EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000013311 (Gene tree)
Gene ID: 101064097
Gene Symbol: rbm28
Alias: zgc:56258
Full Name: RNA binding motif protein 28
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Minus strand
Length: 7994 bases
Position: chr9:2069302-2077295
Accession: 101064097
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000033889	RRM_1	PF00076.22	3.3e-57	1	3
ENSTRUP00000033889	RRM_1	PF00076.22	3.3e-57	2	3
ENSTRUP00000033889	RRM_1	PF00076.22	3.3e-57	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000034015	-	4901	XM_011606939	ENSTRUP00000033889	778 (aa)	XP_011605241	H2UAC2

Gene Model

Click here to download ENSTRUG00000013311's gene model file

Pathways

Pathway ID	Pathway Name	Source
tru03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000013311's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000013311	rbm28	82	65.000	ENSG00000106344	RBM28	100	49.761	Homo_sapiens
ENSTRUG00000013311	rbm28	57	67.188	ENSAPOG00000015512	rbm28	100	63.648	Acanthochromis_polyacanthus
ENSTRUG00000013311	rbm28	97	62.069	ENSAMEG00000004776	RBM28	65	62.821	Ailuropoda_melanoleuca
ENSTRUG00000013311	rbm28	55	65.967	ENSACIG00000023153	rbm28	91	65.814	Amphilophus_citrinellus
ENSTRUG00000013311	rbm28	57	67.338	ENSAOCG00000000462	rbm28	100	62.916	Amphiprion_ocellaris
ENSTRUG00000013311	rbm28	57	66.966	ENSAPEG00000012996	rbm28	100	62.051	Amphiprion_percula
ENSTRUG00000013311	rbm28	86	68.075	ENSATEG00000001672	rbm28	92	64.935	Anabas_testudineus
ENSTRUG00000013311	rbm28	99	62.677	ENSACLG00000025024	rbm28	100	61.705	Astatotilapia_calliptera
ENSTRUG00000013311	rbm28	57	59.775	ENSAMXG00000000763	rbm28	99	60.000	Astyanax_mexicanus
ENSTRUG00000013311	rbm28	90	65.000	ENSCJAG00000017731	RBM28	82	51.868	Callithrix_jacchus
ENSTRUG00000013311	rbm28	99	48.750	ENSCAFG00000001667	RBM28	59	53.205	Canis_familiaris
ENSTRUG00000013311	rbm28	99	48.750	ENSCAFG00020021648	RBM28	59	53.205	Canis_lupus_dingo
ENSTRUG00000013311	rbm28	62	52.292	ENSCHIG00000014146	RBM28	59	53.478	Capra_hircus
ENSTRUG00000013311	rbm28	99	49.937	ENSCPOG00000006253	RBM28	58	54.923	Cavia_porcellus
ENSTRUG00000013311	rbm28	99	49.305	ENSCATG00000040497	RBM28	77	65.000	Cercocebus_atys
ENSTRUG00000013311	rbm28	99	46.154	ENSCLAG00000003707	RBM28	61	55.921	Chinchilla_lanigera
ENSTRUG00000013311	rbm28	55	55.039	ENSCHOG00000001994	-	63	55.039	Choloepus_hoffmanni
ENSTRUG00000013311	rbm28	52	49.234	ENSCPBG00000018088	RBM28	76	52.195	Chrysemys_picta_bellii
ENSTRUG00000013311	rbm28	60	36.768	ENSCING00000009238	-	54	37.320	Ciona_intestinalis
ENSTRUG00000013311	rbm28	86	49.728	ENSCANG00000038397	RBM28	69	65.000	Colobus_angolensis_palliatus
ENSTRUG00000013311	rbm28	62	53.659	ENSCGRG00001021278	Rbm28	100	49.437	Cricetulus_griseus_chok1gshd
