EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSTRUG00000013121 (Gene tree)
Gene ID: 101071137
Gene Symbol: pum1
Alias: fb96a03|si:ch211-285e16.1|wu:fb96a03|wu:fb96a08|zgc:63671
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 14040 bases
Position: chr12:1390781-1404820
Accession: 101071137
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000047848	PUF	PF00806.19	6.8e-71	1	8
ENSTRUP00000047848	PUF	PF00806.19	6.8e-71	2	8
ENSTRUP00000047848	PUF	PF00806.19	6.8e-71	3	8
ENSTRUP00000047848	PUF	PF00806.19	6.8e-71	4	8
ENSTRUP00000047848	PUF	PF00806.19	6.8e-71	5	8
ENSTRUP00000047848	PUF	PF00806.19	6.8e-71	6	8
ENSTRUP00000047848	PUF	PF00806.19	6.8e-71	7	8
ENSTRUP00000047848	PUF	PF00806.19	6.8e-71	8	8
ENSTRUP00000033361	PUF	PF00806.19	2.5e-69	1	8
ENSTRUP00000033361	PUF	PF00806.19	2.5e-69	2	8
ENSTRUP00000033361	PUF	PF00806.19	2.5e-69	3	8
ENSTRUP00000033361	PUF	PF00806.19	2.5e-69	4	8
ENSTRUP00000033361	PUF	PF00806.19	2.5e-69	5	8
ENSTRUP00000033361	PUF	PF00806.19	2.5e-69	6	8
ENSTRUP00000033361	PUF	PF00806.19	2.5e-69	7	8
ENSTRUP00000033361	PUF	PF00806.19	2.5e-69	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000033487	-	3500	XM_003968830	ENSTRUP00000033361	1162 (aa)	XP_003968879	H2U8U5
ENSTRUT00000052776	-	2748	-	ENSTRUP00000047848	915 (aa)	-	-

Gene Model

Click here to download ENSTRUG00000013121's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000013121's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSTRUG00000013121	pum1	90	70.641	ENSTRUG00000018167	pum2	50	76.471

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000013121	pum1	94	91.084	ENSG00000134644	PUM1	98	91.566	Homo_sapiens
ENSTRUG00000013121	pum1	100	98.750	ENSAPOG00000021632	pum1	100	99.518	Acanthochromis_polyacanthus
ENSTRUG00000013121	pum1	100	83.005	ENSAMEG00000017656	PUM1	97	74.194	Ailuropoda_melanoleuca
ENSTRUG00000013121	pum1	100	98.000	ENSACIG00000021013	pum1	100	96.733	Amphilophus_citrinellus
ENSTRUG00000013121	pum1	100	98.750	ENSAOCG00000003944	pum1	100	98.022	Amphiprion_ocellaris
ENSTRUG00000013121	pum1	100	98.750	ENSAPEG00000014550	pum1	100	98.022	Amphiprion_percula
ENSTRUG00000013121	pum1	100	98.625	ENSATEG00000016004	pum1	100	97.678	Anabas_testudineus
ENSTRUG00000013121	pum1	100	83.600	ENSAPLG00000009351	PUM1	100	74.752	Anas_platyrhynchos
ENSTRUG00000013121	pum1	100	83.045	ENSACAG00000000682	PUM1	98	76.139	Anolis_carolinensis
ENSTRUG00000013121	pum1	93	90.843	ENSANAG00000027865	PUM1	100	91.325	Aotus_nancymaae
ENSTRUG00000013121	pum1	92	97.371	ENSACLG00000019354	pum1	100	97.371	Astatotilapia_calliptera
ENSTRUG00000013121	pum1	100	82.203	ENSAMXG00000020607	pum1	96	82.288	Astyanax_mexicanus
