EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000013134 (Gene tree)
Gene ID: 101072787
Gene Symbol: cpsf1
Alias: wu:fb24c01
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 9074 bases
Position: chr12:5645130-5654203
Accession: 101072787
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000033408	CPSF_A	PF03178.15	1.3e-88	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000033534	-	4885	XM_011609197	ENSTRUP00000033408	1417 (aa)	XP_011607499	H2U8Z2
ENSTRUT00000055800	-	1188	-	ENSTRUP00000050666	395 (aa)	-	-

Gene Model

Click here to download ENSTRUG00000013134's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000013134's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000013134	cpsf1	99	77.638	ENSG00000071894	CPSF1	100	76.852	Homo_sapiens
ENSTRUG00000013134	cpsf1	99	91.056	ENSAPOG00000019621	cpsf1	99	91.056	Acanthochromis_polyacanthus
ENSTRUG00000013134	cpsf1	99	76.734	ENSAMEG00000005557	CPSF1	99	76.524	Ailuropoda_melanoleuca
ENSTRUG00000013134	cpsf1	99	86.255	ENSACIG00000006112	cpsf1	96	87.097	Amphilophus_citrinellus
ENSTRUG00000013134	cpsf1	99	88.034	ENSAOCG00000007120	cpsf1	96	88.174	Amphiprion_ocellaris
ENSTRUG00000013134	cpsf1	99	89.153	ENSAPEG00000005755	cpsf1	96	89.433	Amphiprion_percula
ENSTRUG00000013134	cpsf1	99	91.366	ENSATEG00000011097	cpsf1	99	91.983	Anabas_testudineus
ENSTRUG00000013134	cpsf1	92	73.716	ENSACAG00000009655	CPSF1	96	73.565	Anolis_carolinensis
ENSTRUG00000013134	cpsf1	99	77.902	ENSANAG00000036514	CPSF1	96	77.972	Aotus_nancymaae
ENSTRUG00000013134	cpsf1	99	90.852	ENSACLG00000012231	cpsf1	99	90.992	Astatotilapia_calliptera
ENSTRUG00000013134	cpsf1	99	77.343	ENSAMXG00000008485	cpsf1	96	77.343	Astyanax_mexicanus
ENSTRUG00000013134	cpsf1	99	76.664	ENSBTAG00000008355	CPSF1	97	78.114	Bos_taurus
ENSTRUG00000013134	cpsf1	99	32.396	WBGene00022301	cpsf-1	94	41.493	Caenorhabditis_elegans
ENSTRUG00000013134	cpsf1	99	77.972	ENSCJAG00000021421	CPSF1	96	77.832	Callithrix_jacchus
ENSTRUG00000013134	cpsf1	99	78.105	ENSCAFG00000001600	CPSF1	99	78.175	Canis_familiaris
ENSTRUG00000013134	cpsf1	99	78.105	ENSCAFG00020020821	CPSF1	96	78.175	Canis_lupus_dingo
ENSTRUG00000013134	cpsf1	99	74.649	ENSCHIG00000015833	CPSF1	96	74.508	Capra_hircus
ENSTRUG00000013134	cpsf1	99	78.252	ENSTSYG00000028560	CPSF1	100	77.778	Carlito_syrichta
ENSTRUG00000013134	cpsf1	99	77.101	ENSCAPG00000014921	CPSF1	99	76.961	Cavia_aperea
ENSTRUG00000013134	cpsf1	99	76.837	ENSCPOG00000011448	CPSF1	96	76.697	Cavia_porcellus
ENSTRUG00000013134	cpsf1	99	78.252	ENSCCAG00000037658	CPSF1	100	77.064	Cebus_capucinus
ENSTRUG00000013134	cpsf1	99	77.715	ENSCATG00000037234	CPSF1	94	83.154	Cercocebus_atys
ENSTRUG00000013134	cpsf1	99	78.151	ENSCLAG00000012166	CPSF1	96	78.011	Chinchilla_lanigera
ENSTRUG00000013134	cpsf1	99	77.832	ENSCSAG00000008502	CPSF1	96	77.832	Chlorocebus_sabaeus
ENSTRUG00000013134	cpsf1	99	79.235	ENSCPBG00000018910	CPSF1	92	79.602	Chrysemys_picta_bellii