ENSTRUG00000013311	rbm28	99	58.599	ENSCSEG00000004212	rbm28	61	65.011	Cynoglossus_semilaevis
ENSTRUG00000013311	rbm28	58	66.957	ENSCVAG00000010493	rbm28	99	60.637	Cyprinodon_variegatus
ENSTRUG00000013311	rbm28	86	59.735	ENSDARG00000025332	rbm28	78	59.735	Danio_rerio
ENSTRUG00000013311	rbm28	99	49.241	ENSDNOG00000001124	RBM28	59	52.747	Dasypus_novemcinctus
ENSTRUG00000013311	rbm28	74	52.200	ENSDORG00000004184	Rbm28	86	54.846	Dipodomys_ordii
ENSTRUG00000013311	rbm28	99	44.700	ENSETEG00000007130	RBM28	56	50.233	Echinops_telfairi
ENSTRUG00000013311	rbm28	81	42.986	ENSEBUG00000004419	rbm28	94	42.986	Eptatretus_burgeri
ENSTRUG00000013311	rbm28	63	51.485	ENSEASG00005008528	RBM28	100	49.054	Equus_asinus_asinus
ENSTRUG00000013311	rbm28	63	51.287	ENSECAG00000007745	RBM28	58	53.419	Equus_caballus
ENSTRUG00000013311	rbm28	99	46.154	ENSEEUG00000002389	RBM28	57	48.993	Erinaceus_europaeus
ENSTRUG00000013311	rbm28	99	54.957	ENSELUG00000020602	rbm28	59	60.341	Esox_lucius
ENSTRUG00000013311	rbm28	99	48.604	ENSFCAG00000000946	RBM28	80	65.000	Felis_catus
ENSTRUG00000013311	rbm28	84	61.650	ENSGMOG00000007091	rbm28	89	63.077	Gadus_morhua
ENSTRUG00000013311	rbm28	58	65.427	ENSGAFG00000004802	rbm28	98	65.427	Gambusia_affinis
ENSTRUG00000013311	rbm28	57	66.667	ENSGACG00000012612	rbm28	100	61.501	Gasterosteus_aculeatus
ENSTRUG00000013311	rbm28	82	52.133	ENSGAGG00000008873	RBM28	84	65.116	Gopherus_agassizii
ENSTRUG00000013311	rbm28	93	62.448	ENSHBUG00000009611	rbm28	98	61.549	Haplochromis_burtoni
ENSTRUG00000013311	rbm28	99	49.369	ENSHGLG00000005409	RBM28	60	52.677	Heterocephalus_glaber_female
ENSTRUG00000013311	rbm28	99	49.369	ENSHGLG00100016458	RBM28	60	52.677	Heterocephalus_glaber_male
ENSTRUG00000013311	rbm28	99	46.768	ENSHCOG00000010597	rbm28	91	54.222	Hippocampus_comes
ENSTRUG00000013311	rbm28	55	50.000	ENSIPUG00000007103	rbm28	81	50.000	Ictalurus_punctatus
ENSTRUG00000013311	rbm28	99	50.064	ENSSTOG00000002169	RBM28	58	55.217	Ictidomys_tridecemlineatus
ENSTRUG00000013311	rbm28	78	57.065	ENSJJAG00000022400	Rbm28	90	54.060	Jaculus_jaculus
ENSTRUG00000013311	rbm28	58	64.488	ENSKMAG00000013348	rbm28	99	58.003	Kryptolebias_marmoratus
ENSTRUG00000013311	rbm28	58	69.095	ENSLBEG00000012998	rbm28	100	63.510	Labrus_bergylta
ENSTRUG00000013311	rbm28	73	48.962	ENSLACG00000010485	-	100	48.691	Latimeria_chalumnae
ENSTRUG00000013311	rbm28	99	58.247	ENSLOCG00000015541	rbm28	100	58.763	Lepisosteus_oculatus
ENSTRUG00000013311	rbm28	99	49.248	ENSLAFG00000010717	RBM28	59	54.367	Loxodonta_africana
ENSTRUG00000013311	rbm28	99	48.344	ENSMMUG00000007250	RBM28	77	65.000	Macaca_mulatta
ENSTRUG00000013311	rbm28	99	48.923	ENSMNEG00000036970	RBM28	76	65.000	Macaca_nemestrina
