EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000012730 (Gene tree)
Gene ID: -
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 3058 bases
Position: chr1:11282170-11285227
Accession: 101066409
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000032209	Smg4_UPF3	PF03467.15	2.1e-45	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000032333	-	1359	XM_011606986	ENSTRUP00000032209	452 (aa)	XP_011605288	H2U5J3

Gene Model

Click here to download ENSTRUG00000012730's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000012730's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000012730	upf3a	83	49.024	ENSTRUG00000010645	upf3b	90	49.180

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000012730	upf3a	91	54.626	ENSG00000169062	UPF3A	95	54.626	Homo_sapiens
ENSTRUG00000012730	upf3a	99	87.196	ENSAPOG00000013484	upf3a	98	87.196	Acanthochromis_polyacanthus
ENSTRUG00000012730	upf3a	85	50.583	ENSAPOG00000012775	upf3b	94	50.909	Acanthochromis_polyacanthus
ENSTRUG00000012730	upf3a	87	55.904	ENSAMEG00000004259	UPF3A	89	56.585	Ailuropoda_melanoleuca
ENSTRUG00000012730	upf3a	99	82.983	ENSACIG00000020468	upf3a	99	82.983	Amphilophus_citrinellus
ENSTRUG00000012730	upf3a	67	55.911	ENSAOCG00000000706	upf3b	94	44.860	Amphiprion_ocellaris
ENSTRUG00000012730	upf3a	99	87.033	ENSAOCG00000020784	upf3a	98	87.033	Amphiprion_ocellaris
ENSTRUG00000012730	upf3a	99	87.033	ENSAPEG00000003519	upf3a	98	87.033	Amphiprion_percula
ENSTRUG00000012730	upf3a	64	59.609	ENSAPEG00000005545	upf3b	94	49.886	Amphiprion_percula
ENSTRUG00000012730	upf3a	85	51.415	ENSATEG00000018742	upf3b	90	51.069	Anabas_testudineus
ENSTRUG00000012730	upf3a	99	85.055	ENSATEG00000005843	upf3a	100	84.449	Anabas_testudineus
ENSTRUG00000012730	upf3a	88	60.096	ENSACAG00000001540	UPF3A	98	60.732	Anolis_carolinensis
ENSTRUG00000012730	upf3a	86	50.119	ENSACAG00000003625	UPF3B	88	49.409	Anolis_carolinensis
ENSTRUG00000012730	upf3a	83	49.755	ENSANAG00000021894	-	97	58.768	Aotus_nancymaae
ENSTRUG00000012730	upf3a	84	42.857	ENSANAG00000025598	-	80	51.923	Aotus_nancymaae
ENSTRUG00000012730	upf3a	91	53.020	ENSANAG00000021713	UPF3A	92	53.020	Aotus_nancymaae
ENSTRUG00000012730	upf3a	99	84.144	ENSACLG00000026274	upf3a	98	84.144	Astatotilapia_calliptera
ENSTRUG00000012730	upf3a	99	79.341	ENSAMXG00000002608	upf3a	99	79.341	Astyanax_mexicanus
ENSTRUG00000012730	upf3a	83	49.755	ENSCJAG00000004975	UPF3B	93	58.500	Callithrix_jacchus
ENSTRUG00000012730	upf3a	91	54.628	ENSCJAG00000019102	UPF3A	97	53.664	Callithrix_jacchus
