EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000013422 (Gene tree)
Gene ID: 105417876
Gene Symbol: mbd1b
Alias: mbd1|wu:fi45g12
Full Name: methyl-CpG binding domain protein 1
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 7400 bases
Position: chr19:12643790-12651189
Accession: 105417876
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000034221	MBD	PF01429.19	3.8e-12	1	1
ENSTRUP00000049262	MBD	PF01429.19	3.8e-12	1	1
ENSTRUP00000051458	MBD	PF01429.19	3.9e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000049096	-	4487	XM_011614333	ENSTRUP00000049262	803 (aa)	XP_011612635	UPI0005D1AAB3
ENSTRUT00000056921	-	4562	-	ENSTRUP00000051458	828 (aa)	-	-
ENSTRUT00000034347	-	3720	-	ENSTRUP00000034221	803 (aa)	-	H2UBA3

Gene Model

Click here to download ENSTRUG00000013422's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000013422's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000013422	mbd1b	50	31.026	ENSG00000141644	MBD1	75	54.545	Homo_sapiens
ENSTRUG00000013422	mbd1b	100	62.455	ENSAPOG00000012810	mbd1b	100	62.696	Acanthochromis_polyacanthus
ENSTRUG00000013422	mbd1b	90	56.836	ENSACIG00000010590	mbd1b	95	54.963	Amphilophus_citrinellus
ENSTRUG00000013422	mbd1b	100	65.259	ENSAOCG00000020272	mbd1b	100	65.380	Amphiprion_ocellaris
ENSTRUG00000013422	mbd1b	100	65.018	ENSAPEG00000023230	mbd1b	100	65.139	Amphiprion_percula
ENSTRUG00000013422	mbd1b	100	64.601	ENSATEG00000009608	mbd1b	100	64.601	Anabas_testudineus
ENSTRUG00000013422	mbd1b	50	30.597	ENSANAG00000036253	MBD1	51	51.724	Aotus_nancymaae
ENSTRUG00000013422	mbd1b	98	64.851	ENSACLG00000021383	mbd1b	96	64.851	Astatotilapia_calliptera
ENSTRUG00000013422	mbd1b	61	33.333	ENSBTAG00000003801	MBD1	70	33.613	Bos_taurus
ENSTRUG00000013422	mbd1b	50	30.288	ENSCJAG00000004959	MBD1	51	50.538	Callithrix_jacchus
ENSTRUG00000013422	mbd1b	50	30.830	ENSTSYG00000000509	MBD1	65	32.432	Carlito_syrichta
ENSTRUG00000013422	mbd1b	50	32.867	ENSCPOG00000001671	MBD1	63	32.134	Cavia_porcellus
ENSTRUG00000013422	mbd1b	54	30.464	ENSCATG00000029959	MBD1	51	50.538	Cercocebus_atys
ENSTRUG00000013422	mbd1b	50	31.026	ENSCANG00000033425	MBD1	51	50.538	Colobus_angolensis_palliatus
ENSTRUG00000013422	mbd1b	92	56.195	ENSCSEG00000009082	mbd1b	99	54.654	Cynoglossus_semilaevis
ENSTRUG00000013422	mbd1b	99	57.005	ENSCVAG00000001167	mbd1b	99	56.988	Cyprinodon_variegatus
ENSTRUG00000013422	mbd1b	93	36.165	ENSDARG00000025699	mbd1b	89	35.281	Danio_rerio
ENSTRUG00000013422	mbd1b	53	30.876	ENSEASG00005003857	MBD1	72	34.389	Equus_asinus_asinus
ENSTRUG00000013422	mbd1b	91	44.059	ENSELUG00000004375	mbd1b	89	45.116	Esox_lucius
ENSTRUG00000013422	mbd1b	52	32.857	ENSFCAG00000015730	MBD1	74	33.333	Felis_catus
ENSTRUG00000013422	mbd1b	99	56.159	ENSFHEG00000020120	mbd1b	98	56.280	Fundulus_heteroclitus
ENSTRUG00000013422	mbd1b	99	56.416	ENSGAFG00000008975	mbd1b	99	57.143	Gambusia_affinis
ENSTRUG00000013422	mbd1b	83	51.304	ENSGACG00000012106	-	99	53.985	Gasterosteus_aculeatus
ENSTRUG00000013422	mbd1b	50	31.026	ENSGGOG00000016966	MBD1	64	31.235	Gorilla_gorilla
ENSTRUG00000013422	mbd1b	98	64.975	ENSHBUG00000014270	mbd1b	96	64.975	Haplochromis_burtoni
ENSTRUG00000013422	mbd1b	52	34.685	ENSHGLG00000008740	MBD1	67	31.090	Heterocephalus_glaber_female
ENSTRUG00000013422	mbd1b	96	52.399	ENSHCOG00000009952	mbd1b	97	51.285	Hippocampus_comes
ENSTRUG00000013422	mbd1b	92	37.178	ENSIPUG00000015243	-	95	37.736	Ictalurus_punctatus
ENSTRUG00000013422	mbd1b	52	30.580	ENSSTOG00000007780	MBD1	66	31.395	Ictidomys_tridecemlineatus
ENSTRUG00000013422	mbd1b	99	59.732	ENSKMAG00000020760	mbd1b	98	59.976	Kryptolebias_marmoratus
