EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSTRUG00000013471 (Gene tree)
Gene ID: 101070459
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Takifugu_rubripes
Status: putative
Strand: Plus strand
Length: 3836 bases
Position: chr17:6063074-6066909
Accession: 101070459
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSTRUP00000034359	PPR	PF01535.20	1.4e-14	1	2
ENSTRUP00000034359	PPR	PF01535.20	1.4e-14	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSTRUT00000034485	-	2601	XM_011612811	ENSTRUP00000034359	718 (aa)	XP_011611113	H2UBP1

Gene Model

Click here to download ENSTRUG00000013471's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSTRUG00000013471's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSTRUG00000013471	ptcd1	79	48.562	ENSG00000106246	PTCD1	87	47.742	Homo_sapiens
ENSTRUG00000013471	ptcd1	79	48.562	ENSG00000248919	ATP5MF-PTCD1	81	47.742	Homo_sapiens
ENSTRUG00000013471	ptcd1	88	62.323	ENSAPOG00000010679	ptcd1	96	62.323	Acanthochromis_polyacanthus
ENSTRUG00000013471	ptcd1	84	47.327	ENSAMEG00000006224	-	84	47.327	Ailuropoda_melanoleuca
ENSTRUG00000013471	ptcd1	93	65.430	ENSACIG00000017861	ptcd1	98	65.430	Amphilophus_citrinellus
ENSTRUG00000013471	ptcd1	99	62.709	ENSAOCG00000020741	-	96	64.069	Amphiprion_ocellaris
ENSTRUG00000013471	ptcd1	88	64.263	ENSAOCG00000022617	ptcd1	94	64.263	Amphiprion_ocellaris
ENSTRUG00000013471	ptcd1	99	62.989	ENSAPEG00000022632	ptcd1	96	64.358	Amphiprion_percula
ENSTRUG00000013471	ptcd1	99	65.369	ENSATEG00000007016	ptcd1	96	66.236	Anabas_testudineus
ENSTRUG00000013471	ptcd1	84	47.665	ENSAPLG00000006862	-	90	49.313	Anas_platyrhynchos
ENSTRUG00000013471	ptcd1	82	46.353	ENSACAG00000012871	-	79	46.353	Anolis_carolinensis
ENSTRUG00000013471	ptcd1	79	48.294	ENSANAG00000035790	-	89	47.222	Aotus_nancymaae
ENSTRUG00000013471	ptcd1	99	65.187	ENSACLG00000002824	ptcd1	96	65.951	Astatotilapia_calliptera
ENSTRUG00000013471	ptcd1	81	50.484	ENSAMXG00000037292	ptcd1	87	50.484	Astyanax_mexicanus
ENSTRUG00000013471	ptcd1	81	48.259	ENSBTAG00000020440	-	74	48.756	Bos_taurus
ENSTRUG00000013471	ptcd1	79	48.889	ENSCJAG00000015815	-	87	47.876	Callithrix_jacchus
ENSTRUG00000013471	ptcd1	82	46.711	ENSCAFG00000015055	-	80	46.711	Canis_familiaris
ENSTRUG00000013471	ptcd1	82	46.711	ENSCAFG00020014480	-	80	46.711	Canis_lupus_dingo
ENSTRUG00000013471	ptcd1	81	48.581	ENSCHIG00000027000	-	88	47.687	Capra_hircus