ENSTRUG00000012730	upf3a	92	52.735	ENSCAFG00000006504	UPF3A	98	52.484	Canis_familiaris
ENSTRUG00000012730	upf3a	83	49.268	ENSCAFG00000018426	UPF3B	86	48.910	Canis_familiaris
ENSTRUG00000012730	upf3a	92	52.516	ENSCAFG00020014268	UPF3A	96	52.268	Canis_lupus_dingo
ENSTRUG00000012730	upf3a	84	55.276	ENSCHIG00000008682	UPF3A	79	54.975	Capra_hircus
ENSTRUG00000012730	upf3a	83	48.049	ENSTSYG00000014690	UPF3B	76	60.000	Carlito_syrichta
ENSTRUG00000012730	upf3a	75	51.087	ENSTSYG00000001918	UPF3A	98	51.337	Carlito_syrichta
ENSTRUG00000012730	upf3a	72	58.309	ENSCPOG00000006824	UPF3A	79	58.601	Cavia_porcellus
ENSTRUG00000012730	upf3a	94	53.664	ENSCCAG00000018406	UPF3A	97	53.664	Cebus_capucinus
ENSTRUG00000012730	upf3a	94	55.286	ENSCATG00000029733	UPF3A	97	55.727	Cercocebus_atys
ENSTRUG00000012730	upf3a	94	54.803	ENSCSAG00000017388	UPF3A	97	55.677	Chlorocebus_sabaeus
ENSTRUG00000012730	upf3a	82	55.497	ENSCGRG00001017387	Upf3a	89	53.947	Cricetulus_griseus_chok1gshd
ENSTRUG00000012730	upf3a	81	48.756	ENSCGRG00000007627	Upf3b	95	46.651	Cricetulus_griseus_crigri
ENSTRUG00000012730	upf3a	82	55.497	ENSCGRG00000001468	Upf3a	89	53.947	Cricetulus_griseus_crigri
ENSTRUG00000012730	upf3a	81	52.500	ENSCSEG00000002046	upf3b	86	52.644	Cynoglossus_semilaevis
ENSTRUG00000012730	upf3a	99	84.061	ENSCSEG00000005106	upf3a	99	84.061	Cynoglossus_semilaevis
ENSTRUG00000012730	upf3a	100	80.603	ENSCVAG00000022333	upf3a	100	80.603	Cyprinodon_variegatus
ENSTRUG00000012730	upf3a	83	49.510	ENSCVAG00000005030	upf3b	90	49.038	Cyprinodon_variegatus
ENSTRUG00000012730	upf3a	99	77.412	ENSDARG00000069297	upf3a	99	77.412	Danio_rerio
ENSTRUG00000012730	upf3a	58	59.567	ENSDARG00000000489	upf3b	88	49.524	Danio_rerio
ENSTRUG00000012730	upf3a	85	57.178	ENSDNOG00000034391	UPF3A	93	57.178	Dasypus_novemcinctus
ENSTRUG00000012730	upf3a	91	49.663	ENSETEG00000010110	UPF3A	96	48.491	Echinops_telfairi
ENSTRUG00000012730	upf3a	83	47.202	ENSEASG00005012919	UPF3B	70	68.116	Equus_asinus_asinus
ENSTRUG00000012730	upf3a	91	53.795	ENSEASG00005021884	UPF3A	93	53.982	Equus_asinus_asinus
ENSTRUG00000012730	upf3a	83	47.202	ENSECAG00000016947	UPF3B	70	62.857	Equus_caballus
ENSTRUG00000012730	upf3a	99	77.922	ENSELUG00000011050	upf3a	99	77.922	Esox_lucius
ENSTRUG00000012730	upf3a	91	55.530	ENSFCAG00000014602	UPF3A	96	54.526	Felis_catus
ENSTRUG00000012730	upf3a	83	47.922	ENSFDAG00000018869	UPF3B	87	46.697	Fukomys_damarensis
ENSTRUG00000012730	upf3a	84	47.765	ENSFHEG00000017895	upf3b	90	48.276	Fundulus_heteroclitus