ENSTRUG00000013121	pum1	94	91.566	ENSBTAG00000018979	PUM1	100	92.048	Bos_taurus
ENSTRUG00000013121	pum1	94	91.084	ENSCJAG00000006035	PUM1	100	91.566	Callithrix_jacchus
ENSTRUG00000013121	pum1	100	81.436	ENSCAFG00000011205	PUM1	57	88.403	Canis_familiaris
ENSTRUG00000013121	pum1	96	83.210	ENSCAFG00020024616	PUM1	98	81.310	Canis_lupus_dingo
ENSTRUG00000013121	pum1	94	91.084	ENSCHIG00000012952	PUM1	100	91.566	Capra_hircus
ENSTRUG00000013121	pum1	100	83.107	ENSTSYG00000008868	PUM1	100	82.410	Carlito_syrichta
ENSTRUG00000013121	pum1	100	82.840	ENSCPOG00000031613	PUM1	100	80.817	Cavia_porcellus
ENSTRUG00000013121	pum1	94	91.566	ENSCATG00000017991	PUM1	93	92.048	Cercocebus_atys
ENSTRUG00000013121	pum1	94	90.843	ENSCLAG00000007662	PUM1	100	91.325	Chinchilla_lanigera
ENSTRUG00000013121	pum1	100	81.509	ENSCSAG00000001028	PUM1	100	73.339	Chlorocebus_sabaeus
ENSTRUG00000013121	pum1	91	72.347	ENSCHOG00000010245	PUM1	93	65.700	Choloepus_hoffmanni
ENSTRUG00000013121	pum1	100	82.716	ENSCPBG00000009288	PUM1	100	81.312	Chrysemys_picta_bellii
ENSTRUG00000013121	pum1	94	91.084	ENSCANG00000042606	PUM1	100	91.566	Colobus_angolensis_palliatus
ENSTRUG00000013121	pum1	100	83.024	ENSCGRG00001024949	Pum1	100	82.324	Cricetulus_griseus_chok1gshd
ENSTRUG00000013121	pum1	100	83.024	ENSCGRG00000014197	Pum1	100	82.324	Cricetulus_griseus_crigri
ENSTRUG00000013121	pum1	92	96.064	ENSCSEG00000015981	pum1	100	96.064	Cynoglossus_semilaevis
ENSTRUG00000013121	pum1	100	98.305	ENSCVAG00000007043	pum1	100	96.561	Cyprinodon_variegatus
ENSTRUG00000013121	pum1	100	89.277	ENSDARG00000099256	pum1	100	81.441	Danio_rerio
ENSTRUG00000013121	pum1	100	83.600	ENSDNOG00000010939	PUM1	100	74.752	Dasypus_novemcinctus
ENSTRUG00000013121	pum1	87	100.000	ENSETEG00000004355	PUM1	87	71.195	Echinops_telfairi
ENSTRUG00000013121	pum1	100	83.210	ENSEASG00005010813	PUM1	100	74.316	Equus_asinus_asinus
ENSTRUG00000013121	pum1	100	83.210	ENSECAG00000021369	PUM1	100	74.172	Equus_caballus
ENSTRUG00000013121	pum1	79	90.222	ENSEEUG00000003871	PUM1	74	91.111	Erinaceus_europaeus
ENSTRUG00000013121	pum1	100	92.467	ENSELUG00000002409	pum1	100	92.373	Esox_lucius
ENSTRUG00000013121	pum1	100	83.149	ENSFCAG00000010374	PUM1	100	81.188	Felis_catus
ENSTRUG00000013121	pum1	100	83.088	ENSFALG00000001214	PUM1	97	74.691	Ficedula_albicollis
ENSTRUG00000013121	pum1	100	82.840	ENSFDAG00000011319	PUM1	100	80.817	Fukomys_damarensis
ENSTRUG00000013121	pum1	70	97.921	ENSGMOG00000010491	pum1	100	90.444	Gadus_morhua
ENSTRUG00000013121	pum1	96	90.141	ENSGALG00000042598	PUM1	99	90.141	Gallus_gallus
ENSTRUG00000013121	pum1	100	98.250	ENSGAFG00000015617	pum1	100	98.072	Gambusia_affinis