ENSTRUG00000013471	ptcd1	79	48.382	ENSTSYG00000029495	-	85	48.333	Carlito_syrichta
ENSTRUG00000013471	ptcd1	82	46.318	ENSCAPG00000014660	-	92	46.318	Cavia_aperea
ENSTRUG00000013471	ptcd1	82	46.972	ENSCPOG00000001780	-	86	46.972	Cavia_porcellus
ENSTRUG00000013471	ptcd1	82	47.720	ENSCCAG00000034025	-	89	47.377	Cebus_capucinus
ENSTRUG00000013471	ptcd1	79	48.722	ENSCATG00000040859	-	86	48.052	Cercocebus_atys
ENSTRUG00000013471	ptcd1	81	47.571	ENSCLAG00000006354	-	89	46.400	Chinchilla_lanigera
ENSTRUG00000013471	ptcd1	75	48.214	ENSCSAG00000017794	-	82	48.135	Chlorocebus_sabaeus
ENSTRUG00000013471	ptcd1	83	46.000	ENSCPBG00000020866	-	85	46.334	Chrysemys_picta_bellii
ENSTRUG00000013471	ptcd1	72	30.309	ENSCING00000007717	-	91	30.826	Ciona_intestinalis
ENSTRUG00000013471	ptcd1	81	48.013	ENSCANG00000023441	-	85	48.013	Colobus_angolensis_palliatus
ENSTRUG00000013471	ptcd1	86	46.625	ENSCGRG00001023686	Ptcd1	90	46.782	Cricetulus_griseus_chok1gshd
ENSTRUG00000013471	ptcd1	79	48.469	ENSCGRG00000015031	Ptcd1	83	48.639	Cricetulus_griseus_crigri
ENSTRUG00000013471	ptcd1	99	56.000	ENSCSEG00000002378	ptcd1	94	58.737	Cynoglossus_semilaevis
ENSTRUG00000013471	ptcd1	92	61.955	ENSCVAG00000003621	ptcd1	98	61.955	Cyprinodon_variegatus
ENSTRUG00000013471	ptcd1	98	61.777	ENSCVAG00000015826	ptcd1	98	61.952	Cyprinodon_variegatus
ENSTRUG00000013471	ptcd1	88	50.379	ENSDARG00000076176	ptcd1	93	50.379	Danio_rerio
ENSTRUG00000013471	ptcd1	79	48.469	ENSDNOG00000009957	-	85	48.112	Dasypus_novemcinctus
ENSTRUG00000013471	ptcd1	79	46.859	ENSDORG00000000740	Ptcd1	85	46.622	Dipodomys_ordii
ENSTRUG00000013471	ptcd1	81	38.760	ENSEBUG00000014515	ptcd1	96	37.258	Eptatretus_burgeri
ENSTRUG00000013471	ptcd1	81	47.659	ENSEASG00005002480	-	84	48.833	Equus_asinus_asinus
ENSTRUG00000013471	ptcd1	81	47.508	ENSECAG00000016617	-	84	48.833	Equus_caballus
ENSTRUG00000013471	ptcd1	85	57.430	ENSELUG00000016517	ptcd1	85	58.254	Esox_lucius
ENSTRUG00000013471	ptcd1	79	48.142	ENSFCAG00000015069	-	83	48.480	Felis_catus
ENSTRUG00000013471	ptcd1	78	47.059	ENSFALG00000013803	-	86	45.981	Ficedula_albicollis
ENSTRUG00000013471	ptcd1	79	48.299	ENSFDAG00000006393	-	84	47.913	Fukomys_damarensis
ENSTRUG00000013471	ptcd1	76	67.877	ENSFHEG00000012491	ptcd1	93	68.156	Fundulus_heteroclitus
ENSTRUG00000013471	ptcd1	86	59.649	ENSGMOG00000007639	ptcd1	95	61.074	Gadus_morhua
ENSTRUG00000013471	ptcd1	78	46.256	ENSGALG00000004711	-	85	46.228	Gallus_gallus