ENSTRUG00000012730	upf3a	70	74.545	ENSGMOG00000019615	upf3a	100	72.365	Gadus_morhua
ENSTRUG00000012730	upf3a	52	62.249	ENSGMOG00000001621	upf3b	88	47.971	Gadus_morhua
ENSTRUG00000012730	upf3a	100	80.819	ENSGAFG00000021170	upf3a	100	80.819	Gambusia_affinis
ENSTRUG00000012730	upf3a	50	63.485	ENSGAFG00000000829	upf3b	90	49.761	Gambusia_affinis
ENSTRUG00000012730	upf3a	51	64.228	ENSGACG00000017435	upf3b	90	44.131	Gasterosteus_aculeatus
ENSTRUG00000012730	upf3a	70	77.812	ENSGACG00000001972	upf3a	100	75.072	Gasterosteus_aculeatus
ENSTRUG00000012730	upf3a	85	46.963	ENSGAGG00000001219	UPF3B	86	49.755	Gopherus_agassizii
ENSTRUG00000012730	upf3a	91	55.405	ENSGGOG00000015428	UPF3A	95	55.180	Gorilla_gorilla
ENSTRUG00000012730	upf3a	82	47.409	ENSGGOG00000043074	-	81	46.791	Gorilla_gorilla
ENSTRUG00000012730	upf3a	85	45.250	ENSGGOG00000041219	-	85	46.791	Gorilla_gorilla
ENSTRUG00000012730	upf3a	99	87.473	ENSHBUG00000011325	upf3a	98	87.665	Haplochromis_burtoni
ENSTRUG00000012730	upf3a	83	49.052	ENSHBUG00000017393	upf3b	90	50.236	Haplochromis_burtoni
ENSTRUG00000012730	upf3a	76	55.801	ENSHGLG00000001544	UPF3A	87	54.987	Heterocephalus_glaber_female
ENSTRUG00000012730	upf3a	76	55.801	ENSHGLG00100013244	UPF3A	87	54.987	Heterocephalus_glaber_male
ENSTRUG00000012730	upf3a	94	76.606	ENSHCOG00000013985	upf3a	93	71.264	Hippocampus_comes
ENSTRUG00000012730	upf3a	85	52.427	ENSHCOG00000017004	upf3b	90	50.839	Hippocampus_comes
ENSTRUG00000012730	upf3a	84	48.931	ENSIPUG00000019249	upf3b	89	48.931	Ictalurus_punctatus
ENSTRUG00000012730	upf3a	99	78.070	ENSIPUG00000023450	upf3a	99	78.070	Ictalurus_punctatus
ENSTRUG00000012730	upf3a	99	83.772	ENSKMAG00000004381	upf3a	98	83.956	Kryptolebias_marmoratus
ENSTRUG00000012730	upf3a	85	48.926	ENSKMAG00000020300	upf3b	92	46.512	Kryptolebias_marmoratus
ENSTRUG00000012730	upf3a	99	79.780	ENSLBEG00000021570	upf3a	99	80.000	Labrus_bergylta
ENSTRUG00000012730	upf3a	61	41.349	ENSLACG00000006645	UPF3A	68	81.818	Latimeria_chalumnae
ENSTRUG00000012730	upf3a	51	66.667	ENSLOCG00000015238	upf3b	91	50.939	Lepisosteus_oculatus
ENSTRUG00000012730	upf3a	97	72.088	ENSLOCG00000002665	upf3a	98	72.088	Lepisosteus_oculatus
ENSTRUG00000012730	upf3a	83	47.433	ENSLAFG00000023358	UPF3A	95	46.731	Loxodonta_africana
ENSTRUG00000012730	upf3a	94	53.982	ENSMFAG00000045016	UPF3A	96	53.761	Macaca_fascicularis
ENSTRUG00000012730	upf3a	90	56.279	ENSMMUG00000007449	UPF3A	96	55.909	Macaca_mulatta
ENSTRUG00000012730	upf3a	83	59.221	ENSMNEG00000036402	UPF3A	80	59.585	Macaca_nemestrina