ENSTRUG00000013134	cpsf1	95	47.334	ENSCING00000000514	-	95	47.261	Ciona_intestinalis
ENSTRUG00000013134	cpsf1	99	47.516	ENSCSAVG00000002293	-	99	46.154	Ciona_savignyi
ENSTRUG00000013134	cpsf1	99	75.279	ENSCANG00000032760	CPSF1	100	77.315	Colobus_angolensis_palliatus
ENSTRUG00000013134	cpsf1	99	78.097	ENSCGRG00001016344	Cpsf1	96	77.957	Cricetulus_griseus_chok1gshd
ENSTRUG00000013134	cpsf1	99	76.347	ENSCGRG00000003118	Cpsf1	96	76.277	Cricetulus_griseus_crigri
ENSTRUG00000013134	cpsf1	97	88.210	ENSCSEG00000013464	cpsf1	99	88.282	Cynoglossus_semilaevis
ENSTRUG00000013134	cpsf1	89	85.383	ENSCVAG00000014059	cpsf1	100	78.241	Cyprinodon_variegatus
ENSTRUG00000013134	cpsf1	99	85.203	ENSDARG00000034178	cpsf1	96	85.484	Danio_rerio
ENSTRUG00000013134	cpsf1	55	82.184	ENSDNOG00000043654	CPSF1	87	82.184	Dasypus_novemcinctus
ENSTRUG00000013134	cpsf1	99	77.747	ENSDORG00000006278	Cpsf1	99	77.747	Dipodomys_ordii
ENSTRUG00000013134	cpsf1	99	43.874	FBgn0024698	Cpsf160	94	43.967	Drosophila_melanogaster
ENSTRUG00000013134	cpsf1	80	82.550	ENSETEG00000006022	CPSF1	79	82.550	Echinops_telfairi
ENSTRUG00000013134	cpsf1	99	78.331	ENSEASG00005010774	CPSF1	96	78.401	Equus_asinus_asinus
ENSTRUG00000013134	cpsf1	99	78.261	ENSECAG00000022209	CPSF1	96	78.331	Equus_caballus
ENSTRUG00000013134	cpsf1	99	78.291	ENSEEUG00000000471	CPSF1	96	78.081	Erinaceus_europaeus
ENSTRUG00000013134	cpsf1	99	83.889	ENSELUG00000012271	cpsf1	100	84.664	Esox_lucius
ENSTRUG00000013134	cpsf1	99	78.291	ENSFDAG00000016060	CPSF1	96	78.151	Fukomys_damarensis
ENSTRUG00000013134	cpsf1	99	85.315	ENSFHEG00000016801	cpsf1	96	85.385	Fundulus_heteroclitus
ENSTRUG00000013134	cpsf1	99	84.944	ENSGMOG00000000796	cpsf1	96	85.364	Gadus_morhua
ENSTRUG00000013134	cpsf1	96	84.604	ENSGAFG00000018890	cpsf1	96	85.219	Gambusia_affinis
ENSTRUG00000013134	cpsf1	99	87.754	ENSGACG00000008703	cpsf1	100	87.251	Gasterosteus_aculeatus
ENSTRUG00000013134	cpsf1	99	76.487	ENSGAGG00000004276	CPSF1	98	80.000	Gopherus_agassizii
ENSTRUG00000013134	cpsf1	99	77.817	ENSGGOG00000016185	CPSF1	100	76.852	Gorilla_gorilla
ENSTRUG00000013134	cpsf1	99	88.670	ENSHBUG00000018900	cpsf1	96	89.022	Haplochromis_burtoni
ENSTRUG00000013134	cpsf1	99	78.151	ENSHGLG00000016139	CPSF1	96	78.011	Heterocephalus_glaber_female
ENSTRUG00000013134	cpsf1	99	78.081	ENSHGLG00100009750	CPSF1	96	77.941	Heterocephalus_glaber_male
ENSTRUG00000013134	cpsf1	99	87.350	ENSHCOG00000018509	cpsf1	96	87.571	Hippocampus_comes
ENSTRUG00000013134	cpsf1	99	81.333	ENSIPUG00000011259	cpsf1	96	81.232	Ictalurus_punctatus
ENSTRUG00000013134	cpsf1	99	77.358	ENSSTOG00000009957	CPSF1	98	77.476	Ictidomys_tridecemlineatus
ENSTRUG00000013134	cpsf1	99	78.191	ENSJJAG00000023002	Cpsf1	96	78.027	Jaculus_jaculus
ENSTRUG00000013134	cpsf1	91	91.850	ENSKMAG00000001940	cpsf1	95	91.850	Kryptolebias_marmoratus
ENSTRUG00000013134	cpsf1	99	88.740	ENSLBEG00000003601	cpsf1	96	89.444	Labrus_bergylta