ENSTRUG00000013471	ptcd1	86	67.834	ENSGAFG00000013175	ptcd1	87	68.473	Gambusia_affinis
ENSTRUG00000013471	ptcd1	88	68.396	ENSGACG00000016607	ptcd1	99	68.868	Gasterosteus_aculeatus
ENSTRUG00000013471	ptcd1	76	46.690	ENSGAGG00000021832	-	85	46.404	Gopherus_agassizii
ENSTRUG00000013471	ptcd1	79	48.382	ENSGGOG00000015123	-	87	47.565	Gorilla_gorilla
ENSTRUG00000013471	ptcd1	99	64.779	ENSHBUG00000018275	ptcd1	99	64.641	Haplochromis_burtoni
ENSTRUG00000013471	ptcd1	81	48.997	ENSHGLG00000017621	-	85	48.997	Heterocephalus_glaber_female
ENSTRUG00000013471	ptcd1	81	48.997	ENSHGLG00100007218	-	85	48.997	Heterocephalus_glaber_male
ENSTRUG00000013471	ptcd1	99	54.006	ENSHCOG00000010784	ptcd1	96	55.971	Hippocampus_comes
ENSTRUG00000013471	ptcd1	82	47.533	ENSSTOG00000001682	-	86	47.533	Ictidomys_tridecemlineatus
ENSTRUG00000013471	ptcd1	81	46.962	ENSJJAG00000000319	Ptcd1	86	47.920	Jaculus_jaculus
ENSTRUG00000013471	ptcd1	90	65.850	ENSKMAG00000008708	ptcd1	91	66.003	Kryptolebias_marmoratus
ENSTRUG00000013471	ptcd1	99	63.260	ENSLBEG00000008061	ptcd1	97	64.092	Labrus_bergylta
ENSTRUG00000013471	ptcd1	79	50.845	ENSLACG00000011172	ptcd1	82	50.845	Latimeria_chalumnae
ENSTRUG00000013471	ptcd1	82	52.139	ENSLOCG00000004833	ptcd1	95	50.984	Lepisosteus_oculatus
ENSTRUG00000013471	ptcd1	86	47.833	ENSLAFG00000002588	-	90	47.833	Loxodonta_africana
ENSTRUG00000013471	ptcd1	79	48.893	ENSMFAG00000041324	-	86	48.214	Macaca_fascicularis
ENSTRUG00000013471	ptcd1	79	48.722	ENSMMUG00000030408	-	86	48.052	Macaca_mulatta
ENSTRUG00000013471	ptcd1	79	48.893	ENSMNEG00000043786	-	86	48.214	Macaca_nemestrina
ENSTRUG00000013471	ptcd1	79	36.915	ENSMLEG00000031179	-	85	42.857	Mandrillus_leucophaeus
ENSTRUG00000013471	ptcd1	99	63.850	ENSMAMG00000007623	ptcd1	95	65.029	Mastacembelus_armatus
ENSTRUG00000013471	ptcd1	99	65.187	ENSMZEG00005012722	ptcd1	99	65.187	Maylandia_zebra
ENSTRUG00000013471	ptcd1	80	46.885	ENSMGAG00000004211	-	80	46.885	Meleagris_gallopavo
ENSTRUG00000013471	ptcd1	81	46.980	ENSMICG00000017428	-	85	46.980	Microcebus_murinus
ENSTRUG00000013471	ptcd1	97	69.405	ENSMMOG00000020243	ptcd1	95	72.831	Mola_mola
ENSTRUG00000013471	ptcd1	87	46.061	ENSMODG00000001350	-	88	46.061	Monodelphis_domestica
ENSTRUG00000013471	ptcd1	99	63.712	ENSMALG00000018442	ptcd1	96	64.521	Monopterus_albus
ENSTRUG00000013471	ptcd1	83	46.191	MGP_CAROLIEiJ_G0028011	Ptcd1	88	46.191	Mus_caroli
ENSTRUG00000013471	ptcd1	83	45.588	ENSMUSG00000029624	Ptcd1	88	45.617	Mus_musculus