ENSTRUG00000012730	upf3a	83	59.067	ENSMLEG00000014726	UPF3A	90	59.067	Mandrillus_leucophaeus
ENSTRUG00000012730	upf3a	99	83.015	ENSMAMG00000018364	upf3a	100	82.463	Mastacembelus_armatus
ENSTRUG00000012730	upf3a	83	45.622	ENSMAMG00000020069	upf3b	93	46.320	Mastacembelus_armatus
ENSTRUG00000012730	upf3a	99	84.144	ENSMZEG00005021571	upf3a	98	84.144	Maylandia_zebra
ENSTRUG00000012730	upf3a	86	61.765	ENSMGAG00000014837	UPF3A	99	61.614	Meleagris_gallopavo
ENSTRUG00000012730	upf3a	58	66.065	ENSMOCG00000000550	Upf3a	57	66.337	Microtus_ochrogaster
ENSTRUG00000012730	upf3a	83	48.878	ENSMMOG00000004183	upf3b	92	48.951	Mola_mola
ENSTRUG00000012730	upf3a	100	82.121	ENSMMOG00000019751	upf3a	100	82.121	Mola_mola
ENSTRUG00000012730	upf3a	84	64.662	ENSMODG00000003159	UPF3A	95	64.059	Monodelphis_domestica
ENSTRUG00000012730	upf3a	82	48.931	ENSMODG00000010232	UPF3B	93	49.161	Monodelphis_domestica
ENSTRUG00000012730	upf3a	82	58.530	MGP_CAROLIEiJ_G0030848	Upf3a	89	58.530	Mus_caroli
ENSTRUG00000012730	upf3a	82	58.115	ENSMUSG00000038398	Upf3a	89	58.115	Mus_musculus
ENSTRUG00000012730	upf3a	82	58.639	MGP_PahariEiJ_G0021311	Upf3a	89	58.639	Mus_pahari
ENSTRUG00000012730	upf3a	82	57.592	MGP_SPRETEiJ_G0031958	Upf3a	89	57.592	Mus_spretus
ENSTRUG00000012730	upf3a	92	53.611	ENSMPUG00000009139	UPF3A	94	53.611	Mustela_putorius_furo
ENSTRUG00000012730	upf3a	83	48.780	ENSMPUG00000001531	UPF3B	86	49.015	Mustela_putorius_furo
ENSTRUG00000012730	upf3a	81	58.568	ENSMLUG00000015905	UPF3A	92	58.568	Myotis_lucifugus
ENSTRUG00000012730	upf3a	88	52.668	ENSNGAG00000019314	Upf3a	95	54.146	Nannospalax_galili
ENSTRUG00000012730	upf3a	99	87.033	ENSNBRG00000000828	upf3a	98	87.225	Neolamprologus_brichardi
ENSTRUG00000012730	upf3a	91	55.955	ENSNLEG00000007563	UPF3A	95	55.730	Nomascus_leucogenys
ENSTRUG00000012730	upf3a	99	86.245	ENSONIG00000006817	upf3a	98	86.433	Oreochromis_niloticus
ENSTRUG00000012730	upf3a	77	55.191	ENSOANG00000006985	-	95	55.191	Ornithorhynchus_anatinus
ENSTRUG00000012730	upf3a	83	49.519	ENSORLG00000001026	upf3b	90	48.585	Oryzias_latipes
ENSTRUG00000012730	upf3a	100	78.801	ENSORLG00000010911	upf3a	100	78.801	Oryzias_latipes
ENSTRUG00000012730	upf3a	83	49.519	ENSORLG00020003758	upf3b	92	47.511	Oryzias_latipes_hni
ENSTRUG00000012730	upf3a	100	80.131	ENSORLG00020014317	upf3a	100	80.131	Oryzias_latipes_hni
ENSTRUG00000012730	upf3a	100	79.050	ENSORLG00015017339	upf3a	58	79.050	Oryzias_latipes_hsok
ENSTRUG00000012730	upf3a	83	50.000	ENSORLG00015012954	upf3b	92	47.964	Oryzias_latipes_hsok