ENSTRUG00000013134	cpsf1	88	73.580	ENSLACG00000000233	CPSF1	92	73.260	Latimeria_chalumnae
ENSTRUG00000013134	cpsf1	99	80.629	ENSLOCG00000008484	cpsf1	96	81.189	Lepisosteus_oculatus
ENSTRUG00000013134	cpsf1	99	77.965	ENSLAFG00000022601	CPSF1	99	77.895	Loxodonta_africana
ENSTRUG00000013134	cpsf1	99	77.692	ENSMFAG00000037013	CPSF1	94	83.154	Macaca_fascicularis
ENSTRUG00000013134	cpsf1	99	77.692	ENSMMUG00000007380	CPSF1	93	84.436	Macaca_mulatta
ENSTRUG00000013134	cpsf1	99	77.692	ENSMNEG00000043564	CPSF1	99	77.902	Macaca_nemestrina
ENSTRUG00000013134	cpsf1	99	77.622	ENSMLEG00000043010	CPSF1	100	76.852	Mandrillus_leucophaeus
ENSTRUG00000013134	cpsf1	99	91.147	ENSMAMG00000003803	cpsf1	99	90.992	Mastacembelus_armatus
ENSTRUG00000013134	cpsf1	99	86.549	ENSMZEG00005001168	cpsf1	97	86.901	Maylandia_zebra
ENSTRUG00000013134	cpsf1	99	78.261	ENSMAUG00000003601	Cpsf1	96	78.121	Mesocricetus_auratus
ENSTRUG00000013134	cpsf1	99	77.965	ENSMICG00000015767	CPSF1	96	77.801	Microcebus_murinus
ENSTRUG00000013134	cpsf1	99	77.910	ENSMOCG00000022758	Cpsf1	96	77.747	Microtus_ochrogaster
ENSTRUG00000013134	cpsf1	99	88.507	ENSMMOG00000021245	cpsf1	96	88.858	Mola_mola
ENSTRUG00000013134	cpsf1	99	78.386	ENSMODG00000010755	CPSF1	96	78.386	Monodelphis_domestica
ENSTRUG00000013134	cpsf1	99	89.648	ENSMALG00000020545	cpsf1	96	89.930	Monopterus_albus
ENSTRUG00000013134	cpsf1	99	78.376	MGP_CAROLIEiJ_G0019936	Cpsf1	96	78.237	Mus_caroli
ENSTRUG00000013134	cpsf1	99	78.376	ENSMUSG00000034022	Cpsf1	96	78.237	Mus_musculus
ENSTRUG00000013134	cpsf1	99	78.376	MGP_PahariEiJ_G0019946	Cpsf1	96	78.237	Mus_pahari
ENSTRUG00000013134	cpsf1	99	78.376	MGP_SPRETEiJ_G0020839	Cpsf1	96	78.237	Mus_spretus
ENSTRUG00000013134	cpsf1	97	78.058	ENSMPUG00000006419	CPSF1	93	78.042	Mustela_putorius_furo
ENSTRUG00000013134	cpsf1	99	78.097	ENSNGAG00000022460	Cpsf1	96	77.957	Nannospalax_galili
ENSTRUG00000013134	cpsf1	99	83.958	ENSNBRG00000000813	cpsf1	96	83.958	Neolamprologus_brichardi
ENSTRUG00000013134	cpsf1	85	67.568	ENSNLEG00000010633	-	100	76.852	Nomascus_leucogenys
ENSTRUG00000013134	cpsf1	85	83.721	ENSMEUG00000014922	CPSF1	84	83.721	Notamacropus_eugenii
ENSTRUG00000013134	cpsf1	63	87.895	ENSOPRG00000004693	-	70	87.895	Ochotona_princeps
ENSTRUG00000013134	cpsf1	99	78.221	ENSODEG00000013995	CPSF1	96	78.081	Octodon_degus
ENSTRUG00000013134	cpsf1	99	88.866	ENSONIG00000007676	cpsf1	96	89.356	Oreochromis_niloticus
ENSTRUG00000013134	cpsf1	61	75.714	ENSOANG00000010716	CPSF1	89	75.714	Ornithorhynchus_anatinus
ENSTRUG00000013134	cpsf1	99	87.941	ENSORLG00000013544	cpsf1	92	92.181	Oryzias_latipes
ENSTRUG00000013134	cpsf1	99	87.941	ENSORLG00020021693	cpsf1	92	92.181	Oryzias_latipes_hni
ENSTRUG00000013134	cpsf1	99	87.941	ENSORLG00015009979	cpsf1	96	87.887	Oryzias_latipes_hsok
ENSTRUG00000013134	cpsf1	99	87.456	ENSOMEG00000011849	cpsf1	96	87.685	Oryzias_melastigma
ENSTRUG00000013134	cpsf1	99	77.972	ENSOGAG00000000315	CPSF1	96	77.832	Otolemur_garnettii