ENSTRUG00000013121	pum1	100	97.391	ENSGACG00000005717	pum1	100	96.034	Gasterosteus_aculeatus
ENSTRUG00000013121	pum1	96	90.342	ENSGAGG00000001290	PUM1	99	90.342	Gopherus_agassizii
ENSTRUG00000013121	pum1	94	91.084	ENSGGOG00000011983	PUM1	100	91.566	Gorilla_gorilla
ENSTRUG00000013121	pum1	100	98.375	ENSHBUG00000018718	pum1	100	97.506	Haplochromis_burtoni
ENSTRUG00000013121	pum1	100	82.716	ENSHGLG00000013819	Pum1	100	80.569	Heterocephalus_glaber_female
ENSTRUG00000013121	pum1	100	82.716	ENSHGLG00100008621	Pum1	100	80.569	Heterocephalus_glaber_male
ENSTRUG00000013121	pum1	92	89.306	ENSHCOG00000005149	pum1	100	88.649	Hippocampus_comes
ENSTRUG00000013121	pum1	100	86.015	ENSIPUG00000020421	pum1	100	81.129	Ictalurus_punctatus
ENSTRUG00000013121	pum1	100	83.086	ENSSTOG00000010757	PUM1	100	81.064	Ictidomys_tridecemlineatus
ENSTRUG00000013121	pum1	100	83.086	ENSJJAG00000000530	Pum1	100	81.188	Jaculus_jaculus
ENSTRUG00000013121	pum1	100	98.250	ENSKMAG00000003481	pum1	100	97.248	Kryptolebias_marmoratus
ENSTRUG00000013121	pum1	100	99.153	ENSLBEG00000002527	pum1	100	98.194	Labrus_bergylta
ENSTRUG00000013121	pum1	100	81.450	ENSLACG00000017188	PUM1	99	73.112	Latimeria_chalumnae
ENSTRUG00000013121	pum1	100	88.104	ENSLOCG00000005210	pum1	99	81.068	Lepisosteus_oculatus
ENSTRUG00000013121	pum1	100	82.984	ENSLAFG00000003178	PUM1	100	74.792	Loxodonta_africana
ENSTRUG00000013121	pum1	94	91.566	ENSMFAG00000010291	PUM1	100	92.048	Macaca_fascicularis
ENSTRUG00000013121	pum1	94	91.084	ENSMMUG00000013520	PUM1	100	91.566	Macaca_mulatta
ENSTRUG00000013121	pum1	94	91.084	ENSMNEG00000034639	PUM1	100	91.566	Macaca_nemestrina
ENSTRUG00000013121	pum1	94	91.084	ENSMLEG00000038743	PUM1	100	91.566	Mandrillus_leucophaeus
ENSTRUG00000013121	pum1	100	99.153	ENSMAMG00000011606	pum1	100	97.506	Mastacembelus_armatus
ENSTRUG00000013121	pum1	100	98.375	ENSMZEG00005005834	pum1	100	97.506	Maylandia_zebra
ENSTRUG00000013121	pum1	100	83.827	ENSMGAG00000000724	PUM1	100	76.722	Meleagris_gallopavo
ENSTRUG00000013121	pum1	100	82.797	ENSMAUG00000022090	Pum1	100	82.797	Mesocricetus_auratus
ENSTRUG00000013121	pum1	94	90.144	ENSMICG00000012213	-	100	88.675	Microcebus_murinus
ENSTRUG00000013121	pum1	94	90.843	ENSMICG00000007713	-	100	91.325	Microcebus_murinus
ENSTRUG00000013121	pum1	100	82.942	ENSMOCG00000015463	Pum1	100	82.447	Microtus_ochrogaster
ENSTRUG00000013121	pum1	92	98.795	ENSMMOG00000019817	pum1	100	72.593	Mola_mola
ENSTRUG00000013121	pum1	100	82.367	ENSMODG00000017067	PUM1	100	74.419	Monodelphis_domestica
ENSTRUG00000013121	pum1	100	82.550	MGP_CAROLIEiJ_G0026549	Pum1	100	80.569	Mus_caroli
ENSTRUG00000013121	pum1	100	82.426	ENSMUSG00000028580	Pum1	100	80.446	Mus_musculus