ENSTRUG00000013311	rbm28	99	63.543	ENSMAMG00000008525	rbm28	100	63.030	Mastacembelus_armatus
ENSTRUG00000013311	rbm28	93	61.740	ENSMZEG00005019625	rbm28	100	61.149	Maylandia_zebra
ENSTRUG00000013311	rbm28	99	50.767	ENSMOCG00000014615	Rbm28	60	54.486	Microtus_ochrogaster
ENSTRUG00000013311	rbm28	58	69.265	ENSMMOG00000008600	rbm28	93	68.271	Mola_mola
ENSTRUG00000013311	rbm28	99	48.443	ENSMODG00000015151	RBM28	58	53.982	Monodelphis_domestica
ENSTRUG00000013311	rbm28	58	67.249	ENSMALG00000006419	rbm28	100	63.091	Monopterus_albus
ENSTRUG00000013311	rbm28	99	48.241	MGP_CAROLIEiJ_G0028162	Rbm28	59	53.478	Mus_caroli
ENSTRUG00000013311	rbm28	99	49.559	ENSMUSG00000029701	Rbm28	58	53.744	Mus_musculus
ENSTRUG00000013311	rbm28	99	49.365	MGP_PahariEiJ_G0021920	Rbm28	59	53.763	Mus_pahari
ENSTRUG00000013311	rbm28	99	49.305	MGP_SPRETEiJ_G0029162	Rbm28	58	53.744	Mus_spretus
ENSTRUG00000013311	rbm28	99	49.052	ENSMPUG00000006511	RBM28	59	53.747	Mustela_putorius_furo
ENSTRUG00000013311	rbm28	63	52.390	ENSMLUG00000002186	RBM28	59	54.194	Myotis_lucifugus
ENSTRUG00000013311	rbm28	82	65.000	ENSNLEG00000012307	RBM28	78	65.000	Nomascus_leucogenys
ENSTRUG00000013311	rbm28	79	58.642	ENSMEUG00000009611	RBM28	85	58.788	Notamacropus_eugenii
ENSTRUG00000013311	rbm28	99	47.375	ENSODEG00000003213	-	57	51.225	Octodon_degus
ENSTRUG00000013311	rbm28	71	56.417	ENSODEG00000013217	-	83	55.528	Octodon_degus
ENSTRUG00000013311	rbm28	99	63.124	ENSONIG00000014924	rbm28	100	63.198	Oreochromis_niloticus
ENSTRUG00000013311	rbm28	99	45.006	ENSOANG00000000815	-	59	48.667	Ornithorhynchus_anatinus
ENSTRUG00000013311	rbm28	99	48.962	ENSOCUG00000003009	RBM28	58	55.292	Oryctolagus_cuniculus
ENSTRUG00000013311	rbm28	99	61.133	ENSORLG00000009636	rbm28	99	61.211	Oryzias_latipes
ENSTRUG00000013311	rbm28	58	67.177	ENSORLG00020002123	rbm28	99	61.390	Oryzias_latipes_hni
ENSTRUG00000013311	rbm28	84	66.667	ENSORLG00015015030	rbm28	98	66.667	Oryzias_latipes_hsok
ENSTRUG00000013311	rbm28	58	67.904	ENSOMEG00000007801	rbm28	100	62.148	Oryzias_melastigma
ENSTRUG00000013311	rbm28	90	60.000	ENSOGAG00000006011	RBM28	76	60.000	Otolemur_garnettii
ENSTRUG00000013311	rbm28	99	49.563	ENSPPRG00000004420	RBM28	80	65.000	Panthera_pardus
ENSTRUG00000013311	rbm28	99	49.378	ENSPTIG00000008550	RBM28	80	65.000	Panthera_tigris_altaica
ENSTRUG00000013311	rbm28	99	48.618	ENSPANG00000022295	RBM28	77	65.000	Papio_anubis
ENSTRUG00000013311	rbm28	99	52.580	ENSPKIG00000023453	rbm28	99	51.665	Paramormyrops_kingsleyae
ENSTRUG00000013311	rbm28	82	64.039	ENSPMGG00000012840	rbm28	94	61.842	Periophthalmus_magnuspinnatus
ENSTRUG00000013311	rbm28	61	52.941	ENSPCIG00000012810	RBM28	60	53.913	Phascolarctos_cinereus
ENSTRUG00000013311	rbm28	58	64.474	ENSPFOG00000018209	rbm28	59	64.474	Poecilia_formosa