ENSTRUG00000013134	cpsf1	99	77.832	ENSPPAG00000019280	CPSF1	100	78.281	Pan_paniscus
ENSTRUG00000013134	cpsf1	99	77.832	ENSPTRG00000049288	-	100	78.281	Pan_troglodytes
ENSTRUG00000013134	cpsf1	99	76.495	ENSPTRG00000051253	-	100	78.281	Pan_troglodytes
ENSTRUG00000013134	cpsf1	99	77.692	ENSPANG00000015005	CPSF1	99	77.902	Papio_anubis
ENSTRUG00000013134	cpsf1	99	84.664	ENSPKIG00000002582	cpsf1	100	84.842	Paramormyrops_kingsleyae
ENSTRUG00000013134	cpsf1	99	78.526	ENSPCIG00000009035	CPSF1	96	78.526	Phascolarctos_cinereus
ENSTRUG00000013134	cpsf1	99	88.318	ENSPFOG00000012870	cpsf1	96	88.740	Poecilia_formosa
ENSTRUG00000013134	cpsf1	99	88.318	ENSPREG00000016307	cpsf1	96	88.670	Poecilia_reticulata
ENSTRUG00000013134	cpsf1	99	70.650	ENSPPYG00000018973	CPSF1	96	70.510	Pongo_abelii
ENSTRUG00000013134	cpsf1	94	82.670	ENSPCAG00000011541	CPSF1	93	82.670	Procavia_capensis
ENSTRUG00000013134	cpsf1	99	74.702	ENSPCOG00000020001	CPSF1	100	76.852	Propithecus_coquereli
ENSTRUG00000013134	cpsf1	90	86.000	ENSPVAG00000006761	CPSF1	86	85.924	Pteropus_vampyrus
ENSTRUG00000013134	cpsf1	99	90.717	ENSPNYG00000004906	cpsf1	99	91.069	Pundamilia_nyererei
ENSTRUG00000013134	cpsf1	99	80.000	ENSPNAG00000024395	cpsf1	96	80.000	Pygocentrus_nattereri
ENSTRUG00000013134	cpsf1	99	78.276	ENSRNOG00000030705	Cpsf1	96	78.136	Rattus_norvegicus
ENSTRUG00000013134	cpsf1	99	77.622	ENSRBIG00000044907	CPSF1	100	77.315	Rhinopithecus_bieti
ENSTRUG00000013134	cpsf1	99	77.692	ENSRROG00000044861	CPSF1	100	77.315	Rhinopithecus_roxellana
ENSTRUG00000013134	cpsf1	99	77.972	ENSSBOG00000027177	CPSF1	99	77.832	Saimiri_boliviensis_boliviensis
ENSTRUG00000013134	cpsf1	99	78.456	ENSSHAG00000006500	CPSF1	96	78.456	Sarcophilus_harrisii
ENSTRUG00000013134	cpsf1	98	84.840	ENSSFOG00015004606	cpsf1	100	84.911	Scleropages_formosus
ENSTRUG00000013134	cpsf1	99	90.352	ENSSMAG00000020547	cpsf1	96	90.704	Scophthalmus_maximus
ENSTRUG00000013134	cpsf1	100	88.897	ENSSDUG00000001100	cpsf1	97	89.248	Seriola_dumerili
ENSTRUG00000013134	cpsf1	100	88.959	ENSSLDG00000003619	cpsf1	97	89.170	Seriola_lalandi_dorsalis
ENSTRUG00000013134	cpsf1	89	74.473	ENSSARG00000003643	CPSF1	88	74.317	Sorex_araneus
ENSTRUG00000013134	cpsf1	99	79.860	ENSSPUG00000014396	CPSF1	99	79.930	Sphenodon_punctatus
ENSTRUG00000013134	cpsf1	99	91.268	ENSSPAG00000005349	cpsf1	96	91.338	Stegastes_partitus
ENSTRUG00000013134	cpsf1	99	77.139	ENSSSCG00000005906	CPSF1	96	77.139	Sus_scrofa
ENSTRUG00000013134	cpsf1	99	92.593	ENSTNIG00000014027	cpsf1	96	92.593	Tetraodon_nigroviridis
ENSTRUG00000013134	cpsf1	77	75.088	ENSTBEG00000001756	CPSF1	89	75.088	Tupaia_belangeri
ENSTRUG00000013134	cpsf1	89	82.931	ENSTTRG00000001937	CPSF1	85	82.931	Tursiops_truncatus
ENSTRUG00000013134	cpsf1	99	78.261	ENSUAMG00000006476	CPSF1	97	78.121	Ursus_americanus
ENSTRUG00000013134	cpsf1	99	86.137	ENSXCOG00000003608	cpsf1	96	86.911	Xiphophorus_couchianus
ENSTRUG00000013134	cpsf1	99	85.724	ENSXMAG00000005798	cpsf1	96	86.357	Xiphophorus_maculatus