ENSTRUG00000012730	upf3a	100	80.994	ENSOMEG00000014425	upf3a	100	80.994	Oryzias_melastigma
ENSTRUG00000012730	upf3a	51	61.224	ENSOMEG00000014736	upf3b	93	47.807	Oryzias_melastigma
ENSTRUG00000012730	upf3a	73	59.827	ENSOGAG00000004788	UPF3A	83	59.827	Otolemur_garnettii
ENSTRUG00000012730	upf3a	85	56.824	ENSOARG00000009004	UPF3A	84	56.824	Ovis_aries
ENSTRUG00000012730	upf3a	89	55.658	ENSPPAG00000042267	UPF3A	91	55.427	Pan_paniscus
ENSTRUG00000012730	upf3a	91	55.305	ENSPPRG00000025062	UPF3A	96	54.310	Panthera_pardus
ENSTRUG00000012730	upf3a	81	47.326	ENSPTRG00000041835	-	85	43.850	Pan_troglodytes
ENSTRUG00000012730	upf3a	85	43.000	ENSPTRG00000051640	-	85	43.864	Pan_troglodytes
ENSTRUG00000012730	upf3a	91	54.405	ENSPTRG00000006073	UPF3A	95	54.405	Pan_troglodytes
ENSTRUG00000012730	upf3a	81	48.128	ENSPTRG00000041187	-	86	44.652	Pan_troglodytes
ENSTRUG00000012730	upf3a	91	56.757	ENSPANG00000004346	UPF3A	95	56.757	Papio_anubis
ENSTRUG00000012730	upf3a	97	71.269	ENSPKIG00000004422	upf3a	99	68.443	Paramormyrops_kingsleyae
ENSTRUG00000012730	upf3a	90	46.187	ENSPKIG00000019226	upf3b	86	65.248	Paramormyrops_kingsleyae
ENSTRUG00000012730	upf3a	83	64.646	ENSPSIG00000007468	UPF3A	96	64.646	Pelodiscus_sinensis
ENSTRUG00000012730	upf3a	100	78.675	ENSPMGG00000012696	upf3a	100	78.675	Periophthalmus_magnuspinnatus
ENSTRUG00000012730	upf3a	82	57.143	ENSPEMG00000019968	-	89	57.143	Peromyscus_maniculatus_bairdii
ENSTRUG00000012730	upf3a	76	66.520	ENSPCIG00000019590	-	92	64.762	Phascolarctos_cinereus
ENSTRUG00000012730	upf3a	100	81.425	ENSPFOG00000013222	upf3a	100	81.425	Poecilia_formosa
ENSTRUG00000012730	upf3a	50	63.900	ENSPLAG00000019922	upf3b	89	50.121	Poecilia_latipinna
ENSTRUG00000012730	upf3a	99	82.301	ENSPLAG00000011960	upf3a	99	82.483	Poecilia_latipinna
ENSTRUG00000012730	upf3a	50	63.900	ENSPLAG00000005105	upf3b	89	50.121	Poecilia_latipinna
ENSTRUG00000012730	upf3a	100	78.261	ENSPMEG00000000836	upf3a	100	78.261	Poecilia_mexicana
ENSTRUG00000012730	upf3a	50	63.900	ENSPMEG00000023532	upf3b	89	50.121	Poecilia_mexicana
ENSTRUG00000012730	upf3a	91	54.626	ENSPPYG00000005536	UPF3A	95	54.626	Pongo_abelii
ENSTRUG00000012730	upf3a	87	48.148	ENSPCOG00000021960	UPF3B	65	59.716	Propithecus_coquereli
ENSTRUG00000012730	upf3a	83	54.660	ENSPVAG00000005656	UPF3A	88	52.570	Pteropus_vampyrus
ENSTRUG00000012730	upf3a	99	84.144	ENSPNYG00000011289	upf3a	98	84.144	Pundamilia_nyererei
ENSTRUG00000012730	upf3a	83	50.980	ENSPNYG00000009846	upf3b	90	51.914	Pundamilia_nyererei