ENSTRUG00000013121	pum1	100	82.426	MGP_PahariEiJ_G0028881	Pum1	100	80.446	Mus_pahari
ENSTRUG00000013121	pum1	100	82.302	MGP_SPRETEiJ_G0027529	Pum1	100	80.569	Mus_spretus
ENSTRUG00000013121	pum1	100	83.580	ENSMPUG00000015454	PUM1	100	74.316	Mustela_putorius_furo
ENSTRUG00000013121	pum1	100	83.313	ENSMLUG00000006490	PUM1	100	74.089	Myotis_lucifugus
ENSTRUG00000013121	pum1	100	83.086	ENSNGAG00000002378	Pum1	100	81.064	Nannospalax_galili
ENSTRUG00000013121	pum1	100	97.514	ENSNBRG00000010689	pum1	100	98.500	Neolamprologus_brichardi
ENSTRUG00000013121	pum1	94	87.952	ENSNLEG00000001151	PUM1	100	88.434	Nomascus_leucogenys
ENSTRUG00000013121	pum1	76	77.586	ENSMEUG00000000976	-	67	80.418	Notamacropus_eugenii
ENSTRUG00000013121	pum1	82	91.589	ENSOPRG00000001776	PUM1	75	91.589	Ochotona_princeps
ENSTRUG00000013121	pum1	100	82.840	ENSODEG00000003465	PUM1	100	80.693	Octodon_degus
ENSTRUG00000013121	pum1	100	98.500	ENSONIG00000002290	pum1	100	97.764	Oreochromis_niloticus
ENSTRUG00000013121	pum1	83	67.909	ENSOANG00000004902	-	100	61.499	Ornithorhynchus_anatinus
ENSTRUG00000013121	pum1	99	83.271	ENSOCUG00000008641	PUM1	99	74.212	Oryctolagus_cuniculus
ENSTRUG00000013121	pum1	100	97.875	ENSORLG00000011482	pum1	100	96.487	Oryzias_latipes
ENSTRUG00000013121	pum1	100	97.875	ENSORLG00020019461	pum1	100	96.487	Oryzias_latipes_hni
ENSTRUG00000013121	pum1	100	98.000	ENSORLG00015011375	pum1	100	96.487	Oryzias_latipes_hsok
ENSTRUG00000013121	pum1	100	79.213	ENSOGAG00000011063	PUM1	100	71.761	Otolemur_garnettii
ENSTRUG00000013121	pum1	94	91.084	ENSOARG00000001899	PUM1	100	91.566	Ovis_aries
ENSTRUG00000013121	pum1	94	91.084	ENSPPAG00000044003	PUM1	100	91.566	Pan_paniscus
ENSTRUG00000013121	pum1	100	83.313	ENSPPRG00000001370	PUM1	100	81.064	Panthera_pardus
ENSTRUG00000013121	pum1	100	83.066	ENSPTIG00000010798	PUM1	100	81.559	Panthera_tigris_altaica
ENSTRUG00000013121	pum1	94	91.084	ENSPTRG00000000453	PUM1	100	91.566	Pan_troglodytes
ENSTRUG00000013121	pum1	94	91.566	ENSPANG00000016338	PUM1	100	92.048	Papio_anubis
ENSTRUG00000013121	pum1	95	92.530	ENSPKIG00000010578	pum1	100	77.000	Paramormyrops_kingsleyae
ENSTRUG00000013121	pum1	100	83.931	ENSPSIG00000014118	PUM1	100	74.979	Pelodiscus_sinensis
ENSTRUG00000013121	pum1	100	95.910	ENSPMGG00000005836	pum1	100	97.458	Periophthalmus_magnuspinnatus
ENSTRUG00000013121	pum1	100	82.797	ENSPEMG00000010009	Pum1	100	82.797	Peromyscus_maniculatus_bairdii
ENSTRUG00000013121	pum1	94	91.807	ENSPCIG00000014151	PUM1	100	91.566	Phascolarctos_cinereus
ENSTRUG00000013121	pum1	94	97.875	ENSPFOG00000007289	pum1	99	97.377	Poecilia_formosa