ENSTRUG00000013471	ptcd1	79	47.530	MGP_PahariEiJ_G0024580	Ptcd1	84	47.359	Mus_pahari
ENSTRUG00000013471	ptcd1	83	45.617	MGP_SPRETEiJ_G0029012	Ptcd1	88	45.617	Mus_spretus
ENSTRUG00000013471	ptcd1	81	48.074	ENSMPUG00000016518	-	86	48.026	Mustela_putorius_furo
ENSTRUG00000013471	ptcd1	81	48.409	ENSMLUG00000010994	-	79	48.409	Myotis_lucifugus
ENSTRUG00000013471	ptcd1	98	62.570	ENSNBRG00000010079	ptcd1	97	64.845	Neolamprologus_brichardi
ENSTRUG00000013471	ptcd1	70	48.099	ENSNLEG00000011060	-	87	48.099	Nomascus_leucogenys
ENSTRUG00000013471	ptcd1	85	46.677	ENSMEUG00000006930	-	85	48.007	Notamacropus_eugenii
ENSTRUG00000013471	ptcd1	70	53.968	ENSOPRG00000013647	-	75	53.968	Ochotona_princeps
ENSTRUG00000013471	ptcd1	83	67.320	ENSONIG00000003168	ptcd1	99	67.213	Oreochromis_niloticus
ENSTRUG00000013471	ptcd1	77	47.895	ENSOANG00000007728	-	75	47.895	Ornithorhynchus_anatinus
ENSTRUG00000013471	ptcd1	82	47.941	ENSOCUG00000010584	-	84	47.941	Oryctolagus_cuniculus
ENSTRUG00000013471	ptcd1	88	65.835	ENSORLG00000009275	ptcd1	91	66.041	Oryzias_latipes
ENSTRUG00000013471	ptcd1	88	66.147	ENSORLG00020000988	ptcd1	92	66.354	Oryzias_latipes_hni
ENSTRUG00000013471	ptcd1	88	65.630	ENSORLG00015010557	ptcd1	92	65.835	Oryzias_latipes_hsok
ENSTRUG00000013471	ptcd1	96	62.428	ENSOMEG00000020627	ptcd1	99	62.428	Oryzias_melastigma
ENSTRUG00000013471	ptcd1	79	46.949	ENSOGAG00000010877	-	84	47.395	Otolemur_garnettii
ENSTRUG00000013471	ptcd1	81	45.470	ENSOARG00000018676	-	85	45.964	Ovis_aries
ENSTRUG00000013471	ptcd1	79	48.552	ENSPPAG00000036024	-	87	47.727	Pan_paniscus
ENSTRUG00000013471	ptcd1	79	48.649	ENSPPRG00000003478	-	84	48.649	Panthera_pardus
ENSTRUG00000013471	ptcd1	79	48.722	ENSPTRG00000019452	-	87	47.890	Pan_troglodytes
ENSTRUG00000013471	ptcd1	79	49.228	ENSPANG00000016730	-	86	48.529	Papio_anubis
ENSTRUG00000013471	ptcd1	88	48.817	ENSPKIG00000014215	ptcd1	94	49.112	Paramormyrops_kingsleyae
ENSTRUG00000013471	ptcd1	79	47.039	ENSPSIG00000011184	-	98	47.039	Pelodiscus_sinensis
ENSTRUG00000013471	ptcd1	69	40.116	ENSPMAG00000009667	ptcd1	100	40.116	Petromyzon_marinus
ENSTRUG00000013471	ptcd1	83	45.984	ENSPCIG00000024778	-	91	44.725	Phascolarctos_cinereus
ENSTRUG00000013471	ptcd1	90	66.717	ENSPFOG00000004458	ptcd1	90	67.130	Poecilia_formosa
ENSTRUG00000013471	ptcd1	90	66.009	ENSPLAG00000011051	ptcd1	90	66.410	Poecilia_latipinna