ENSTRUG00000013311	rbm28	57	64.653	ENSPLAG00000016078	rbm28	56	64.653	Poecilia_latipinna
ENSTRUG00000013311	rbm28	58	64.680	ENSPMEG00000004292	rbm28	59	64.680	Poecilia_mexicana
ENSTRUG00000013311	rbm28	99	59.331	ENSPREG00000014287	rbm28	75	64.238	Poecilia_reticulata
ENSTRUG00000013311	rbm28	72	49.861	ENSPCAG00000008223	RBM28	83	49.457	Procavia_capensis
ENSTRUG00000013311	rbm28	90	65.000	ENSPCOG00000016797	RBM28	76	65.000	Propithecus_coquereli
ENSTRUG00000013311	rbm28	69	61.502	ENSPVAG00000005443	RBM28	70	61.722	Pteropus_vampyrus
ENSTRUG00000013311	rbm28	99	61.647	ENSPNYG00000014003	rbm28	100	61.862	Pundamilia_nyererei
ENSTRUG00000013311	rbm28	99	48.696	ENSRNOG00000005468	Rbm28	59	55.435	Rattus_norvegicus
ENSTRUG00000013311	rbm28	99	49.184	ENSRBIG00000033990	RBM28	77	65.000	Rhinopithecus_bieti
ENSTRUG00000013311	rbm28	99	48.995	ENSRROG00000040747	RBM28	77	65.000	Rhinopithecus_roxellana
ENSTRUG00000013311	rbm28	90	46.292	ENSSBOG00000012308	RBM28	77	56.277	Saimiri_boliviensis_boliviensis
ENSTRUG00000013311	rbm28	96	47.947	ENSSHAG00000017017	RBM28	60	55.204	Sarcophilus_harrisii
ENSTRUG00000013311	rbm28	57	58.837	ENSSFOG00015001231	rbm28	59	59.459	Scleropages_formosus
ENSTRUG00000013311	rbm28	58	66.228	ENSSMAG00000003885	rbm28	91	66.228	Scophthalmus_maximus
ENSTRUG00000013311	rbm28	58	69.348	ENSSDUG00000014270	rbm28	88	69.348	Seriola_dumerili
ENSTRUG00000013311	rbm28	99	63.868	ENSSLDG00000020099	rbm28	100	63.995	Seriola_lalandi_dorsalis
ENSTRUG00000013311	rbm28	72	56.836	ENSSARG00000008303	RBM28	79	55.867	Sorex_araneus
ENSTRUG00000013311	rbm28	66	58.824	ENSSPUG00000000838	RBM28	80	58.824	Sphenodon_punctatus
ENSTRUG00000013311	rbm28	57	68.514	ENSSPAG00000023305	rbm28	100	62.888	Stegastes_partitus
ENSTRUG00000013311	rbm28	99	48.645	ENSSSCG00000031847	RBM28	59	53.419	Sus_scrofa
ENSTRUG00000013311	rbm28	99	73.978	ENSTNIG00000017962	rbm28	99	73.854	Tetraodon_nigroviridis
ENSTRUG00000013311	rbm28	81	54.859	ENSTBEG00000012749	RBM28	81	53.824	Tupaia_belangeri
ENSTRUG00000013311	rbm28	99	48.306	ENSTTRG00000013647	RBM28	90	55.932	Tursiops_truncatus
ENSTRUG00000013311	rbm28	99	45.409	ENSUAMG00000006949	RBM28	93	51.538	Ursus_americanus
ENSTRUG00000013311	rbm28	99	48.875	ENSUMAG00000005997	RBM28	59	54.267	Ursus_maritimus
ENSTRUG00000013311	rbm28	85	45.388	ENSVPAG00000008304	RBM28	74	62.963	Vicugna_pacos
ENSTRUG00000013311	rbm28	99	48.990	ENSVVUG00000007270	RBM28	59	53.261	Vulpes_vulpes
ENSTRUG00000013311	rbm28	63	49.016	ENSXETG00000009271	rbm28	59	51.064	Xenopus_tropicalis
ENSTRUG00000013311	rbm28	58	61.572	ENSXCOG00000020357	rbm28	92	61.572	Xiphophorus_couchianus
ENSTRUG00000013311	rbm28	58	65.351	ENSXMAG00000004415	rbm28	59	65.495	Xiphophorus_maculatus