ENSTRUG00000012730	upf3a	99	78.242	ENSPNAG00000019532	upf3a	99	78.242	Pygocentrus_nattereri
ENSTRUG00000012730	upf3a	87	48.307	ENSPNAG00000021528	upf3b	92	49.541	Pygocentrus_nattereri
ENSTRUG00000012730	upf3a	86	58.438	ENSRBIG00000034007	UPF3A	89	58.438	Rhinopithecus_bieti
ENSTRUG00000012730	upf3a	83	59.221	ENSRROG00000012212	UPF3A	82	59.221	Rhinopithecus_roxellana
ENSTRUG00000012730	upf3a	76	55.833	ENSSBOG00000029989	UPF3A	96	48.812	Saimiri_boliviensis_boliviensis
ENSTRUG00000012730	upf3a	83	49.755	ENSSBOG00000019740	UPF3B	78	67.485	Saimiri_boliviensis_boliviensis
ENSTRUG00000012730	upf3a	82	49.631	ENSSHAG00000008634	UPF3B	83	49.272	Sarcophilus_harrisii
ENSTRUG00000012730	upf3a	83	65.152	ENSSHAG00000009895	UPF3A	96	64.039	Sarcophilus_harrisii
ENSTRUG00000012730	upf3a	99	67.763	ENSSFOG00015021851	upf3a	99	67.105	Scleropages_formosus
ENSTRUG00000012730	upf3a	58	62.182	ENSSFOG00015005614	upf3b	92	50.236	Scleropages_formosus
ENSTRUG00000012730	upf3a	83	50.000	ENSSMAG00000012913	upf3b	88	50.119	Scophthalmus_maximus
ENSTRUG00000012730	upf3a	100	78.004	ENSSMAG00000003858	upf3a	100	79.226	Scophthalmus_maximus
ENSTRUG00000012730	upf3a	99	85.138	ENSSDUG00000009680	upf3a	98	85.138	Seriola_dumerili
ENSTRUG00000012730	upf3a	99	88.132	ENSSLDG00000009700	upf3a	98	88.326	Seriola_lalandi_dorsalis
ENSTRUG00000012730	upf3a	80	46.615	ENSSARG00000007262	UPF3A	92	46.354	Sorex_araneus
ENSTRUG00000012730	upf3a	83	51.095	ENSSPUG00000013082	UPF3B	84	47.962	Sphenodon_punctatus
ENSTRUG00000012730	upf3a	51	65.984	ENSSPAG00000009989	upf3b	93	50.000	Stegastes_partitus
ENSTRUG00000012730	upf3a	99	84.176	ENSSPAG00000007938	upf3a	98	78.901	Stegastes_partitus
ENSTRUG00000012730	upf3a	82	58.462	ENSSSCG00000024679	UPF3A	79	57.538	Sus_scrofa
ENSTRUG00000012730	upf3a	83	65.823	ENSTGUG00000009493	UPF3A	99	65.823	Taeniopygia_guttata
ENSTRUG00000012730	upf3a	84	82.234	ENSTNIG00000014973	upf3a	99	81.170	Tetraodon_nigroviridis
ENSTRUG00000012730	upf3a	62	51.701	ENSTBEG00000017186	-	93	51.701	Tupaia_belangeri
ENSTRUG00000012730	upf3a	73	53.803	ENSTTRG00000015414	UPF3A	73	53.803	Tursiops_truncatus
ENSTRUG00000012730	upf3a	81	56.919	ENSVPAG00000003525	UPF3A	94	56.919	Vicugna_pacos
ENSTRUG00000012730	upf3a	91	53.162	ENSXETG00000002572	upf3a	100	53.162	Xenopus_tropicalis
ENSTRUG00000012730	upf3a	83	43.781	ENSXETG00000007440	upf3b	78	64.444	Xenopus_tropicalis
ENSTRUG00000012730	upf3a	83	47.743	ENSXMAG00000013680	upf3b	90	49.761	Xiphophorus_maculatus
ENSTRUG00000012730	upf3a	100	81.466	ENSXMAG00000013452	upf3a	100	81.466	Xiphophorus_maculatus