ENSTRUG00000013471	ptcd1	92	66.417	ENSPMEG00000020547	ptcd1	90	66.821	Poecilia_mexicana
ENSTRUG00000013471	ptcd1	92	64.468	ENSPREG00000000059	ptcd1	90	65.170	Poecilia_reticulata
ENSTRUG00000013471	ptcd1	82	47.394	ENSPPYG00000017377	-	92	47.394	Pongo_abelii
ENSTRUG00000013471	ptcd1	72	54.676	ENSPCAG00000001852	-	83	54.676	Procavia_capensis
ENSTRUG00000013471	ptcd1	89	45.137	ENSPCOG00000018596	-	93	45.745	Propithecus_coquereli
ENSTRUG00000013471	ptcd1	52	55.435	ENSPVAG00000007529	-	58	55.435	Pteropus_vampyrus
ENSTRUG00000013471	ptcd1	99	64.910	ENSPNYG00000019993	ptcd1	96	65.665	Pundamilia_nyererei
ENSTRUG00000013471	ptcd1	80	53.465	ENSPNAG00000014931	ptcd1	89	52.404	Pygocentrus_nattereri
ENSTRUG00000013471	ptcd1	83	47.049	ENSRNOG00000000987	Ptcd1	94	45.525	Rattus_norvegicus
ENSTRUG00000013471	ptcd1	86	46.429	ENSRBIG00000043393	-	91	46.562	Rhinopithecus_bieti
ENSTRUG00000013471	ptcd1	86	46.533	ENSRROG00000036420	-	91	46.667	Rhinopithecus_roxellana
ENSTRUG00000013471	ptcd1	79	48.054	ENSSBOG00000024114	-	87	47.002	Saimiri_boliviensis_boliviensis
ENSTRUG00000013471	ptcd1	80	47.446	ENSSHAG00000011376	-	91	47.446	Sarcophilus_harrisii
ENSTRUG00000013471	ptcd1	81	53.934	ENSSFOG00015007909	ptcd1	82	54.098	Scleropages_formosus
ENSTRUG00000013471	ptcd1	86	64.094	ENSSMAG00000000218	ptcd1	99	64.094	Scophthalmus_maximus
ENSTRUG00000013471	ptcd1	96	64.723	ENSSDUG00000015671	ptcd1	98	66.176	Seriola_dumerili
ENSTRUG00000013471	ptcd1	92	65.929	ENSSLDG00000014261	ptcd1	99	63.821	Seriola_lalandi_dorsalis
ENSTRUG00000013471	ptcd1	83	45.840	ENSSPUG00000003540	-	81	46.777	Sphenodon_punctatus
ENSTRUG00000013471	ptcd1	99	64.286	ENSSPAG00000011049	ptcd1	97	65.581	Stegastes_partitus
ENSTRUG00000013471	ptcd1	81	48.000	ENSSSCG00000007622	-	90	48.000	Sus_scrofa
ENSTRUG00000013471	ptcd1	78	47.179	ENSTGUG00000007563	-	94	47.521	Taeniopygia_guttata
ENSTRUG00000013471	ptcd1	95	78.509	ENSTNIG00000008271	ptcd1	99	78.509	Tetraodon_nigroviridis
ENSTRUG00000013471	ptcd1	84	46.845	ENSTBEG00000011021	-	90	46.845	Tupaia_belangeri
ENSTRUG00000013471	ptcd1	81	47.306	ENSTTRG00000003006	-	85	47.306	Tursiops_truncatus
ENSTRUG00000013471	ptcd1	81	47.078	ENSUAMG00000008049	-	85	47.412	Ursus_americanus
ENSTRUG00000013471	ptcd1	81	47.324	ENSVVUG00000008836	-	85	47.324	Vulpes_vulpes
ENSTRUG00000013471	ptcd1	79	46.988	ENSXETG00000009891	ptcd1	84	46.988	Xenopus_tropicalis
ENSTRUG00000013471	ptcd1	90	66.260	ENSXMAG00000015540	ptcd1	90	66.202	Xiphophorus_maculatus