ENSTRUG00000013422	mbd1b	68	36.095	ENSLACG00000002414	-	81	36.095	Latimeria_chalumnae
ENSTRUG00000013422	mbd1b	54	30.464	ENSMFAG00000026335	MBD1	73	31.163	Macaca_fascicularis
ENSTRUG00000013422	mbd1b	54	30.022	ENSMMUG00000009050	MBD1	51	50.538	Macaca_mulatta
ENSTRUG00000013422	mbd1b	54	30.464	ENSMNEG00000038822	MBD1	73	31.163	Macaca_nemestrina
ENSTRUG00000013422	mbd1b	54	30.464	ENSMLEG00000043121	MBD1	51	50.538	Mandrillus_leucophaeus
ENSTRUG00000013422	mbd1b	82	59.913	ENSMAMG00000023341	-	96	62.853	Mastacembelus_armatus
ENSTRUG00000013422	mbd1b	98	64.851	ENSMZEG00005010421	mbd1b	96	64.851	Maylandia_zebra
ENSTRUG00000013422	mbd1b	80	79.339	ENSMMOG00000011607	mbd1b	87	92.500	Mola_mola
ENSTRUG00000013422	mbd1b	70	33.148	ENSMODG00000001286	-	87	33.144	Monodelphis_domestica
ENSTRUG00000013422	mbd1b	99	64.226	ENSMALG00000007808	mbd1b	99	64.571	Monopterus_albus
ENSTRUG00000013422	mbd1b	52	30.947	ENSNLEG00000011661	-	51	50.538	Nomascus_leucogenys
ENSTRUG00000013422	mbd1b	99	64.192	ENSONIG00000020289	mbd1b	99	64.192	Oreochromis_niloticus
ENSTRUG00000013422	mbd1b	99	59.880	ENSORLG00000029390	mbd1b	99	59.495	Oryzias_latipes
ENSTRUG00000013422	mbd1b	99	60.457	ENSORLG00020000575	mbd1b	99	59.856	Oryzias_latipes_hni
ENSTRUG00000013422	mbd1b	99	60.384	ENSORLG00015014812	mbd1b	99	59.784	Oryzias_latipes_hsok
ENSTRUG00000013422	mbd1b	99	58.880	ENSOMEG00000023660	mbd1b	99	58.880	Oryzias_melastigma
ENSTRUG00000013422	mbd1b	50	31.026	ENSPPAG00000038886	MBD1	50	50.538	Pan_paniscus
ENSTRUG00000013422	mbd1b	52	32.857	ENSPPRG00000021387	MBD1	74	33.333	Panthera_pardus
ENSTRUG00000013422	mbd1b	52	32.787	ENSPTIG00000021231	MBD1	74	33.333	Panthera_tigris_altaica
ENSTRUG00000013422	mbd1b	50	31.026	ENSPTRG00000010021	MBD1	51	50.538	Pan_troglodytes
ENSTRUG00000013422	mbd1b	54	30.464	ENSPANG00000010867	MBD1	51	50.538	Papio_anubis
ENSTRUG00000013422	mbd1b	77	35.393	ENSPCIG00000027937	-	80	32.234	Phascolarctos_cinereus
ENSTRUG00000013422	mbd1b	91	59.786	ENSPFOG00000007511	mbd1b	97	57.337	Poecilia_formosa
ENSTRUG00000013422	mbd1b	91	59.651	ENSPLAG00000021258	mbd1b	97	57.337	Poecilia_latipinna
ENSTRUG00000013422	mbd1b	91	59.651	ENSPMEG00000024145	mbd1b	97	60.227	Poecilia_mexicana
ENSTRUG00000013422	mbd1b	99	56.448	ENSPREG00000021805	mbd1b	98	56.899	Poecilia_reticulata
ENSTRUG00000013422	mbd1b	99	36.444	ENSPNAG00000018075	mbd1b	99	35.433	Pygocentrus_nattereri
ENSTRUG00000013422	mbd1b	50	31.026	ENSRBIG00000041294	MBD1	50	50.538	Rhinopithecus_bieti
ENSTRUG00000013422	mbd1b	50	30.549	ENSRROG00000032517	MBD1	52	50.538	Rhinopithecus_roxellana
ENSTRUG00000013422	mbd1b	50	31.358	ENSSBOG00000027169	MBD1	76	30.805	Saimiri_boliviensis_boliviensis
ENSTRUG00000013422	mbd1b	63	58.261	ENSSFOG00015008591	-	64	58.261	Scleropages_formosus
ENSTRUG00000013422	mbd1b	95	65.044	ENSSMAG00000014640	mbd1b	85	65.087	Scophthalmus_maximus
ENSTRUG00000013422	mbd1b	91	68.463	ENSSDUG00000012996	mbd1b	96	64.554	Seriola_dumerili
ENSTRUG00000013422	mbd1b	77	83.673	ENSSLDG00000012422	mbd1b	95	83.673	Seriola_lalandi_dorsalis
ENSTRUG00000013422	mbd1b	100	64.862	ENSSPAG00000021447	mbd1b	99	65.459	Stegastes_partitus
ENSTRUG00000013422	mbd1b	50	31.175	ENSSSCG00000004516	MBD1	70	30.508	Sus_scrofa
ENSTRUG00000013422	mbd1b	68	87.970	ENSTNIG00000007326	-	80	87.970	Tetraodon_nigroviridis
ENSTRUG00000013422	mbd1b	52	31.121	ENSUAMG00000004752	MBD1	66	30.353	Ursus_americanus
ENSTRUG00000013422	mbd1b	52	30.217	ENSUMAG00000002947	MBD1	66	30.549	Ursus_maritimus
ENSTRUG00000013422	mbd1b	99	56.318	ENSXMAG00000005628	mbd1b	99	56.679	Xiphophorus_maculatus