ENSTRUG00000013121	pum1	100	97.875	ENSPLAG00000007256	pum1	100	96.614	Poecilia_latipinna
ENSTRUG00000013121	pum1	92	96.875	ENSPMEG00000019543	pum1	99	96.172	Poecilia_mexicana
ENSTRUG00000013121	pum1	100	98.375	ENSPREG00000005195	pum1	100	97.077	Poecilia_reticulata
ENSTRUG00000013121	pum1	100	83.333	ENSPPYG00000001621	PUM1	100	72.949	Pongo_abelii
ENSTRUG00000013121	pum1	81	92.901	ENSPCAG00000001979	PUM1	73	93.519	Procavia_capensis
ENSTRUG00000013121	pum1	94	90.843	ENSPCOG00000004398	PUM1	100	91.325	Propithecus_coquereli
ENSTRUG00000013121	pum1	100	80.370	ENSPVAG00000005207	PUM1	97	72.471	Pteropus_vampyrus
ENSTRUG00000013121	pum1	100	98.375	ENSPNYG00000009518	pum1	100	97.420	Pundamilia_nyererei
ENSTRUG00000013121	pum1	100	88.015	ENSPNAG00000026728	pum1	100	82.563	Pygocentrus_nattereri
ENSTRUG00000013121	pum1	100	83.045	ENSRNOG00000011709	Pum1	100	73.985	Rattus_norvegicus
ENSTRUG00000013121	pum1	94	91.566	ENSRBIG00000042521	PUM1	100	92.048	Rhinopithecus_bieti
ENSTRUG00000013121	pum1	94	91.084	ENSRROG00000020156	PUM1	100	91.566	Rhinopithecus_roxellana
ENSTRUG00000013121	pum1	94	91.084	ENSSBOG00000032037	PUM1	100	91.566	Saimiri_boliviensis_boliviensis
ENSTRUG00000013121	pum1	100	82.367	ENSSHAG00000010918	PUM1	100	74.502	Sarcophilus_harrisii
ENSTRUG00000013121	pum1	100	98.500	ENSSMAG00000010918	pum1	100	97.248	Scophthalmus_maximus
ENSTRUG00000013121	pum1	100	99.153	ENSSDUG00000009021	pum1	100	98.366	Seriola_dumerili
ENSTRUG00000013121	pum1	100	99.153	ENSSLDG00000009667	pum1	100	98.201	Seriola_lalandi_dorsalis
ENSTRUG00000013121	pum1	97	82.992	ENSSARG00000003055	PUM1	88	79.162	Sorex_araneus
ENSTRUG00000013121	pum1	100	83.580	ENSSPUG00000006267	PUM1	100	74.731	Sphenodon_punctatus
ENSTRUG00000013121	pum1	100	98.750	ENSSPAG00000016636	pum1	100	97.936	Stegastes_partitus
ENSTRUG00000013121	pum1	100	88.934	ENSSSCG00000003591	PUM1	100	92.048	Sus_scrofa
ENSTRUG00000013121	pum1	100	99.251	ENSTNIG00000016983	pum1	99	98.204	Tetraodon_nigroviridis
ENSTRUG00000013121	pum1	87	90.244	ENSTBEG00000013810	PUM1	89	90.244	Tupaia_belangeri
ENSTRUG00000013121	pum1	91	92.105	ENSTTRG00000007436	PUM1	88	76.734	Tursiops_truncatus
ENSTRUG00000013121	pum1	98	81.818	ENSUAMG00000018262	-	100	72.348	Ursus_americanus
ENSTRUG00000013121	pum1	58	91.084	ENSUMAG00000009211	PUM1	57	92.048	Ursus_maritimus
ENSTRUG00000013121	pum1	100	83.210	ENSVPAG00000005902	PUM1	92	81.559	Vicugna_pacos
ENSTRUG00000013121	pum1	100	83.107	ENSVVUG00000014631	PUM1	100	75.912	Vulpes_vulpes
ENSTRUG00000013121	pum1	100	79.038	ENSXETG00000012904	pum1	99	71.854	Xenopus_tropicalis
ENSTRUG00000013121	pum1	100	97.750	ENSXMAG00000002945	pum1	100	96.720	Xiphophorus_maculatus