SMG5	99	64.672	Pan_paniscus
ENSTRUG00000012580	smg5	91	76.098	ENSPPRG00000011901	SMG5	100	62.512	Panthera_pardus
ENSTRUG00000012580	smg5	97	59.880	ENSPTIG00000007892	SMG5	98	59.919	Panthera_tigris_altaica
ENSTRUG00000012580	smg5	87	77.586	ENSPTRG00000049282	-	99	64.672	Pan_troglodytes
ENSTRUG00000012580	smg5	99	64.575	ENSPTRG00000023925	SMG5	99	64.672	Pan_troglodytes
ENSTRUG00000012580	smg5	99	64.575	ENSPANG00000011201	SMG5	99	63.775	Papio_anubis
ENSTRUG00000012580	smg5	100	73.708	ENSPKIG00000009402	smg5	100	73.108	Paramormyrops_kingsleyae
ENSTRUG00000012580	smg5	98	65.103	ENSPSIG00000015198	SMG5	100	64.985	Pelodiscus_sinensis
ENSTRUG00000012580	smg5	100	70.053	ENSPMGG00000010465	smg5	100	69.867	Periophthalmus_magnuspinnatus
ENSTRUG00000012580	smg5	99	64.472	ENSPEMG00000001819	Smg5	99	64.860	Peromyscus_maniculatus_bairdii
ENSTRUG00000012580	smg5	88	63.131	ENSPMAG00000000410	smg5	92	61.408	Petromyzon_marinus
ENSTRUG00000012580	smg5	99	64.078	ENSPCIG00000018938	SMG5	92	74.419	Phascolarctos_cinereus
ENSTRUG00000012580	smg5	100	79.344	ENSPFOG00000010191	smg5	100	79.451	Poecilia_formosa
ENSTRUG00000012580	smg5	100	79.769	ENSPLAG00000009332	smg5	100	79.344	Poecilia_latipinna
ENSTRUG00000012580	smg5	100	79.344	ENSPMEG00000014105	smg5	100	79.451	Poecilia_mexicana
ENSTRUG00000012580	smg5	100	78.863	ENSPREG00000017713	smg5	100	79.167	Poecilia_reticulata
ENSTRUG00000012580	smg5	99	64.768	ENSPPYG00000000723	SMG5	99	64.672	Pongo_abelii
ENSTRUG00000012580	smg5	75	79.444	ENSPCAG00000008412	SMG5	81	79.444	Procavia_capensis
ENSTRUG00000012580	smg5	92	75.878	ENSPCOG00000004741	SMG5	93	74.942	Propithecus_coquereli
ENSTRUG00000012580	smg5	99	57.707	ENSPVAG00000016748	SMG5	99	58.285	Pteropus_vampyrus
ENSTRUG00000012580	smg5	100	78.628	ENSPNYG00000013397	smg5	100	79.595	Pundamilia_nyererei
ENSTRUG00000012580	smg5	100	75.089	ENSPNAG00000028363	smg5	100	74.291	Pygocentrus_nattereri
ENSTRUG00000012580	smg5	99	64.348	ENSRNOG00000019590	Smg5	99	64.472	Rattus_norvegicus
ENSTRUG00000012580	smg5	99	64.382	ENSRBIG00000027428	SMG5	99	63.775	Rhinopithecus_bieti
ENSTRUG00000012580	smg5	99	64.479	ENSRROG00000030035	SMG5	99	63.680	Rhinopithecus_roxellana
ENSTRUG00000012580	smg5	99	64.575	ENSSBOG00000033339	SMG5	99	65.058	Saimiri_boliviensis_boliviensis
ENSTRUG00000012580	smg5	98	63.663	ENSSHAG00000014163	SMG5	100	63.663	Sarcophilus_harrisii
ENSTRUG00000012580	smg5	75	37.076	ENSSHAG00000000561	-	90	37.076	Sarcophilus_harrisii
ENSTRUG00000012580	smg5	54	37.859	ENSSHAG00000000935	-	81	37.280	Sarcophilus_harrisii
ENSTRUG00000012580	smg5	79	40.878	ENSSHAG00000009572	-	79	42.602	Sarcophilus_harrisii
ENSTRUG00000012580	smg5	99	75.912	ENSSFOG00015024175	smg5	99	75.096	Scleropages_formosus
ENSTRUG00000012580	smg5	100	81.311	ENSSMAG00000013059	smg5	100	81.665	Scophthalmus_maximus
ENSTRUG00000012580	smg5	100	82.332	ENSSDUG00000007122	smg5	100	82.597	Seriola_dumerili
ENSTRUG00000012580	smg5	100	81.890	ENSSLDG00000011418	smg5	100	82.244	Seriola_lalandi_dorsalis
ENSTRUG00000012580	smg5	89	57.282	ENSSARG00000012484	SMG5	99	57.929	Sorex_araneus
ENSTRUG00000012580	smg5	94	63.519	ENSSPUG00000002260	SMG5	100	63.809	Sphenodon_punctatus
ENSTRUG00000012580	smg5	100	81.714	ENSSPAG00000014266	smg5	100	82.244	Stegastes_partitus
ENSTRUG00000012580	smg5	99	51.074	ENSSSCG00000039308	-	99	47.059	Sus_scrofa
ENSTRUG00000012580	smg5	92	76.102	ENSSSCG00000006490	-	93	75.115	Sus_scrofa
ENSTRUG00000012580	smg5	99	65.863	ENSTGUG00000003748	-	99	65.385	Taeniopygia_guttata
ENSTRUG00000012580	smg5	100	92.075	ENSTNIG00000010303	smg5	100	92.164	Tetraodon_nigroviridis
ENSTRUG00000012580	smg5	58	83.744	ENSTBEG00000002777	SMG5	58	83.744	Tupaia_belangeri
ENSTRUG00000012580	smg5	93	69.816	ENSTTRG00000001401	SMG5	95	67.181	Tursiops_truncatus
ENSTRUG00000012580	smg5	92	74.413	ENSUAMG00000013721	SMG5	99	62.645	Ursus_americanus
ENSTRUG00000012580	smg5	91	72.749	ENSUMAG00000018041	SMG5	97	70.670	Ursus_maritimus
ENSTRUG00000012580	smg5	91	68.116	ENSVPAG00000009446	SMG5	93	65.777	Vicugna_pacos
ENSTRUG00000012580	smg5	99	63.698	ENSVVUG00000005887	SMG5	99	64.085	Vulpes_vulpes
ENSTRUG00000012580	smg5	77	56.740	ENSXETG00000033791	SMG5	99	54.969	Xenopus_tropicalis
ENSTRUG00000012580	smg5	92	89.247	ENSXCOG00000004379	smg5	100	89.247	Xiphophorus_couchianus
ENSTRUG00000012580	smg5	100	79.237	ENSXMAG00000013499	smg5	100	79.185	Xiphophorus_maculatus